Experiment: McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.00833333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00455 and MMJJ_RS00460 are separated by 28 nucleotides MMJJ_RS00460 and MMJJ_RS00465 are separated by 9 nucleotides MMJJ_RS00465 and MMJJ_RS00470 are separated by 300 nucleotides
MMJJ_RS00455: MMJJ_RS00455 - NOG1 family protein, at 81,532 to 82,569
_RS00455
MMJJ_RS00460: MMJJ_RS00460 - selenouridine synthase SelU-like subunit, at 82,598 to 83,251
_RS00460
MMJJ_RS00465: MMJJ_RS00465 - selenouridine synthase SelU-like subunit, at 83,261 to 83,920
_RS00465
MMJJ_RS00470: MMJJ_RS00470 - SBBP repeat-containing protein, at 84,221 to 87,292
_RS00470
Position (kb) 83
84 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 82.430 kb on - strand, within MMJJ_RS00455 at 82.509 kb on + strand at 82.523 kb on - strand at 82.523 kb on - strand at 82.523 kb on - strand at 82.524 kb on + strand at 82.634 kb on - strand at 82.634 kb on - strand at 82.635 kb on + strand at 82.646 kb on - strand at 82.719 kb on + strand, within MMJJ_RS00460 at 82.740 kb on + strand, within MMJJ_RS00460 at 82.784 kb on - strand, within MMJJ_RS00460 at 82.784 kb on - strand, within MMJJ_RS00460 at 82.851 kb on - strand, within MMJJ_RS00460 at 82.875 kb on + strand, within MMJJ_RS00460 at 82.937 kb on - strand, within MMJJ_RS00460 at 82.938 kb on + strand, within MMJJ_RS00460 at 82.982 kb on + strand, within MMJJ_RS00460 at 83.027 kb on + strand, within MMJJ_RS00460 at 83.110 kb on - strand, within MMJJ_RS00460 at 83.222 kb on + strand at 83.302 kb on + strand at 83.352 kb on + strand, within MMJJ_RS00465 at 83.363 kb on - strand, within MMJJ_RS00465 at 83.430 kb on - strand, within MMJJ_RS00465 at 83.460 kb on + strand, within MMJJ_RS00465 at 83.612 kb on - strand, within MMJJ_RS00465 at 83.612 kb on - strand, within MMJJ_RS00465 at 83.612 kb on - strand, within MMJJ_RS00465 at 83.613 kb on + strand, within MMJJ_RS00465 at 83.613 kb on + strand, within MMJJ_RS00465 at 83.613 kb on + strand, within MMJJ_RS00465 at 83.613 kb on + strand, within MMJJ_RS00465 at 83.613 kb on + strand, within MMJJ_RS00465 at 83.614 kb on - strand, within MMJJ_RS00465 at 83.614 kb on - strand, within MMJJ_RS00465 at 83.614 kb on - strand, within MMJJ_RS00465 at 83.615 kb on + strand, within MMJJ_RS00465 at 83.619 kb on - strand, within MMJJ_RS00465 at 83.626 kb on + strand, within MMJJ_RS00465 at 83.626 kb on + strand, within MMJJ_RS00465 at 83.660 kb on - strand, within MMJJ_RS00465 at 83.660 kb on - strand, within MMJJ_RS00465 at 83.660 kb on - strand, within MMJJ_RS00465 at 83.661 kb on + strand, within MMJJ_RS00465 at 83.665 kb on - strand, within MMJJ_RS00465 at 83.665 kb on - strand, within MMJJ_RS00465 at 83.666 kb on + strand, within MMJJ_RS00465 at 83.702 kb on - strand, within MMJJ_RS00465 at 83.703 kb on + strand, within MMJJ_RS00465 at 83.717 kb on + strand, within MMJJ_RS00465 at 83.780 kb on - strand, within MMJJ_RS00465 at 83.812 kb on - strand, within MMJJ_RS00465 at 83.840 kb on - strand, within MMJJ_RS00465 at 83.841 kb on + strand, within MMJJ_RS00465 at 83.841 kb on + strand, within MMJJ_RS00465 at 83.841 kb on + strand, within MMJJ_RS00465 at 83.848 kb on + strand, within MMJJ_RS00465 at 83.925 kb on + strand at 83.935 kb on - strand at 83.990 kb on - strand at 84.010 kb on + strand at 84.010 kb on + strand at 84.037 kb on + strand at 84.041 kb on - strand at 84.041 kb on - strand at 84.041 kb on - strand at 84.042 kb on + strand at 84.073 kb on + strand at 84.163 kb on + strand at 84.166 kb on + strand at 84.166 kb on + strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.177 kb on + strand at 84.179 kb on - strand at 84.180 kb on + strand at 84.180 kb on + strand at 84.181 kb on - strand at 84.181 kb on - strand at 84.182 kb on + strand at 84.182 kb on + strand at 84.189 kb on + strand at 84.193 kb on - strand at 84.193 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.196 kb on - strand at 84.229 kb on + strand at 84.229 kb on + strand at 84.233 kb on - strand at 84.234 kb on + strand at 84.241 kb on + strand at 84.241 kb on + strand at 84.279 kb on - strand at 84.279 kb on - strand at 84.307 kb on - strand at 84.307 kb on - strand at 84.342 kb on - strand at 84.343 kb on + strand at 84.343 kb on + strand at 84.363 kb on + strand at 84.367 kb on - strand at 84.388 kb on - strand at 84.389 kb on + strand at 84.397 kb on + strand at 84.434 kb on + strand at 84.487 kb on - strand at 84.500 kb on - strand at 84.501 kb on + strand at 84.501 kb on + strand at 84.501 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.542 kb on - strand, within MMJJ_RS00470 at 84.542 kb on - strand, within MMJJ_RS00470 at 84.572 kb on + strand, within MMJJ_RS00470 at 84.585 kb on + strand, within MMJJ_RS00470 at 84.597 kb on - strand, within MMJJ_RS00470 at 84.598 kb on + strand, within MMJJ_RS00470 at 84.641 kb on - strand, within MMJJ_RS00470 at 84.641 kb on - strand, within MMJJ_RS00470 at 84.642 kb on + strand at 84.664 kb on - strand, within MMJJ_RS00470 at 84.664 kb on - strand, within MMJJ_RS00470 at 84.664 kb on - strand, within MMJJ_RS00470 at 84.665 kb on + strand, within MMJJ_RS00470 at 84.682 kb on - strand, within MMJJ_RS00470 at 84.682 kb on - strand, within MMJJ_RS00470 at 84.682 kb on - strand, within MMJJ_RS00470 at 84.682 kb on - strand, within MMJJ_RS00470 at 84.682 kb on - strand, within