Strain Fitness in Pantoea sp. MT58 around IAI47_21225

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
501,077	+		IAI47_21220	0.64	+0.2
501,078	-		IAI47_21220	0.64	-0.1
501,078	-		IAI47_21220	0.64	-0.7
501,169	+		IAI47_21220	0.72	-0.2
501,169	+		IAI47_21220	0.72	-0.3
501,169	+		IAI47_21220	0.72	+1.1
501,169	+		IAI47_21220	0.72	+0.1
501,169	+		IAI47_21220	0.72	+1.5
501,169	+		IAI47_21220	0.72	+2.6
501,169	+		IAI47_21220	0.72	+0.8
501,169	+		IAI47_21220	0.72	+3.2
501,169	+		IAI47_21220	0.72	+1.9
501,169	+		IAI47_21220	0.72	-0.0
501,169	+		IAI47_21220	0.72	-0.3
501,170	-		IAI47_21220	0.72	+0.4
501,170	-		IAI47_21220	0.72	-0.8
501,170	-		IAI47_21220	0.72	+0.1
501,170	-		IAI47_21220	0.72	+0.7
501,170	-		IAI47_21220	0.72	-0.4
501,170	-		IAI47_21220	0.72	-0.1
501,170	-		IAI47_21220	0.72	+0.3
501,170	-		IAI47_21220	0.72	-0.5
501,170	-		IAI47_21220	0.72	+2.7
501,170	-		IAI47_21220	0.72	+1.3
501,170	-		IAI47_21220	0.72	-0.3
501,173	-		IAI47_21220	0.72	+1.4
501,183	-		IAI47_21220	0.73	+1.0
501,211	-		IAI47_21220	0.76	-0.8
501,211	-		IAI47_21220	0.76	-0.6
501,319	-		IAI47_21220	0.85	-0.5
501,357	+		IAI47_21220	0.88	-0.1
501,358	-		IAI47_21220	0.88	-2.1
501,378	+		IAI47_21220	0.90	+2.6
501,388	-				+0.3
501,414	+				+0.2
501,493	+				-1.0
501,493	+				+1.4
501,493	+				-0.0
501,493	+				+0.7
501,494	-				+0.2
501,494	-				-1.1
501,494	-				-1.0
501,494	-				+1.7
501,506	+				-2.0
501,538	-				+3.3
501,538	-				-1.0
501,574	+				-1.3
501,587	+				-1.1
501,591	-				-0.4
501,591	-				+0.2
501,593	+				-0.1
501,593	+				-1.0
501,594	-				+2.2
501,602	+				-1.4
501,602	+				-0.8
501,603	-				+0.1
501,628	+				-0.0
501,628	+				+0.9
501,629	-				-0.5
501,634	-				+0.6
501,635	+				-0.6
501,635	+				-0.1
501,650	+				+0.1
501,651	-				-0.8
501,680	-				+1.6
501,680	-				-0.1
501,680	-				+0.9
501,683	+				-0.2
501,683	+				-0.0
501,683	+				-1.5
501,683	+				-0.3
501,683	+				+1.1
501,684	-				-0.5
501,684	-				+0.7
501,684	-				+0.1
501,684	-				+2.2
501,701	-				-1.0
501,736	-				+0.3
501,759	+				-0.6
501,805	+				-1.0
501,907	+				+0.1
501,908	-				-0.4
501,916	+				+0.4
501,982	+				-0.3
501,982	+				-1.7
501,982	+				-0.8
501,983	-				+1.2
502,006	-				+0.5
502,048	-				-0.6
502,048	-				+0.2
502,061	+				-0.6
502,072	+				+1.5
502,074	+				-1.3
502,074	+				-1.0
502,075	-				+0.5
502,075	-				-1.1
