Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01045 and MMJJ_RS01050 are separated by 12 nucleotides MMJJ_RS01050 and MMJJ_RS01055 are separated by 10 nucleotides MMJJ_RS01055 and MMJJ_RS01060 are separated by 7 nucleotides
MMJJ_RS01045: MMJJ_RS01045 - ABC transporter permease, at 203,792 to 205,015
_RS01045
MMJJ_RS01050: MMJJ_RS01050 - COG1361 S-layer family protein, at 205,028 to 206,287
_RS01050
MMJJ_RS01055: MMJJ_RS01055 - hypothetical protein, at 206,298 to 206,780
_RS01055
MMJJ_RS01060: MMJJ_RS01060 - ABC transporter ATP-binding protein, at 206,788 to 207,492
_RS01060
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.153 kb on + strand, within MMJJ_RS01045 at 204.205 kb on - strand, within MMJJ_RS01045 at 204.326 kb on - strand, within MMJJ_RS01045 at 204.327 kb on + strand, within MMJJ_RS01045 at 204.327 kb on + strand, within MMJJ_RS01045 at 204.361 kb on + strand, within MMJJ_RS01045 at 204.482 kb on - strand, within MMJJ_RS01045 at 204.483 kb on + strand, within MMJJ_RS01045 at 204.505 kb on - strand, within MMJJ_RS01045 at 204.537 kb on + strand, within MMJJ_RS01045 at 204.722 kb on - strand, within MMJJ_RS01045 at 204.739 kb on + strand, within MMJJ_RS01045 at 204.739 kb on + strand, within MMJJ_RS01045 at 204.743 kb on + strand, within MMJJ_RS01045 at 204.753 kb on + strand, within MMJJ_RS01045 at 204.770 kb on - strand, within MMJJ_RS01045 at 204.770 kb on - strand, within MMJJ_RS01045 at 204.771 kb on + strand, within MMJJ_RS01045 at 204.771 kb on + strand, within MMJJ_RS01045 at 204.771 kb on + strand, within MMJJ_RS01045 at 204.771 kb on + strand, within MMJJ_RS01045 at 204.826 kb on + strand, within MMJJ_RS01045 at 204.827 kb on - strand, within MMJJ_RS01045 at 204.828 kb on + strand, within MMJJ_RS01045 at 204.836 kb on - strand, within MMJJ_RS01045 at 204.907 kb on - strand at 204.908 kb on + strand at 204.908 kb on + strand at 204.944 kb on + strand at 204.960 kb on + strand at 205.073 kb on - strand at 205.074 kb on + strand at 205.104 kb on + strand at 205.124 kb on - strand at 205.170 kb on - strand, within MMJJ_RS01050 at 205.170 kb on - strand, within MMJJ_RS01050 at 205.171 kb on + strand, within MMJJ_RS01050 at 205.171 kb on + strand, within MMJJ_RS01050 at 205.174 kb on - strand, within MMJJ_RS01050 at 205.175 kb on + strand, within MMJJ_RS01050 at 205.218 kb on + strand, within MMJJ_RS01050 at 205.245 kb on - strand, within MMJJ_RS01050 at 205.245 kb on - strand, within MMJJ_RS01050 at 205.245 kb on - strand, within MMJJ_RS01050 at 205.246 kb on + strand, within MMJJ_RS01050 at 205.246 kb on + strand, within MMJJ_RS01050 at 205.248 kb on - strand, within MMJJ_RS01050 at 205.248 kb on - strand, within MMJJ_RS01050 at 205.249 kb on + strand, within MMJJ_RS01050 at 205.249 kb on + strand, within MMJJ_RS01050 at 205.314 kb on - strand, within MMJJ_RS01050 at 205.314 kb on - strand, within MMJJ_RS01050 at 205.314 kb on - strand, within MMJJ_RS01050 at 205.314 kb on - strand, within MMJJ_RS01050 at 205.314 kb on - strand, within MMJJ_RS01050 at 205.315 kb on + strand, within MMJJ_RS01050 at 205.315 kb on + strand, within MMJJ_RS01050 at 205.315 kb on + strand, within MMJJ_RS01050 at 205.320 kb on - strand, within MMJJ_RS01050 at 205.320 kb on - strand, within MMJJ_RS01050 at 205.347 kb on + strand, within MMJJ_RS01050 at 205.347 kb on + strand, within