MMJJ_RS00470 at 84.683 kb on + strand, within MMJJ_RS00470 at 84.683 kb on + strand, within MMJJ_RS00470 at 84.683 kb on + strand, within MMJJ_RS00470 at 84.683 kb on + strand, within MMJJ_RS00470 at 84.683 kb on + strand, within MMJJ_RS00470 at 84.685 kb on + strand, within MMJJ_RS00470 at 84.685 kb on + strand, within MMJJ_RS00470 at 84.695 kb on - strand, within MMJJ_RS00470 at 84.739 kb on + strand, within MMJJ_RS00470 at 84.748 kb on - strand, within MMJJ_RS00470 at 84.788 kb on - strand, within MMJJ_RS00470 at 84.789 kb on + strand, within MMJJ_RS00470 at 84.808 kb on - strand, within MMJJ_RS00470 at 84.819 kb on - strand, within MMJJ_RS00470 at 84.831 kb on + strand, within MMJJ_RS00470 at 84.857 kb on - strand, within MMJJ_RS00470 at 84.858 kb on + strand, within MMJJ_RS00470 at 84.860 kb on + strand, within MMJJ_RS00470 at 84.862 kb on - strand, within MMJJ_RS00470 at 84.862 kb on - strand, within MMJJ_RS00470 at 84.863 kb on + strand, within MMJJ_RS00470 at 84.866 kb on - strand, within MMJJ_RS00470 at 84.866 kb on - strand, within MMJJ_RS00470 at 84.867 kb on + strand, within MMJJ_RS00470 at 84.867 kb on + strand at 84.907 kb on - strand, within MMJJ_RS00470 at 84.908 kb on + strand, within MMJJ_RS00470 at 84.919 kb on - strand, within MMJJ_RS00470
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.00833333333333333 mM remove 82,430 - MMJJ_RS00455 0.87 -1.8 82,509 + -1.3 82,523 - -2.8 82,523 - +1.3 82,523 - -0.1 82,524 + +0.1 82,634 - +0.1 82,634 - -0.1 82,635 + -0.7 82,646 - +0.5 82,719 + MMJJ_RS00460 0.19 -2.9 82,740 + MMJJ_RS00460 0.22 -2.1 82,784 - MMJJ_RS00460 0.28 +0.7 82,784 - MMJJ_RS00460 0.28 +3.9 82,851 - MMJJ_RS00460 0.39 -0.5 82,875 + MMJJ_RS00460 0.42 -0.1 82,937 - MMJJ_RS00460 0.52 -2.8 82,938 + MMJJ_RS00460 0.52 +0.3 82,982 + MMJJ_RS00460 0.59 +1.0 83,027 + MMJJ_RS00460 0.66 -1.2 83,110 - MMJJ_RS00460 0.78 -1.7 83,222 + -0.7 83,302 + -2.7 83,352 + MMJJ_RS00465 0.14 -2.0 83,363 - MMJJ_RS00465 0.15 -1.2 83,430 - MMJJ_RS00465 0.26 -0.1 83,460 + MMJJ_RS00465 0.30 +3.6 83,612 - MMJJ_RS00465 0.53 -1.0 83,612 - MMJJ_RS00465 0.53 -2.5 83,612 - MMJJ_RS00465 0.53 +0.2 83,613 + MMJJ_RS00465 0.53 -1.8 83,613 + MMJJ_RS00465 0.53 +0.3 83,613 + MMJJ_RS00465 0.53 +0.3 83,613 + MMJJ_RS00465 0.53 -2.7 83,613 + MMJJ_RS00465 0.53 +2.7 83,614 - MMJJ_RS00465 0.53 -0.9 83,614 - MMJJ_RS00465 0.53 +1.3 83,614 - MMJJ_RS00465 0.53 -2.4 83,615 + MMJJ_RS00465 0.54 -3.9 83,619 - MMJJ_RS00465 0.54 -3.0 83,626 + MMJJ_RS00465 0.55 -2.2 83,626 + MMJJ_RS00465 0.55 +0.1 83,660 - MMJJ_RS00465 0.60 +1.7 83,660 - MMJJ_RS00465 0.60 +0.3 83,660 - MMJJ_RS00465 0.60 -1.9 83,661 + MMJJ_RS00465 0.61 -0.1 83,665 - MMJJ_RS00465 0.61 +0.8 83,665 - MMJJ_RS00465 0.61 -1.7 