Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20805 and IAI47_20810 are separated by 15 nucleotides IAI47_20810 and IAI47_20815 are separated by 3 nucleotides IAI47_20815 and IAI47_20820 are separated by 21 nucleotides
IAI47_20805: IAI47_20805 - ornithine cyclodeaminase family protein, at 406,467 to 407,438
_20805
IAI47_20810: IAI47_20810 - carboxymuconolactone decarboxylase family protein, at 407,454 to 407,999
_20810
IAI47_20815: IAI47_20815 - bacilysin biosynthesis protein BacA, at 408,003 to 408,590
_20815
IAI47_20820: IAI47_20820 - branched-chain amino acid transaminase, at 408,612 to 409,583
_20820
Position (kb) 407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 406.469 kb on - strand at 406.478 kb on + strand at 406.479 kb on - strand at 406.556 kb on + strand at 406.557 kb on - strand at 406.557 kb on - strand at 406.617 kb on + strand, within IAI47_20805 at 406.617 kb on + strand, within IAI47_20805 at 406.617 kb on + strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.644 kb on + strand, within IAI47_20805 at 406.644 kb on + strand, within IAI47_20805 at 406.647 kb on + strand, within IAI47_20805 at 406.647 kb on + strand, within IAI47_20805 at 406.648 kb on - strand, within IAI47_20805 at 406.648 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.671 kb on + strand, within IAI47_20805 at 406.672 kb on - strand, within IAI47_20805 at 406.715 kb on - strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.733 kb on - strand, within IAI47_20805 at 406.736 kb on + strand, within IAI47_20805 at 406.736 kb on + strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.787 kb on + strand, within IAI47_20805 at 406.787 kb on + strand, within IAI47_20805 at 406.788 kb on - strand, within IAI47_20805 at 406.788 kb on - strand, within IAI47_20805 at 406.847 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.916 kb on - strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.113 kb on - strand, within IAI47_20805 at 407.170 kb on + strand, within IAI47_20805 at 407.170 kb on + strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.198 kb on + strand, within IAI47_20805 at 407.198 kb on + strand, within IAI47_20805 at 407.199 kb on - strand, within IAI47_20805 at 407.199 kb on - strand, within IAI47_20805 at 407.272 kb on + strand, within IAI47_20805 at 407.272 kb on + strand, within IAI47_20805 at 407.273 kb on - strand, within IAI47_20805 at 407.336 kb on + strand, within IAI47_20805 at 407.400 kb on + strand at 407.400 kb on + strand at 407.429 kb on + strand at 407.429 kb on + strand at 407.430 kb on - strand at 407.455 kb on + strand at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.511 kb on - strand, within IAI47_20810 at 407.511 kb on - strand, within IAI47_20810 at 407.575 kb on + strand, within IAI47_20810 at 407.575 kb on + strand, within IAI47_20810 at 407.576 kb on - strand, within IAI47_20810 at 407.613 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.655 kb on + strand, within IAI47_20810 at 407.656 kb on - strand, within IAI47_20810 at 407.656 kb on - strand, within IAI47_20810 at 407.729 kb on + strand, within IAI47_20810 at 407.730 kb on - strand, within IAI47_20810 at 407.730 kb on - strand, within IAI47_20810 at 407.747 kb on + strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.763 kb on - strand, within IAI47_20810 at 407.764 kb on + strand, within IAI47_20810 at 407.764 kb on + strand, within IAI47_20810 at 407.861 kb on - strand, within IAI47_20810 at 407.861 kb on - strand, within IAI47_20810 at 407.988 kb on - strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.048 kb on + strand at 408.049 kb on - strand at 408.049 kb on - strand at 408.049 kb on - strand at 408.075 kb on - strand, within IAI47_20815 at 408.116 kb on + strand, within IAI47_20815 at 408.158 kb on + strand, within IAI47_20815 at 408.158 kb on + strand, within IAI47_20815 at 408.159 kb on - strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.190 kb on - strand, within IAI47_20815 at 408.190 kb on - strand, within IAI47_20815 at 408.275 kb on + strand, within IAI47_20815 at 408.276 kb on - strand, within IAI47_20815 at 408.304 kb on + strand, within IAI47_20815 at 408.305 kb on - strand, within IAI47_20815 at 408.318 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.364 kb on + strand, within IAI47_20815 at 408.381 kb on + strand, within IAI47_20815 at 408.381 kb on + strand, within IAI47_20815 at 408.382 kb on - strand, within IAI47_20815 at 408.385 kb on - strand, within IAI47_20815 at 408.404 kb on + strand, within IAI47_20815 at 408.424 kb on + strand, within IAI47_20815 at 408.424 kb on + strand, within IAI47_20815 at 408.425 kb on - strand, within IAI47_20815 at 408.446 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.502 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.529 kb on - strand, within IAI47_20815 at 408.533 kb on + strand at 408.533 kb on + strand at 408.534 kb on - strand at 408.534 kb on - strand at 408.534 kb on - strand at 408.545 kb on - strand at 408.638 kb on + strand at 408.638 kb on + strand at 408.649 kb on - strand at 408.649 kb on - strand at 408.716 kb on + strand, within IAI47_20820 at 408.716 kb on + strand, within IAI47_20820 at 408.717 kb on - strand, within IAI47_20820 at 408.717 kb on - strand, within IAI47_20820 at 408.754 kb on - strand, within IAI47_20820 at 408.813 kb on + strand, within IAI47_20820 at 408.813 kb on + strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.851 kb on + strand, within IAI47_20820 at 408.881 kb on + strand, within IAI47_20820 at 408.881 kb on + strand, within IAI47_20820 at 408.882 kb on - strand, within IAI47_20820 at 408.894 kb on - strand, within IAI47_20820 at 408.894 kb on - strand, within IAI47_20820 at 408.914 kb on + strand, within IAI47_20820 at 408.914 kb on + strand, within IAI47_20820 at 408.915 kb on - strand, within IAI47_20820 at 408.970 kb on + strand, within IAI47_20820 at 408.971 kb on - strand, within IAI47_20820 at 408.971 kb on - strand, within IAI47_20820 at 408.990 kb on + strand, within IAI47_20820 at 408.990 kb on + strand, within IAI47_20820
