Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03305 and MMJJ_RS03310 are separated by 14 nucleotides MMJJ_RS03310 and MMJJ_RS03315 are separated by 211 nucleotides
MMJJ_RS03305: MMJJ_RS03305 - zincin-like metallopeptidase domain-containing protein, at 627,263 to 629,320
_RS03305
MMJJ_RS03310: MMJJ_RS03310 - hypothetical protein, at 629,335 to 629,553
_RS03310
MMJJ_RS03315: MMJJ_RS03315 - hypothetical protein, at 629,765 to 631,825
_RS03315
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 628.373 kb on + strand, within MMJJ_RS03305 at 628.426 kb on + strand, within MMJJ_RS03305 at 628.430 kb on + strand, within MMJJ_RS03305 at 628.482 kb on - strand, within MMJJ_RS03305 at 628.483 kb on + strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.507 kb on + strand, within MMJJ_RS03305 at 628.509 kb on - strand, within MMJJ_RS03305 at 628.607 kb on + strand, within MMJJ_RS03305 at 628.614 kb on - strand, within MMJJ_RS03305 at 628.929 kb on - strand, within MMJJ_RS03305 at 628.985 kb on - strand, within MMJJ_RS03305 at 628.986 kb on + strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.032 kb on + strand, within MMJJ_RS03305 at 629.041 kb on + strand, within MMJJ_RS03305 at 629.051 kb on - strand, within MMJJ_RS03305 at 629.052 kb on + strand, within MMJJ_RS03305 at 629.058 kb on - strand, within MMJJ_RS03305 at 629.058 kb on - strand, within MMJJ_RS03305 at 629.089 kb on - strand, within MMJJ_RS03305 at 629.111 kb on + strand, within MMJJ_RS03305 at 629.126 kb on - strand at 629.165 kb on - strand at 629.167 kb on - strand at 629.167 kb on - strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.222 kb on + strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.228 kb on + strand at 629.228 kb on + strand at 629.228 kb on + strand at 629.230 kb on + strand at 629.235 kb on - strand at 629.252 kb on - strand at 629.312 kb on - strand at 629.313 kb on + strand at 629.318 kb on - strand at 629.324 kb on + strand at 629.331 kb on - strand at 629.367 kb on + strand, within MMJJ_RS03310 at 629.384 kb on - strand, within MMJJ_RS03310 at 629.385 kb on + strand, within MMJJ_RS03310 at 629.427 kb on - strand, within MMJJ_RS03310 at 629.436 kb on - strand, within MMJJ_RS03310 at 629.436 kb on - strand, within MMJJ_RS03310 at 629.448 kb on + strand, within MMJJ_RS03310 at 629.503 kb on - strand, within MMJJ_RS03310 at 629.503 kb on - strand, within MMJJ_RS03310 at 629.504 kb on + strand, within MMJJ_RS03310 at 629.505 kb on - strand at 629.550 kb on + strand at 629.551 kb on - strand at 629.552 kb on + strand at 629.590 kb on + strand at 629.590 kb on + strand at 629.630 kb on - strand at 629.633 kb on + strand at 629.644 kb on + strand at 629.804 kb on - strand at 629.813 kb on + strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.862 kb on + strand at 629.862 kb on + strand at 629.864 kb on - strand at 629.864 kb on - strand at 629.873 kb on - strand at 629.873 kb on - strand at 629.899 kb on - strand at 629.907 kb on + strand at 629.910 kb on + strand at 629.968 kb on - strand at 629.997 kb on + strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.025 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.069 kb on - strand, within MMJJ_RS03315 at 630.070 kb on + strand, within MMJJ_RS03315 at 630.094 kb on - strand, within MMJJ_RS03315 at 630.095 kb on + strand, within MMJJ_RS03315 at 630.110 kb on + strand, within MMJJ_RS03315 at 630.319 kb on - strand, within MMJJ_RS03315 at 630.320 kb on + strand, within MMJJ_RS03315 at 630.320 kb on + strand at 630.324 kb on + strand, within MMJJ_RS03315 at 630.392 kb on + strand, within MMJJ_RS03315 at 630.412 kb on - strand, within MMJJ_RS03315 at 630.422 kb on + strand, within MMJJ_RS03315 at 630.437 kb on - strand, within MMJJ_RS03315 at 630.438 kb on + strand, within MMJJ_RS03315 at 630.438 kb on + strand, within MMJJ_RS03315 at 630.465 kb on - strand, within