Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09030

Experiment: McCas_formate_complete sodium nitrite 0.125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sodium nitrite 0.125 mM
1,664,334	-		MMJJ_RS09020	0.27	+0.4
1,664,338	+		MMJJ_RS09020	0.28	+0.3
1,664,458	-		MMJJ_RS09020	0.57	+2.2
1,664,459	+		MMJJ_RS09020	0.57	+3.2
1,664,459	+		MMJJ_RS09020	0.57	+2.5
1,664,459	+		MMJJ_RS09020	0.57	-0.6
1,664,470	+		MMJJ_RS09020	0.60	+0.5
1,664,482	+		MMJJ_RS09020	0.63	-0.2
1,664,530	-		MMJJ_RS09020	0.74	-0.1
1,664,564	-		MMJJ_RS09020	0.82	-1.0
1,664,610	-				+0.7
1,664,612	-				+0.6
1,664,613	+				-0.4
1,664,619	-				-1.1
1,664,620	+				+0.7
1,664,621	-				-1.5
1,664,622	+				-0.9
1,664,622	+				-1.3
1,664,623	-				+0.1
1,664,623	-				-0.8
1,664,628	-				-1.0
1,664,628	-				+0.7
1,664,628	-				-0.7
1,664,629	+				-1.5
1,664,629	+				+0.8
1,664,629	+				+0.3
1,664,664	+				+0.4
1,664,664	+				-2.9
1,664,664	+				-0.4
1,664,664	+				-0.4
1,664,665	-				+0.8
1,664,665	-				-0.4
1,664,666	+				-2.8
1,664,667	-				-0.9
1,664,667	-				-0.4
1,664,668	+				-1.1
1,664,668	+				+2.1
1,664,668	+				+1.9
1,664,668	+				-0.1
1,664,675	-				+1.7
1,664,675	-				-0.6
1,664,675	-				-0.5
1,664,676	+				-1.5
1,664,679	-				-0.7
1,664,680	+				-1.1
1,664,691	-				-0.4
1,664,700	-				-2.1
1,664,701	+				-1.3
1,664,702	-				-0.2
1,664,703	+				+1.6
1,664,703	+				+0.7
1,664,704	-				+1.1
1,664,704	-				-1.5
1,664,705	+				-1.3
1,664,709	-				-0.1
1,664,714	-				-1.2
1,664,717	+				-0.8
1,664,719	-				-0.6
1,665,157	-				+0.4
1,665,327	+				-0.6
1,665,355	+				-1.2
1,665,389	-				-3.5
1,665,390	+				-0.6
1,665,433	-				+1.7
1,665,481	-				-1.2
1,665,481	-				-0.9
1,665,481	-				-3.1
1,665,481	-				-0.0
1,665,481	-				-2.0
1,665,481	-				-1.1
1,665,481	-				-1.6
1,665,481	-				-0.8
1,665,482	+				+0.4
1,665,494	-				-1.0
1,665,497	-				-1.6
1,665,501	+				+1.8
1,665,521	-				+1.4
1,665,587	-				+0.4
1,665,623	-		MMJJ_RS09030	0.10	-1.2
1,665,644	-		MMJJ_RS09030	0.11	-3.2
1,665,644	-		MMJJ_RS09030	0.11	-1.2
1,665,698	-		MMJJ_RS09030	0.13	-2.6
1,665,929	+		MMJJ_RS09030	0.20	-2.6
1,665,989	-		MMJJ_RS09030	0.23	-0.2
1,666,003	-				+0.4
1,666,027	-		MMJJ_RS09030	0.24	-1.3
1,666,107	-		MMJJ_RS09030	0.27	-2.2
1,666,112	-		MMJJ_RS09030	0.27	-1.2
1,666,227	+		MMJJ_RS09030	0.31	-0.6