83,666 + MMJJ_RS00465 0.61 +1.9 83,702 - MMJJ_RS00465 0.67 +1.2 83,703 + MMJJ_RS00465 0.67 -2.2 83,717 + MMJJ_RS00465 0.69 -1.4 83,780 - MMJJ_RS00465 0.79 -1.5 83,812 - MMJJ_RS00465 0.83 +1.1 83,840 - MMJJ_RS00465 0.88 -1.5 83,841 + MMJJ_RS00465 0.88 -3.8 83,841 + MMJJ_RS00465 0.88 +0.2 83,841 + MMJJ_RS00465 0.88 +0.4 83,848 + MMJJ_RS00465 0.89 -1.4 83,925 + -1.3 83,935 - -0.6 83,990 - -2.7 84,010 + -0.0 84,010 + +0.3 84,037 + -0.2 84,041 - +1.4 84,041 - -0.2 84,041 - +0.3 84,042 + +1.9 84,073 + +3.6 84,163 + -0.7 84,166 + -2.4 84,166 + -0.2 84,176 - -2.9 84,176 - -1.7 84,177 + -2.6 84,179 - -1.6 84,180 + +1.3 84,180 + +1.1 84,181 - -2.6 84,181 - -1.4 84,182 + +0.6 84,182 + +1.0 84,189 + -1.0 84,193 - +2.8 84,193 - +0.8 84,196 - -0.2 84,196 - +1.0 84,196 - -0.2 84,196 - +0.4 84,196 - -1.7 84,196 - -0.2 84,196 - -0.1 84,229 + +0.2 84,229 + +1.1 84,233 - +1.0 84,234 + -3.1 84,241 + -2.5 84,241 + -1.5 84,279 - -0.7 84,279 - +4.5 84,307 - +1.3 84,307 - +0.4 84,342 - -1.2 84,343 + -0.5 84,343 + -1.7 84,363 + -1.1 84,367 - -2.5 84,388 - +0.7 84,389 + +0.1 84,397 + +4.0 84,434 + +0.6 84,487 - +0.1 84,500 - -2.4 84,501 + -1.5 84,501 + +2.7 84,501 + +3.6 84,524 + +0.8 84,524 + -1.2 84,524 + -0.7 84,524 + -3.1 84,542 - MMJJ_RS00470 0.10 -3.1 84,542 - MMJJ_RS00470 0.10 +0.3 84,572 + MMJJ_RS00470 0.11 +1.7 84,585 + MMJJ_RS00470 0.12 +0.0 84,597 - MMJJ_RS00470 0.12 -2.0 84,598 + MMJJ_RS00470 0.12 +1.5 84,641 - MMJJ_RS00470 0.14 -3.5 84,641 - MMJJ_RS00470 0.14 -3.3 84,642 + -0.2 84,664 - MMJJ_RS00470 0.14 +0.1 84,664 - MMJJ_RS00470 0.14 -3.6 84,664 - MMJJ_RS00470 0.14 -1.7 84,665 + MMJJ_RS00470 0.14 -1.5 84,682 - MMJJ_RS00470 0.15 +2.5 84,682 - MMJJ_RS00470 0.15 -2.4 84,682 - MMJJ_RS00470 0.15 -1.6 84,682 - MMJJ_RS00470 0.15 -1.8 84,682 - MMJJ_RS00470 0.15 -4.1 84,683 + MMJJ_RS00470 0.15 -0.6 84,683 + MMJJ_RS00470 0.15 +1.7 84,683 + MMJJ_RS00470 0.15 +0.3 84,683 + MMJJ_RS00470 0.15 +1.4 84,683 + MMJJ_RS00470 0.15 +1.0 84,685 + MMJJ_RS00470 0.15 -1.7 84,685 + MMJJ_RS00470 0.15 +1.8 84,695 - MMJJ_RS00470 0.15 -2.8 84,739 + MMJJ_RS00470 0.17 +0.2 84,748 - MMJJ_RS00470 0.17 -2.8 84,788 - MMJJ_RS00470 0.18 -2.1 84,789 + MMJJ_RS00470 0.18 -0.4 84,808 - MMJJ_RS00470 0.19 +1.8 84,819 - MMJJ_RS00470 0.19 +6.7 84,831 + MMJJ_RS00470 0.20 -0.7 84,857 - MMJJ_RS00470 0.21 -1.7 84,858 + MMJJ_RS00470 0.21 -2.0 84,860 + MMJJ_RS00470 0.21 -0.9 84,862 - MMJJ_RS00470 0.21 +0.4 84,862 - MMJJ_RS00470 0.21 +1.5 84,863 + MMJJ_RS00470 0.21 +1.3 84,866 - MMJJ_RS00470 0.21 -1.6 84,866 - MMJJ_RS00470 0.21 +0.8 84,867 + MMJJ_RS00470 0.21 -1.5 84,867 + -0.2 84,907 - MMJJ_RS00470 0.22 +0.7 84,908 + MMJJ_RS00470 0.22 -1.2 84,919 - MMJJ_RS00470 0.23 -0.7
Or see this region's nucleotide sequence