502,075	-				+1.3
502,115	-				+0.0
502,123	-				+0.3
502,123	-				+0.4
502,123	-				+0.7
502,125	-				+1.7
502,125	-				+2.5
502,125	-				-0.1
502,141	-				-0.9
502,141	-				+0.3
502,147	+				-0.6
502,191	+		IAI47_21225	0.11	+1.0
502,191	+		IAI47_21225	0.11	+0.3
502,192	-		IAI47_21225	0.11	+2.3
502,192	-		IAI47_21225	0.11	+0.3
502,192	-		IAI47_21225	0.11	-2.0
502,194	+		IAI47_21225	0.11	-0.8
502,194	+		IAI47_21225	0.11	+2.7
502,195	-		IAI47_21225	0.11	+1.1
502,195	-		IAI47_21225	0.11	+4.0
502,195	-		IAI47_21225	0.11	-1.1
502,195	-		IAI47_21225	0.11	-0.1
502,235	+		IAI47_21225	0.14	-0.8
502,235	+		IAI47_21225	0.14	+0.1
502,276	+		IAI47_21225	0.16	+1.2
502,276	+		IAI47_21225	0.16	-1.9
502,277	-		IAI47_21225	0.16	+0.9
502,277	-		IAI47_21225	0.16	-0.6
502,282	-		IAI47_21225	0.17	+0.5
502,282	-		IAI47_21225	0.17	+0.5
502,282	-		IAI47_21225	0.17	-1.1
502,291	+		IAI47_21225	0.17	+0.7
502,292	-		IAI47_21225	0.17	-2.0
502,326	+		IAI47_21225	0.19	-0.1
502,326	+		IAI47_21225	0.19	+0.6
502,326	+		IAI47_21225	0.19	-0.3
502,327	-		IAI47_21225	0.19	+1.1
502,327	-		IAI47_21225	0.19	+2.2
502,327	-		IAI47_21225	0.19	+0.9
502,327	-		IAI47_21225	0.19	-1.3
502,336	-		IAI47_21225	0.20	+1.1
502,353	+		IAI47_21225	0.21	+1.3
502,354	-		IAI47_21225	0.21	-1.1
502,354	-		IAI47_21225	0.21	+1.0
502,408	-		IAI47_21225	0.24	-0.7
502,438	-		IAI47_21225	0.26	-0.1
502,508	+		IAI47_21225	0.30	-1.3
502,517	+		IAI47_21225	0.31	-0.9
502,517	+		IAI47_21225	0.31	+3.9
502,517	+		IAI47_21225	0.31	+2.2
502,518	-		IAI47_21225	0.31	-0.6
502,518	-		IAI47_21225	0.31	+1.4
502,531	+		IAI47_21225	0.32	+0.4
502,532	-		IAI47_21225	0.32	-0.5
502,533	+		IAI47_21225	0.32	+1.3
502,533	+		IAI47_21225	0.32	-1.0
502,540	+		IAI47_21225	0.32	-0.7
502,540	+		IAI47_21225	0.32	+2.2
502,618	+		IAI47_21225	0.37	+2.9
502,619	-		IAI47_21225	0.37	+0.1
502,619	-		IAI47_21225	0.37	-1.4
502,619	-		IAI47_21225	0.37	+0.7
502,621	+		IAI47_21225	0.37	-0.2
502,621	+		IAI47_21225	0.37	+0.4
502,621	+		IAI47_21225	0.37	+2.4
502,622	-		IAI47_21225	0.37	-0.6
502,695	+		IAI47_21225	0.42	+1.3
502,695	+		IAI47_21225	0.42	+0.8
502,696	-		IAI47_21225	0.42	+3.0
502,696	-		IAI47_21225	0.42	-0.5
502,696	-		IAI47_21225	0.42	-0.6
502,817	-		IAI47_21225	0.49	+0.1
502,817	-		IAI47_21225	0.49	+0.7
502,897	+		IAI47_21225	0.54	-1.6
502,897	+		IAI47_21225	0.54	-0.5
502,897	+		IAI47_21225	0.54	+0.1