MMJJ_RS03315 at 630.466 kb on + strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.469 kb on - strand, within MMJJ_RS03315 at 630.470 kb on + strand, within MMJJ_RS03315 at 630.493 kb on - strand, within MMJJ_RS03315 at 630.494 kb on + strand, within MMJJ_RS03315 at 630.494 kb on + strand, within MMJJ_RS03315 at 630.496 kb on + strand, within MMJJ_RS03315 at 630.530 kb on + strand, within MMJJ_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 628,373 + MMJJ_RS03305 0.54 +0.8 628,426 + MMJJ_RS03305 0.57 +1.2 628,430 + MMJJ_RS03305 0.57 -1.3 628,482 - MMJJ_RS03305 0.59 +0.3 628,483 + MMJJ_RS03305 0.59 -1.2 628,506 - MMJJ_RS03305 0.60 -1.3 628,506 - MMJJ_RS03305 0.60 -0.1 628,506 - MMJJ_RS03305 0.60 +0.8 628,507 + MMJJ_RS03305 0.60 +0.3 628,509 - MMJJ_RS03305 0.61 +0.6 628,607 + MMJJ_RS03305 0.65 +0.0 628,614 - MMJJ_RS03305 0.66 -0.6 628,929 - MMJJ_RS03305 0.81 -3.3 628,985 - MMJJ_RS03305 0.84 -0.9 628,986 + MMJJ_RS03305 0.84 -0.3 629,031 - MMJJ_RS03305 0.86 +0.3 629,031 - MMJJ_RS03305 0.86 -1.1 629,031 - MMJJ_RS03305 0.86 -0.6 629,031 - MMJJ_RS03305 0.86 +0.4 629,032 + MMJJ_RS03305 0.86 -0.2 629,041 + MMJJ_RS03305 0.86 -0.4 629,051 - MMJJ_RS03305 0.87 -0.1 629,052 + MMJJ_RS03305 0.87 -0.0 629,058 - MMJJ_RS03305 0.87 -0.3 629,058 - MMJJ_RS03305 0.87 -0.4 629,089 - MMJJ_RS03305 0.89 +0.2 629,111 + MMJJ_RS03305 0.90 -0.7 629,126 - +0.2 629,165 - +0.9 629,167 - -0.7 629,167 - -0.2 629,168 + +1.2 629,168 + -0.1 629,168 + -0.2 629,168 + +0.5 629,222 + -0.8 629,227 - +0.6 629,227 - +1.1 629,227 - -0.7 629,227 - -1.6 629,227 - -1.0 629,227 - -0.0 629,228 + +1.9 629,228 + +0.4 629,228 + +0.0 629,230 + +0.0 629,235 - -2.3 629,252 - -0.2 629,312 - -1.1 629,313 + +0.9 629,318 - +0.2 629,324 + +1.1 629,331 - -2.9 629,367 + MMJJ_RS03310 0.15 +0.4 629,384 - MMJJ_RS03310 0.22 -1.8 629,385 + MMJJ_RS03310 0.23 +1.0 629,427 - MMJJ_RS03310 0.42 -2.1 629,436 - MMJJ_RS03310 0.46 -0.6 629,436 - MMJJ_RS03310 0.46 -1.6 629,448 + MMJJ_RS03310 0.52 +1.7 629,503 - MMJJ_RS03310 0.77 -1.2 629,503 - MMJJ_RS03310 0.77 -1.6 629,504 + MMJJ_RS03310 0.77 -1.9 629,505 - +1.0 629,550 + +0.6 629,551 - -1.0 629,552 + -0.5 629,590 + +1.4 629,590 + +0.4 629,630 - -2.4 629,633 + -1.0 629,644 + -0.5 629,804 - +0.3 629,813 + -0.1 629,861 - +0.5 629,861 - -2.5 629,861 - -0.1 629,861 - -1.1 629,862 + +0.9 629,862 + -1.2 629,864 - +1.3 629,864 - -0.0 629,873 - +0.9 629,873 - -2.2 629,899 - +1.9 629,907 + +0.9 629,910 + -1.9 629,968 - -1.4 629,997 + MMJJ_RS03315 0.11 -0.6 630,021 - MMJJ_RS03315 0.12 +0.7 630,021 - MMJJ_RS03315 0.12 -0.6 630,021 - MMJJ_RS03315 0.12 -0.8 630,025 + MMJJ_RS03315 0.13 -0.9 630,067 + MMJJ_RS03315 0.15 +0.7 630,067 + MMJJ_RS03315 0.15 -1.7 630,067 + MMJJ_RS03315 0.15 +1.2 630,069 - MMJJ_RS03315 0.15 +1.6 630,070 + MMJJ_RS03315 0.15 -0.4 630,094 - MMJJ_RS03315 0.16 -0.9 630,095 + MMJJ_RS03315 0.16 -0.6 630,110 + MMJJ_RS03315 0.17 +0.6 630,319 - MMJJ_RS03315 0.27 +0.1 630,320 + MMJJ_RS03315 0.27 -0.6 630,320 + +0.4 630,324 + MMJJ_RS03315 0.27 +2.1 630,392 + MMJJ_RS03315 0.30 +1.1 630,412 - MMJJ_RS03315 0.31 +0.2 630,422 + MMJJ_RS03315 0.32 -0.4 630,437 - MMJJ_RS03315 0.33 -0.3 630,438 + MMJJ_RS03315 0.33 -1.2 630,438 + MMJJ_RS03315 0.33 -0.5 630,465 - MMJJ_RS03315 0.34 +0.2 630,466 + MMJJ_RS03315 0.34 -0.3 630,467 - MMJJ_RS03315 0.34 -1.3 630,467 - MMJJ_RS03315 0.34 +0.4 630,467 - MMJJ_RS03315 0.34 +0.4 630,467 - MMJJ_RS03315 0.34 +0.5 630,467 - MMJJ_RS03315 0.34 -1.5 630,468 + MMJJ_RS03315 0.34 -1.3 630,468 + MMJJ_RS03315 0.34 +0.6 630,468 + MMJJ_RS03315 0.34 +1.2 630,468 + MMJJ_RS03315 0.34 +0.3 630,468 + MMJJ_RS03315 0.34 -0.5 630,468 + MMJJ_RS03315 0.34 -1.4 630,469 - MMJJ_RS03315 0.34 +0.1 630,470 + MMJJ_RS03315 0.34 +0.5 630,493 - MMJJ_RS03315 0.35 -0.0 630,494 + MMJJ_RS03315 0.35 +1.3 630,494 + MMJJ_RS03315 0.35 -0.3 630,496 + MMJJ_RS03315 0.35 -0.1 630,530 + MMJJ_RS03315 0.37 +1.4
Or see this region's nucleotide sequence