MMJJ_RS01050 at 205.367 kb on - strand, within MMJJ_RS01050 at 205.393 kb on - strand, within MMJJ_RS01050 at 205.395 kb on - strand, within MMJJ_RS01050 at 205.395 kb on - strand, within MMJJ_RS01050 at 205.448 kb on + strand, within MMJJ_RS01050 at 205.449 kb on - strand, within MMJJ_RS01050 at 205.510 kb on - strand, within MMJJ_RS01050 at 205.510 kb on - strand, within MMJJ_RS01050 at 205.565 kb on - strand, within MMJJ_RS01050 at 205.566 kb on + strand, within MMJJ_RS01050 at 205.569 kb on - strand, within MMJJ_RS01050 at 205.570 kb on + strand, within MMJJ_RS01050 at 205.574 kb on + strand, within MMJJ_RS01050 at 205.574 kb on + strand, within MMJJ_RS01050 at 205.574 kb on + strand, within MMJJ_RS01050 at 205.577 kb on - strand, within MMJJ_RS01050 at 205.578 kb on + strand, within MMJJ_RS01050 at 205.584 kb on - strand, within MMJJ_RS01050 at 205.585 kb on + strand, within MMJJ_RS01050 at 205.599 kb on + strand, within MMJJ_RS01050 at 205.599 kb on + strand, within MMJJ_RS01050 at 205.656 kb on - strand, within MMJJ_RS01050 at 205.657 kb on + strand, within MMJJ_RS01050 at 205.657 kb on + strand, within MMJJ_RS01050 at 205.673 kb on + strand, within MMJJ_RS01050 at 205.737 kb on + strand, within MMJJ_RS01050 at 205.797 kb on + strand, within MMJJ_RS01050 at 205.847 kb on - strand, within MMJJ_RS01050 at 205.867 kb on + strand, within MMJJ_RS01050 at 205.904 kb on - strand, within MMJJ_RS01050 at 205.943 kb on - strand, within MMJJ_RS01050 at 205.954 kb on - strand, within MMJJ_RS01050 at 205.955 kb on + strand, within MMJJ_RS01050 at 205.966 kb on - strand, within MMJJ_RS01050 at 205.971 kb on + strand, within MMJJ_RS01050 at 206.001 kb on + strand, within MMJJ_RS01050 at 206.072 kb on - strand, within MMJJ_RS01050 at 206.072 kb on - strand, within MMJJ_RS01050 at 206.077 kb on + strand, within MMJJ_RS01050 at 206.120 kb on + strand, within MMJJ_RS01050 at 206.120 kb on + strand at 206.166 kb on + strand at 206.174 kb on + strand at 206.258 kb on + strand at 206.306 kb on - strand at 206.371 kb on - strand, within MMJJ_RS01055 at 206.473 kb on - strand, within MMJJ_RS01055 at 206.542 kb on + strand, within MMJJ_RS01055 at 206.587 kb on + strand at 206.667 kb on - strand, within MMJJ_RS01055 at 206.726 kb on + strand, within MMJJ_RS01055 at 206.843 kb on + strand at 206.964 kb on - strand, within MMJJ_RS01060 at 207.138 kb on - strand, within MMJJ_RS01060 at 207.207 kb on - strand, within MMJJ_RS01060 at 207.209 kb on - strand, within MMJJ_RS01060 at 207.209 kb on - strand, within MMJJ_RS01060 at 207.210 kb on + strand, within MMJJ_RS01060 at 207.221 kb on + strand, within MMJJ_RS01060 at 207.222 kb on - strand, within MMJJ_RS01060 at 207.258 kb on - strand, within MMJJ_RS01060 at 207.280 kb on + strand, within MMJJ_RS01060
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 204,153 + MMJJ_RS01045 0.29 -0.8 204,205 - MMJJ_RS01045 0.34 +1.3 204,326 - MMJJ_RS01045 0.44 -0.8 204,327 + MMJJ_RS01045 0.44 +0.8 204,327 + MMJJ_RS01045 0.44 +1.4 204,361 + MMJJ_RS01045 0.46 -0.1 204,482 - MMJJ_RS01045 0.56 +1.0 204,483 + MMJJ_RS01045 0.56 -1.8 204,505 - MMJJ_RS01045 0.58 -3.0 204,537 + MMJJ_RS01045 0.61 +0.8 204,722 - MMJJ_RS01045 0.76 -1.5 204,739 + MMJJ_RS01045 0.77 +0.9 204,739 + MMJJ_RS01045 0.77 +0.9 204,743 + MMJJ_RS01045 0.78 -0.4 204,753 + MMJJ_RS01045 0.79 +1.5 204,770 - MMJJ_RS01045 0.80 -1.3 204,770 - MMJJ_RS01045 0.80 -1.1 204,771 + MMJJ_RS01045 0.80 +0.3 204,771 + MMJJ_RS01045 0.80 +0.5 204,771 + MMJJ_RS01045 0.80 -0.1 204,771 + MMJJ_RS01045 0.80 +0.8 204,826 + MMJJ_RS01045 0.84 -0.5 204,827 - MMJJ_RS01045 0.85 +0.9 204,828 + MMJJ_RS01045 0.85 +0.9 204,836 - MMJJ_RS01045 0.85 +1.5 204,907 - -0.3 204,908 + -1.0 204,908 + +0.0 204,944 + -2.9 204,960 + -0.3 205,073 - +0.2 205,074 + +0.0 205,104 + -0.3 205,124 - +1.1 205,170 - MMJJ_RS01050 0.11 -2.4 205,170 - MMJJ_RS01050 0.11 -0.8 205,171 + MMJJ_RS01050 0.11 +0.3 205,171 + MMJJ_RS01050 0.11 -1.7 205,174 - MMJJ_RS01050 0.12 -1.6 205,175 + MMJJ_RS01050 0.12 -0.5 205,218 + MMJJ_RS01050 0.15 +0.6 205,245 - MMJJ_RS01050 0.17 -1.1 205,245 - MMJJ_RS01050 0.17 +0.0 205,245 - MMJJ_RS01050 0.17 +0.8 205,246 + MMJJ_RS01050 0.17 -0.7 205,246 + MMJJ_RS01050 0.17 -2.4 205,248 - MMJJ_RS01050 0.17 -0.2 205,248 - MMJJ_RS01050 0.17 +0.4 205,249 + MMJJ_RS01050 0.18 +0.3 205,249 + MMJJ_RS01050 0.18 +0.1 205,314 - MMJJ_RS01050 0.23 -1.1 205,314 - MMJJ_RS01050 0.23 +0.3 205,314 - MMJJ_RS01050 0.23 -2.4 205,314 - MMJJ_RS01050 0.23 -2.7 205,314 - MMJJ_RS01050 0.23 +1.7 205,315 + MMJJ_RS01050 0.23 +0.5 205,315 + MMJJ_RS01050 0.23 -0.4 205,315 + MMJJ_RS01050 0.23 +0.6 205,320 - MMJJ_RS01050 0.23 +0.2 205,320 - MMJJ_RS01050 0.23 -0.4 205,347 + MMJJ_RS01050 0.25 +1.1 205,347 + MMJJ_RS01050 0.25 -0.8 205,367 - MMJJ_RS01050 0.27 +1.1 205,393 - MMJJ_RS01050 0.29 -1.0 205,395 - MMJJ_RS01050 0.29 +0.6 205,395 - MMJJ_RS01050 0.29 -2.0 205,448 + MMJJ_RS01050 0.33 +0.2 205,449 - MMJJ_RS01050 0.33 +0.6 205,510 - MMJJ_RS01050 0.38 +1.3 205,510 - MMJJ_RS01050 0.38 +0.3 205,565 - MMJJ_RS01050 0.43 +0.1 205,566 + MMJJ_RS01050 0.43 -2.1 205,569 - MMJJ_RS01050 0.43 +0.4 205,570 + MMJJ_RS01050 0.43 -0.9 205,574 + MMJJ_RS01050 0.43 -0.3 205,574 + MMJJ_RS01050 0.43 +0.7 205,574 + MMJJ_RS01050 0.43 -2.9 205,577 - MMJJ_RS01050 0.44 +1.0 205,578 + MMJJ_RS01050 0.44 -1.1 205,584 - MMJJ_RS01050 0.44 +0.1 205,585 + MMJJ_RS01050 0.44 -1.6 205,599 + MMJJ_RS01050 0.45 +0.9 205,599 + MMJJ_RS01050 0.45 +0.5 205,656 - MMJJ_RS01050 0.50 -0.4 205,657 + MMJJ_RS01050 0.50 -0.1 205,657 + MMJJ_RS01050 0.50 +0.1 205,673 + MMJJ_RS01050 0.51 -1.2 205,737 + MMJJ_RS01050 0.56 +1.5 205,797 + MMJJ_RS01050 0.61 -0.2 205,847 - MMJJ_RS01050 0.65 +0.9 205,867 + MMJJ_RS01050 0.67 -2.7 205,904 - MMJJ_RS01050 0.70 -1.4 205,943 - MMJJ_RS01050 0.73 -0.3 205,954 - MMJJ_RS01050 0.73 +0.4 205,955 + MMJJ_RS01050 0.74 -0.5 205,966 - MMJJ_RS01050 0.74 +1.0 205,971 + MMJJ_RS01050 0.75 -1.3 206,001 + MMJJ_RS01050 0.77 +0.0 206,072 - MMJJ_RS01050 0.83 +1.9 206,072 - MMJJ_RS01050 0.83 -2.5 206,077 + MMJJ_RS01050 0.83 +1.2 206,120 + MMJJ_RS01050 0.87 -0.3 206,120 + +0.3 206,166 + +1.0 206,174 + -0.3 206,258 + +1.2 206,306 - +0.5 206,371 - MMJJ_RS01055 0.15 -0.5 206,473 - MMJJ_RS01055 0.36 -1.1 206,542 + MMJJ_RS01055 0.51 +0.6 206,587 + +0.3 206,667 - MMJJ_RS01055 0.76 +0.1 206,726 + MMJJ_RS01055 0.89 -0.3 206,843 + +0.3 206,964 - MMJJ_RS01060 0.25 +1.0 207,138 - MMJJ_RS01060 0.50 +0.5 207,207 - MMJJ_RS01060 0.59 +0.4 207,209 - MMJJ_RS01060 0.60 +0.2 207,209 - MMJJ_RS01060 0.60 -0.2 207,210 + MMJJ_RS01060 0.60 +1.3 207,221 + MMJJ_RS01060 0.61 +0.5 207,222 - MMJJ_RS01060 0.62 +0.2 207,258 - MMJJ_RS01060 0.67 +0.1 207,280 + MMJJ_RS01060 0.70 -0.8
Or see this region's nucleotide sequence