1,666,229	-		MMJJ_RS09030	0.31	-0.4
1,666,298	-		MMJJ_RS09030	0.33	-2.7
1,666,309	-		MMJJ_RS09030	0.33	-2.6
1,666,309	-		MMJJ_RS09030	0.33	-1.6
1,666,380	-		MMJJ_RS09030	0.36	-1.2
1,666,434	-		MMJJ_RS09030	0.38	-0.6
1,666,435	+		MMJJ_RS09030	0.38	-2.9
1,666,461	-		MMJJ_RS09030	0.39	-1.6
1,666,527	+		MMJJ_RS09030	0.41	-1.6
1,666,536	-		MMJJ_RS09030	0.41	+0.4
1,666,536	-		MMJJ_RS09030	0.41	+1.0
1,666,536	-		MMJJ_RS09030	0.41	-1.6
1,666,541	-		MMJJ_RS09030	0.41	-1.2
1,666,541	-		MMJJ_RS09030	0.41	-0.0
1,666,542	+		MMJJ_RS09030	0.41	+0.4
1,666,542	+		MMJJ_RS09030	0.41	-1.9
1,666,543	-		MMJJ_RS09030	0.41	-2.2
1,666,561	+		MMJJ_RS09030	0.42	-2.2
1,666,574	-		MMJJ_RS09030	0.42	-0.2
1,666,578	-		MMJJ_RS09030	0.43	-2.1
1,666,616	-		MMJJ_RS09030	0.44	+0.4
1,666,617	+		MMJJ_RS09030	0.44	-2.9
1,666,694	+		MMJJ_RS09030	0.47	-1.2
1,666,695	-		MMJJ_RS09030	0.47	-1.2
1,666,695	-		MMJJ_RS09030	0.47	-2.2
1,666,781	-		MMJJ_RS09030	0.50	-1.8
1,666,980	-		MMJJ_RS09030	0.56	-1.3
1,666,981	+		MMJJ_RS09030	0.56	-0.6
1,666,981	+		MMJJ_RS09030	0.56	-1.6
1,667,125	-		MMJJ_RS09030	0.61	-1.8
1,667,127	-		MMJJ_RS09030	0.61	-2.2
1,667,127	-		MMJJ_RS09030	0.61	-2.6
1,667,128	+		MMJJ_RS09030	0.61	-1.6
1,667,128	+		MMJJ_RS09030	0.61	-0.6
1,667,133	-		MMJJ_RS09030	0.62	-0.6
1,667,151	+		MMJJ_RS09030	0.62	-1.2
1,667,231	-		MMJJ_RS09030	0.65	-0.6
1,667,232	+		MMJJ_RS09030	0.65	-1.6
1,667,275	-		MMJJ_RS09030	0.66	-1.2
1,667,309	-		MMJJ_RS09030	0.68	-1.9
1,667,330	-		MMJJ_RS09030	0.68	-2.7
1,667,330	-		MMJJ_RS09030	0.68	-1.9
1,667,331	+		MMJJ_RS09030	0.68	-2.2
1,667,357	-		MMJJ_RS09030	0.69	-1.9
1,667,360	-		MMJJ_RS09030	0.69	-1.9
1,667,360	-		MMJJ_RS09030	0.69	-1.2
1,667,441	-		MMJJ_RS09030	0.72	-0.8
1,667,474	-		MMJJ_RS09030	0.73	-0.6
1,667,555	+		MMJJ_RS09030	0.76	-0.8
1,667,649	-		MMJJ_RS09030	0.79	+1.4
1,667,649	-		MMJJ_RS09030	0.79	-0.6
1,667,684	-		MMJJ_RS09030	0.80	-0.6
1,667,684	-		MMJJ_RS09030	0.80	-1.6
1,667,684	-		MMJJ_RS09030	0.80	-1.6
1,667,685	+		MMJJ_RS09030	0.80	+1.4
1,667,685	+		MMJJ_RS09030	0.80	-2.4
1,667,685	+		MMJJ_RS09030	0.80	-1.4
1,667,685	+		MMJJ_RS09030	0.80	-1.2
1,667,688	-		MMJJ_RS09030	0.80	-2.6
1,667,691	+		MMJJ_RS09030	0.81	-1.2
1,667,691	+		MMJJ_RS09030	0.81	-0.6
1,667,702	-		MMJJ_RS09030	0.81	-0.6
1,667,702	-		MMJJ_RS09030	0.81	-1.6
1,667,709	+		MMJJ_RS09030	0.81	-1.9