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 406,469 - +1.0 406,478 + -0.6 406,479 - +4.9 406,556 + +0.2 406,557 - -0.0 406,557 - +1.3 406,617 + IAI47_20805 0.15 -1.0 406,617 + IAI47_20805 0.15 -1.4 406,617 + IAI47_20805 0.15 -0.6 406,618 - IAI47_20805 0.16 -0.5 406,618 - IAI47_20805 0.16 -0.6 406,618 - IAI47_20805 0.16 +0.3 406,644 + IAI47_20805 0.18 -0.8 406,644 + IAI47_20805 0.18 -1.2 406,647 + IAI47_20805 0.19 +0.3 406,647 + IAI47_20805 0.19 -1.4 406,648 - IAI47_20805 0.19 -1.5 406,648 - IAI47_20805 0.19 -1.2 406,668 - IAI47_20805 0.21 +1.2 406,668 - IAI47_20805 0.21 -0.0 406,668 - IAI47_20805 0.21 +0.1 406,671 + IAI47_20805 0.21 -0.8 406,672 - IAI47_20805 0.21 -1.4 406,715 - IAI47_20805 0.26 -0.0 406,732 + IAI47_20805 0.27 -0.7 406,732 + IAI47_20805 0.27 -0.2 406,732 + IAI47_20805 0.27 +0.3 406,732 + IAI47_20805 0.27 -0.1 406,733 - IAI47_20805 0.27 -0.9 406,736 + IAI47_20805 0.28 +1.1 406,736 + IAI47_20805 0.28 +0.7 406,737 - IAI47_20805 0.28 -0.4 406,737 - IAI47_20805 0.28 -0.3 406,737 - IAI47_20805 0.28 +1.6 406,787 + IAI47_20805 0.33 +2.9 406,787 + IAI47_20805 0.33 +1.7 406,788 - IAI47_20805 0.33 +0.1 406,788 - IAI47_20805 0.33 +3.4 406,847 + IAI47_20805 0.39 +0.3 406,915 + IAI47_20805 0.46 -0.6 406,915 + IAI47_20805 0.46 +0.4 406,915 + IAI47_20805 0.46 +1.9 406,916 - IAI47_20805 0.46 +1.2 406,976 + IAI47_20805 0.52 +2.1 406,976 + IAI47_20805 0.52 +2.0 406,976 + IAI47_20805 0.52 +0.5 406,976 + IAI47_20805 0.52 -1.6 406,976 + IAI47_20805 0.52 +2.3 406,976 + IAI47_20805 0.52 +1.9 406,977 - IAI47_20805 0.52 +1.7 406,977 - IAI47_20805 0.52 -0.1 406,977 - IAI47_20805 0.52 +0.9 406,978 + IAI47_20805 0.53 +3.1 406,978 + IAI47_20805 0.53 -0.5 406,978 + IAI47_20805 0.53 +3.2 406,978 + IAI47_20805 0.53 -0.6 406,978 + IAI47_20805 0.53 -1.2 406,978 + IAI47_20805 0.53 -0.5 406,979 - IAI47_20805 0.53 -1.0 406,979 - IAI47_20805 0.53 +0.4 406,979 - IAI47_20805 0.53 -0.8 406,979 - IAI47_20805 0.53 -0.2 406,979 - IAI47_20805 0.53 +0.3 406,979 - IAI47_20805 0.53 -1.3 406,979 - IAI47_20805 0.53 +0.8 406,979 - IAI47_20805 0.53 -0.6 406,979 - IAI47_20805 0.53 +1.1 406,979 - IAI47_20805 0.53 -1.9 407,112 + IAI47_20805 0.66 +0.6 407,112 + IAI47_20805 0.66 -1.1 407,112 + IAI47_20805 0.66 +1.1 407,112 + IAI47_20805 0.66 +0.1 407,113 - IAI47_20805 0.66 -1.2 407,170 + IAI47_20805 0.72 +1.5 407,170 + IAI47_20805 0.72 +0.1 407,181 - IAI47_20805 0.73 +1.2 407,181 - IAI47_20805 0.73 +0.5 407,181 - IAI47_20805 0.73 +1.6 407,181 - IAI47_20805 0.73 -1.6 407,181 - IAI47_20805 0.73 -0.1 407,198 + IAI47_20805 0.75 -1.5 407,198 + IAI47_20805 0.75 +1.3 407,199 - IAI47_20805 0.75 -0.5 407,199 - IAI47_20805 0.75 -0.8 407,272 + IAI47_20805 0.83 -1.4 407,272 + IAI47_20805 0.83 -0.2 407,273 - IAI47_20805 0.83 -0.9 407,336 + IAI47_20805 0.89 +2.7 407,400 + +0.3 407,400 + -0.2 407,429 + +1.1 407,429 + -0.6 407,430 - -1.0 407,455 + +1.3 407,510 + IAI47_20810 0.10 +1.5 407,510 + IAI47_20810 0.10 +0.4 407,510 + IAI47_20810 0.10 +0.9 407,510 + IAI47_20810 0.10 +3.0 407,511 - IAI47_20810 0.10 +0.4 407,511 - IAI47_20810 0.10 -1.2 407,575 + IAI47_20810 0.22 +3.6 407,575 + IAI47_20810 0.22 +1.1 407,576 - IAI47_20810 0.22 +1.0 407,613 + IAI47_20810 0.29 -0.9 407,653 + IAI47_20810 0.36 -1.3 407,653 + IAI47_20810 0.36 +0.5 407,653 + IAI47_20810 0.36 +0.0 407,653 + IAI47_20810 0.36 +0.4 407,653 + IAI47_20810 0.36 +0.2 407,654 - IAI47_20810 0.37 +2.7 407,654 - IAI47_20810 0.37 -0.6 407,654 - IAI47_20810 0.37 +2.7 407,654 - IAI47_20810 0.37 -0.7 407,654 - IAI47_20810 0.37 +0.4 407,655 + IAI47_20810 0.37 -0.6 407,656 - IAI47_20810 0.37 +0.1 407,656 - IAI47_20810 0.37 +1.5 407,729 + IAI47_20810 0.50 -0.5 407,730 - IAI47_20810 0.51 +0.8 407,730 - IAI47_20810 0.51 -2.0 407,747 + IAI47_20810 0.54 -1.5 407,748 - IAI47_20810 0.54 +0.1 407,748 - IAI47_20810 0.54 +1.1 407,748 - IAI47_20810 0.54 -0.4 407,748 - IAI47_20810 0.54 -0.3 407,763 - IAI47_20810 0.57 -0.3 407,764 + IAI47_20810 0.57 -0.2 407,764 + IAI47_20810 0.57 +0.8 407,861 - IAI47_20810 0.75 +2.8 407,861 - IAI47_20810 0.75 -0.0 407,988 - +1.1 408,044 + +0.9 408,044 + +0.3 408,044 + +0.4 408,044 + -1.9 408,044 + -1.6 408,044 + -1.1 408,044 + +0.9 408,044 + +0.7 408,044 + -1.6 408,044 + +0.6 408,044 + +0.7 408,044 + +2.1 408,045 - -0.1 408,045 - -1.3 408,045 - +1.1 408,045 - +0.1 408,045 - +0.0 408,045 - +0.4 408,045 - +0.3 408,045 - -1.5 408,045 - +0.2 408,045 - -1.6 408,045 - +1.9 408,045 - +0.1 408,045 - -0.9 408,045 - -0.9 408,048 + +0.6 408,049 - +0.7 408,049 - +0.4 408,049 - +0.4 408,075 - IAI47_20815 0.12 +1.3 408,116 + IAI47_20815 0.19 -0.3 408,158 + IAI47_20815 0.26 +0.7 408,158 + IAI47_20815 0.26 +0.6 408,159 - IAI47_20815 0.27 +1.4 408,185 + IAI47_20815 0.31 -0.7 408,185 + IAI47_20815 0.31 +0.4 408,185 + IAI47_20815 0.31 -0.6 408,185 + IAI47_20815 0.31 -1.3 408,185 + IAI47_20815 0.31 +1.8 408,186 - IAI47_20815 0.31 -2.1 408,186 - IAI47_20815 0.31 -1.0 408,186 - IAI47_20815 0.31 -1.6 408,186 - IAI47_20815 0.31 -1.4 408,186 - IAI47_20815 0.31 +1.1 408,190 - IAI47_20815 0.32 +1.9 408,190 - IAI47_20815 0.32 -0.6 408,275 + IAI47_20815 0.46 +1.1 408,276 - IAI47_20815 0.46 +0.2 408,304 + IAI47_20815 0.51 +0.5 408,305 - IAI47_20815 0.51 +0.5 408,318 + IAI47_20815 0.54 +1.8 408,343 + IAI47_20815 0.58 -1.0 408,343 + IAI47_20815 0.58 -0.0 408,343 + IAI47_20815 0.58 -1.1 408,364 + IAI47_20815 0.61 -0.6 408,381 + IAI47_20815 0.64 +1.5 408,381 + IAI47_20815 0.64 -0.9 408,382 - IAI47_20815 0.64 +0.5 408,385 - IAI47_20815 0.65 -0.2 408,404 + IAI47_20815 0.68 +0.4 408,424 + IAI47_20815 0.72 +0.6 408,424 + IAI47_20815 0.72 +0.5 408,425 - IAI47_20815 0.72 -1.7 408,446 + IAI47_20815 0.75 +0.8 408,463 + IAI47_20815 0.78 +0.1 408,463 + IAI47_20815 0.78 +2.0 408,463 + IAI47_20815 0.78 +1.2 408,463 + IAI47_20815 0.78 -0.3 408,463 + IAI47_20815 0.78 +0.7 408,463 + IAI47_20815 0.78 +0.6 408,502 + IAI47_20815 0.85 +0.4 408,528 + IAI47_20815 0.89 -0.3 408,528 + IAI47_20815 0.89 -1.6 408,528 + IAI47_20815 0.89 -0.7 408,529 - IAI47_20815 0.89 +0.2 408,533 + -1.0 408,533 + -0.9 408,534 - -0.1 408,534 - -0.3 408,534 - +0.7 408,545 - +2.0 408,638 + +1.0 408,638 + -0.5 408,649 - +1.7 408,649 - +1.3 408,716 + IAI47_20820 0.11 +1.1 408,716 + IAI47_20820 0.11 -0.8 408,717 - IAI47_20820 0.11 +2.1 408,717 - IAI47_20820 0.11 -1.8 408,754 - IAI47_20820 0.15 -1.0 408,813 + IAI47_20820 0.21 +1.4 408,813 + IAI47_20820 0.21 +0.2 408,814 - IAI47_20820 0.21 -1.3 408,814 - IAI47_20820 0.21 -1.1 408,814 - IAI47_20820 0.21 -0.7 408,851 + IAI47_20820 0.25 -0.4 408,881 + IAI47_20820 0.28 -0.4 408,881 + IAI47_20820 0.28 -1.0 408,882 - IAI47_20820 0.28 +0.1 408,894 - IAI47_20820 0.29 -0.3 408,894 - IAI47_20820 0.29 -0.3 408,914 + IAI47_20820 0.31 -1.6 408,914 + IAI47_20820 0.31 -0.4 408,915 - IAI47_20820 0.31 -0.0 408,970 + IAI47_20820 0.37 +1.6 408,971 - IAI47_20820 0.37 -0.9 408,971 - IAI47_20820 0.37 -0.6 408,990 + IAI47_20820 0.39 +0.7 408,990 + IAI47_20820 0.39 -0.5
Or see this region's nucleotide sequence