502,898	-		IAI47_21225	0.54	-0.9
502,898	-		IAI47_21225	0.54	-0.7
502,967	+		IAI47_21225	0.58	-0.9
502,967	+		IAI47_21225	0.58	+1.8
502,967	+		IAI47_21225	0.58	-0.1
502,967	+		IAI47_21225	0.58	+0.7
502,967	+		IAI47_21225	0.58	+0.8
502,967	+		IAI47_21225	0.58	-0.3
502,968	-		IAI47_21225	0.58	-0.1
502,968	-		IAI47_21225	0.58	+1.4
502,968	-		IAI47_21225	0.58	+0.0
502,968	-		IAI47_21225	0.58	-1.0
502,968	-		IAI47_21225	0.58	+0.4
503,017	-		IAI47_21225	0.61	+1.0
503,026	-		IAI47_21225	0.62	-1.8
503,071	+		IAI47_21225	0.65	-0.3
503,071	+		IAI47_21225	0.65	-0.0
503,072	-		IAI47_21225	0.65	-1.2
503,072	-		IAI47_21225	0.65	+1.7
503,072	-		IAI47_21225	0.65	-1.2
503,072	-		IAI47_21225	0.65	+0.7
503,072	-		IAI47_21225	0.65	+0.8
503,072	-		IAI47_21225	0.65	-0.5
503,104	+		IAI47_21225	0.67	+0.4
503,104	+		IAI47_21225	0.67	-0.9
503,104	+		IAI47_21225	0.67	-0.5
503,104	+		IAI47_21225	0.67	-0.5
503,104	+		IAI47_21225	0.67	-1.0
503,104	+		IAI47_21225	0.67	-1.7
503,104	+		IAI47_21225	0.67	+0.1
503,104	+		IAI47_21225	0.67	+0.9
503,104	+		IAI47_21225	0.67	-0.4
503,104	+		IAI47_21225	0.67	-0.5
503,104	+		IAI47_21225	0.67	+1.0
503,104	+		IAI47_21225	0.67	-0.6
503,105	-		IAI47_21225	0.67	+0.3
503,105	-		IAI47_21225	0.67	-1.8
503,105	-		IAI47_21225	0.67	+1.1
503,105	-		IAI47_21225	0.67	-1.1
503,105	-		IAI47_21225	0.67	-1.0
503,105	-		IAI47_21225	0.67	-1.2
503,106	+		IAI47_21225	0.67	+1.9
503,106	+		IAI47_21225	0.67	-1.1
503,106	+		IAI47_21225	0.67	-0.5
503,106	+		IAI47_21225	0.67	+0.8
503,106	+		IAI47_21225	0.67	-0.6
503,106	+		IAI47_21225	0.67	+1.7
503,106	+		IAI47_21225	0.67	+0.4
503,107	-		IAI47_21225	0.67	-0.5
503,107	-		IAI47_21225	0.67	+0.8
503,127	+		IAI47_21225	0.68	-0.5
503,128	-		IAI47_21225	0.68	+0.7
503,128	-		IAI47_21225	0.68	-0.9
503,128	-		IAI47_21225	0.68	-0.8
503,170	+		IAI47_21225	0.71	-2.3
503,170	+		IAI47_21225	0.71	-1.1
503,171	-		IAI47_21225	0.71	-0.9
503,171	-		IAI47_21225	0.71	-0.8
503,171	-		IAI47_21225	0.71	+0.6
503,171	-		IAI47_21225	0.71	+1.0
503,206	-		IAI47_21225	0.73	+2.1
503,223	+		IAI47_21225	0.74	-1.6
503,224	-		IAI47_21225	0.74	+0.2
503,224	-		IAI47_21225	0.74	-1.4
503,259	+		IAI47_21225	0.76	+0.4
503,262	+		IAI47_21225	0.76	+0.3
503,262	+		IAI47_21225	0.76	-0.1
503,262	+		IAI47_21225	0.76	+0.2
503,262	+		IAI47_21225	0.76	+0.6
503,262	+		IAI47_21225	0.76	-1.1
503,262	+		IAI47_21225	0.76	+0.4