1,667,789	+		MMJJ_RS09030	0.84	-2.8
1,667,818	-		MMJJ_RS09030	0.85	-1.6
1,667,819	+		MMJJ_RS09030	0.85	-2.4
1,667,864	-		MMJJ_RS09030	0.86	-1.9
1,667,865	+		MMJJ_RS09030	0.87	-1.9
1,667,886	-		MMJJ_RS09030	0.87	-2.6
1,667,905	-		MMJJ_RS09030	0.88	-1.9
1,667,924	+		MMJJ_RS09030	0.89	-1.9
1,667,926	-		MMJJ_RS09030	0.89	+0.4
1,667,928	-		MMJJ_RS09030	0.89	-0.6
1,667,929	+		MMJJ_RS09030	0.89	-2.2
1,667,929	+		MMJJ_RS09030	0.89	-0.9
1,667,948	-		MMJJ_RS09030	0.89	+0.4
1,667,960	+		MMJJ_RS09030	0.90	-0.6
1,667,964	+		MMJJ_RS09030	0.90	-1.2
1,667,987	-				+0.4
1,668,004	+				+0.4
1,668,045	+				-1.9
1,668,068	+				-0.6
1,668,127	-				-2.4
1,668,131	-				-1.9
1,668,137	+				-1.2
1,668,140	+				-1.6
1,668,140	+				-1.6
1,668,144	+				-1.6
1,668,171	-				-0.6
1,668,195	+				-1.2
1,668,251	+				-1.2
1,668,251	+				-1.6
1,668,271	-				-1.9
1,668,272	+				+2.7
1,668,272	+				-3.6
1,668,285	+				-2.3
1,668,288	-				-0.0
1,668,288	-				-1.2
1,668,288	-				-1.2
1,668,288	-				-1.5
1,668,289	+				-1.8
1,668,289	+				-0.6
1,668,290	-				-2.4
1,668,290	-				-2.4
1,668,290	-				-4.3
1,668,290	-				-0.9
1,668,290	-				-1.0
1,668,291	+				+0.1
1,668,292	-				+0.4
1,668,292	-				-0.2
1,668,292	-				+0.6
1,668,293	+				+0.4
1,668,293	+				-2.8
1,668,293	+				-1.9
1,668,301	-				-2.8
1,668,302	+				+0.0
1,668,313	+				-0.9
1,668,313	+				-2.5
1,668,314	-				+1.2
1,668,314	-				+0.7
1,668,314	-				-1.2
1,668,314	-				-0.1
1,668,314	-				-2.6
1,668,315	+				-0.6
1,668,315	+				+0.0
1,668,315	+				-1.3
1,668,315	+				-1.5
1,668,315	+				+1.2
1,668,317	-				+0.5
1,668,317	-				-0.1
1,668,317	-				-1.9
1,668,317	-				+2.3
1,668,317	-				+2.6
1,668,317	-				-0.7
1,668,317	-				-2.1
1,668,317	-				-2.1
1,668,318	+				+3.0
1,668,318	+				+1.7
1,668,318	+				+0.1
1,668,318	+				+0.8
1,668,318	+				+0.2
1,668,318	+				+3.1
1,668,318	+				-2.4
1,668,318	+				-0.1
1,668,318	+				-0.4
1,668,318	+				+2.0
1,668,318	+				-0.8
1,668,318	+				+0.6
1,668,318	+				+1.1
1,668,319	-				+0.1
1,668,319	-				-0.2
1,668,319	-				+0.2
1,668,319	-				+0.6
1,668,320	+				+0.5
1,668,321	-				+1.5
1,668,321	-				+0.6
1,668,321	-				+2.5
1,668,322	+				+1.6
1,668,353	-				-0.2
1,668,357	+				-1.9
1,668,358	-				-0.9
1,668,369	-				-0.6
1,668,370	+				+7.0
1,668,382	-				+0.4
1,669,084	-				-0.2
1,669,210	+		MMJJ_RS09035	0.41	-2.2