503,263	-		IAI47_21225	0.76	-1.3
503,263	-		IAI47_21225	0.76	-0.4
503,263	-		IAI47_21225	0.76	-0.9
503,263	-		IAI47_21225	0.76	-0.3
503,263	-		IAI47_21225	0.76	+0.2
503,263	-		IAI47_21225	0.76	-0.9
503,263	-		IAI47_21225	0.76	-1.6
503,263	-		IAI47_21225	0.76	+1.9
503,263	-		IAI47_21225	0.76	-1.7
503,266	+		IAI47_21225	0.76	+0.5
503,266	+		IAI47_21225	0.76	+0.5
503,266	+		IAI47_21225	0.76	+0.2
503,267	-		IAI47_21225	0.76	+0.0
503,267	-		IAI47_21225	0.76	-2.3
503,267	-		IAI47_21225	0.76	+2.0
503,284	+		IAI47_21225	0.77	+1.9
503,285	-		IAI47_21225	0.78	-0.7
503,293	+		IAI47_21225	0.78	-0.8
503,293	+		IAI47_21225	0.78	+0.5
503,293	+		IAI47_21225	0.78	+1.1
503,294	-		IAI47_21225	0.78	-1.0
503,294	-		IAI47_21225	0.78	+0.6
503,294	-		IAI47_21225	0.78	+0.0
503,294	-		IAI47_21225	0.78	-0.5
503,295	+		IAI47_21225	0.78	+1.5
503,296	-		IAI47_21225	0.78	+0.4
503,296	-		IAI47_21225	0.78	-1.0
503,304	+		IAI47_21225	0.79	-0.4
503,359	+		IAI47_21225	0.82	+1.4
503,359	+		IAI47_21225	0.82	+0.3
503,359	+		IAI47_21225	0.82	-1.0
503,360	-		IAI47_21225	0.82	-0.5
503,360	-		IAI47_21225	0.82	-1.2
503,401	+		IAI47_21225	0.85	+0.7
503,401	+		IAI47_21225	0.85	+0.4
503,401	+		IAI47_21225	0.85	+1.8
503,401	+		IAI47_21225	0.85	+0.9
503,401	+		IAI47_21225	0.85	-0.3
503,401	+		IAI47_21225	0.85	+0.5
503,401	+		IAI47_21225	0.85	+1.9
503,402	-		IAI47_21225	0.85	-0.5
503,402	-		IAI47_21225	0.85	-0.5
503,419	+		IAI47_21225	0.86	+1.1
503,420	-		IAI47_21225	0.86	+0.7
503,424	+		IAI47_21225	0.86	+0.5
503,460	+		IAI47_21225	0.88	-0.4
503,460	+		IAI47_21225	0.88	-0.2
503,460	+		IAI47_21225	0.88	+0.8
503,460	+		IAI47_21225	0.88	+0.5
503,461	-		IAI47_21225	0.88	+0.3
503,461	-		IAI47_21225	0.88	-1.5
503,461	-		IAI47_21225	0.88	+1.4
503,492	-				+1.7
503,503	+				+0.1
503,503	+				+1.3
503,504	-				+0.4
503,504	-				-1.8
503,504	-				+0.1
503,504	-				-0.3
503,540	-				-0.5
503,562	+				+0.7
503,563	-				-0.8
503,575	-				-1.9
503,575	-				-0.0
503,599	+				+1.2
503,599	+				+1.5
503,599	+				-0.2
503,599	+				+0.2
503,600	-				-1.2
503,600	-				+0.9
503,617	-				+0.4
503,617	-				-0.6
503,617	-				-1.8
503,618	+				+3.3
503,618	+				-0.2
503,618	+				-0.5
503,619	-				+1.1
503,619	-				+0.5
503,619	-				-1.1
503,619	-				-0.1
503,619	-				+0.1
503,619	-				-0.1
503,619	-				-0.3
503,619	-				+1.1
503,637	+				+4.0
503,638	-				+3.0
503,638	-				+0.4
503,663	+				-0.8
503,664	-				+1.7
503,684	-				-2.1
503,700	-				+1.9
503,730	-				+1.5
503,749	+				-0.1
503,752	+				+0.0
503,752	+				+0.8
503,752	+				+0.1
503,753	-				-0.7
503,773	+				-1.1
503,774	-				+0.1
503,774	-				+1.5
503,774	-				+0.7
503,796	+				-0.1
503,796	+				-0.7
503,796	+				+2.0
503,837	+				+0.7
503,838	-				+0.9
503,848	+				+0.4
503,849	-				+0.5
503,849	-				-0.0
503,884	+				-0.9
503,885	-				-2.2
503,885	-				-0.3
503,963	+				-1.1
503,963	+				-0.6
503,963	+				-0.4
503,963	+				-1.0
503,963	+				-1.4
503,964	-				+0.2
503,964	-				-2.6
503,964	-				-0.4
503,964	-				-0.7
503,964	-				+1.3
503,983	+				+0.8
504,094	+				+0.7
504,154	-				+0.9
504,154	-				+0.2
504,169	+				-1.7
504,170	-				+2.5
504,170	-				+0.5
504,181	+				+0.8
504,222	+				-1.2
504,222	+				+1.1
504,261	-				+3.4
504,261	-				+0.5
504,309	-		IAI47_21230	0.15	-0.1
504,349	+		IAI47_21230	0.22	-1.2
504,349	+		IAI47_21230	0.22	-1.3
504,349	+		IAI47_21230	0.22	+3.5
504,349	+		IAI47_21230	0.22	-2.3
504,349	+		IAI47_21230	0.22	+0.5
504,349	+		IAI47_21230	0.22	+0.5
504,350	-		IAI47_21230	0.23	+0.5
504,350	-		IAI47_21230	0.23	-1.3
504,350	-		IAI47_21230	0.23	+0.4
504,350	-		IAI47_21230	0.23	+0.8
504,350	-		IAI47_21230	0.23	-0.7
504,360	-		IAI47_21230	0.24	+0.9
504,360	-		IAI47_21230	0.24	-1.1
504,378	+		IAI47_21230	0.28	+0.5
504,378	+		IAI47_21230	0.28	+0.9
504,378	+		IAI47_21230	0.28	-2.3
504,378	+		IAI47_21230	0.28	-0.6
504,378	+		IAI47_21230	0.28	+1.3
504,379	-		IAI47_21230	0.28	+1.3
504,379	-		IAI47_21230	0.28	+0.4
504,433	+		IAI47_21230	0.37	-2.0
504,433	+		IAI47_21230	0.37	-0.0
504,434	-		IAI47_21230	0.37	+2.0
504,434	-		IAI47_21230	0.37	-0.5
504,434	-		IAI47_21230	0.37	-0.6
504,439	+		IAI47_21230	0.38	-0.8
504,439	+		IAI47_21230	0.38	-1.8
504,440	-		IAI47_21230	0.38	-1.3
504,440	-		IAI47_21230	0.38	+0.6
504,440	-		IAI47_21230	0.38	+3.2
504,440	-		IAI47_21230	0.38	+1.7
504,454	+		IAI47_21230	0.41	-0.9
504,454	+		IAI47_21230	0.41	-2.4
504,454	+		IAI47_21230	0.41	+0.8
504,455	-		IAI47_21230	0.41	+2.8
504,455	-		IAI47_21230	0.41	+1.7
504,458	+		IAI47_21230	0.42	-1.3
504,458	+		IAI47_21230	0.42	-0.5
504,458	+		IAI47_21230	0.42	+0.4
504,459	-		IAI47_21230	0.42	+0.1
504,459	-		IAI47_21230	0.42	+1.1
504,478	+		IAI47_21230	0.45	-0.5
504,544	+		IAI47_21230	0.57	-1.4
504,602	-		IAI47_21230	0.67	-0.2