Strain Fitness in Pantoea sp. MT58 around IAI47_20045

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20035 and IAI47_20040 are separated by 9 nucleotidesIAI47_20040 and IAI47_20045 overlap by 17 nucleotidesIAI47_20045 and IAI47_20050 overlap by 4 nucleotides IAI47_20035: IAI47_20035 - GNAT family N-acetyltransferase, at 239,865 to 240,377 _20035 IAI47_20040: IAI47_20040 - amino acid ABC transporter permease, at 240,387 to 241,313 _20040 IAI47_20045: IAI47_20045 - amino acid ABC transporter ATP-binding protein, at 241,297 to 242,091 _20045 IAI47_20050: IAI47_20050 - ABC transporter substrate-binding protein, at 242,088 to 242,987 _20050 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 240.335 kb on + strandat 240.336 kb on - strandat 240.339 kb on - strandat 240.354 kb on + strandat 240.357 kb on - strandat 240.375 kb on + strandat 240.375 kb on + strandat 240.375 kb on + strandat 240.376 kb on - strandat 240.376 kb on - strandat 240.376 kb on - strandat 240.406 kb on + strandat 240.406 kb on + strandat 240.406 kb on + strandat 240.406 kb on + strandat 240.406 kb on + strandat 240.407 kb on - strandat 240.464 kb on + strandat 240.464 kb on + strandat 240.465 kb on - strandat 240.466 kb on + strandat 240.466 kb on + strandat 240.466 kb on + strandat 240.598 kb on + strand, within IAI47_20040at 240.598 kb on + strand, within IAI47_20040at 240.598 kb on + strand, within IAI47_20040at 240.598 kb on + strand, within IAI47_20040at 240.598 kb on + strand, within IAI47_20040at 240.599 kb on - strand, within IAI47_20040at 240.599 kb on - strand, within IAI47_20040at 240.599 kb on - strand, within IAI47_20040at 240.678 kb on + strand, within IAI47_20040at 240.678 kb on + strand, within IAI47_20040at 240.678 kb on + strand, within IAI47_20040at 240.678 kb on + strand, within IAI47_20040at 240.678 kb on + strand, within IAI47_20040at 240.680 kb on + strand, within IAI47_20040at 240.680 kb on + strand, within IAI47_20040at 240.680 kb on + strand, within IAI47_20040at 240.680 kb on + strand, within IAI47_20040at 240.680 kb on + strand, within IAI47_20040at 240.681 kb on - strand, within IAI47_20040at 240.681 kb on - strand, within IAI47_20040at 240.681 kb on - strand, within IAI47_20040at 240.723 kb on - strand, within IAI47_20040at 240.723 kb on - strand, within IAI47_20040at 240.731 kb on + strand, within IAI47_20040at 240.732 kb on - strand, within IAI47_20040at 240.741 kb on + strand, within IAI47_20040at 240.741 kb on + strand, within IAI47_20040at 240.741 kb on + strand, within IAI47_20040at 240.741 kb on + strand, within IAI47_20040at 240.747 kb on + strand, within IAI47_20040at 240.747 kb on + strand, within IAI47_20040at 240.798 kb on + strand, within IAI47_20040at 240.798 kb on + strand, within IAI47_20040at 240.814 kb on + strand, within IAI47_20040at 240.815 kb on - strand, within IAI47_20040at 240.815 kb on - strand, within IAI47_20040at 240.815 kb on - strand, within IAI47_20040at 240.815 kb on - strand, within IAI47_20040at 240.815 kb on - strand, within IAI47_20040at 240.867 kb on + strand, within IAI47_20040at 240.868 kb on - strand, within IAI47_20040at 240.868 kb on - strand, within IAI47_20040at 240.882 kb on - strand, within IAI47_20040at 240.920 kb on - strand, within IAI47_20040at 240.920 kb on - strand, within IAI47_20040at 240.998 kb on + strand, within IAI47_20040at 240.998 kb on + strand, within IAI47_20040at 240.999 kb on - strand, within IAI47_20040at 240.999 kb on - strand, within IAI47_20040at 241.014 kb on - strand, within IAI47_20040at 241.053 kb on + strand, within IAI47_20040at 241.053 kb on + strand, within IAI47_20040at 241.053 kb on + strand, within IAI47_20040at 241.054 kb on - strand, within IAI47_20040at 241.054 kb on - strand, within IAI47_20040at 241.080 kb on + strand, within IAI47_20040at 241.080 kb on + strand, within IAI47_20040at 241.081 kb on - strand, within IAI47_20040at 241.081 kb on - strand, within IAI47_20040at 241.098 kb on + strand, within IAI47_20040at 241.098 kb on + strand, within IAI47_20040at 241.099 kb on - strand, within IAI47_20040at 241.099 kb on - strand, within IAI47_20040at 241.099 kb on - strand, within IAI47_20040at 241.106 kb on + strand, within IAI47_20040at 241.106 kb on + strand, within IAI47_20040at 241.107 kb on - strand, within IAI47_20040at 241.107 kb on - strand, within IAI47_20040at 241.107 kb on - strand, within IAI47_20040at 241.149 kb on + strand, within IAI47_20040at 241.157 kb on + strand, within IAI47_20040at 241.157 kb on + strand, within IAI47_20040at 241.158 kb on - strand, within IAI47_20040at 241.158 kb on - strand, within IAI47_20040at 241.158 kb on - strand, within IAI47_20040at 241.160 kb on + strand, within IAI47_20040at 241.160 kb on + strand, within IAI47_20040at 241.161 kb on - strand, within IAI47_20040at 241.168 kb on + strand, within IAI47_20040at 241.168 kb on + strand, within IAI47_20040at 241.168 kb on + strand, within IAI47_20040at 241.168 kb on + strand, within IAI47_20040at 241.169 kb on - strand, within IAI47_20040at 241.169 kb on - strand, within IAI47_20040at 241.185 kb on + strand, within IAI47_20040at 241.185 kb on + strand, within IAI47_20040at 241.186 kb on - strand, within IAI47_20040at 241.186 kb on - strand, within IAI47_20040at 241.188 kb on - strand, within IAI47_20040at 241.188 kb on - strand, within IAI47_20040at 241.316 kb on - strandat 241.347 kb on + strandat 241.347 kb on + strandat 241.348 kb on - strandat 241.348 kb on - strandat 241.348 kb on - strandat 241.362 kb on + strandat 241.363 kb on - strandat 241.375 kb on - strandat 241.380 kb on + strand, within IAI47_20045at 241.380 kb on + strand, within IAI47_20045at 241.380 kb on + strand, within IAI47_20045at 241.381 kb on - strand, within IAI47_20045at 241.381 kb on - strand, within IAI47_20045at 241.381 kb on - strand, within IAI47_20045at 241.381 kb on - strand, within IAI47_20045at 241.479 kb on + strand, within IAI47_20045at 241.480 kb on - strand, within IAI47_20045at 241.509 kb on + strand, within IAI47_20045at 241.510 kb on - strand, within IAI47_20045at 241.528 kb on + strand, within IAI47_20045at 241.529 kb on - strand, within IAI47_20045at 241.555 kb on - strand, within IAI47_20045at 241.555 kb on - strand, within IAI47_20045at 241.561 kb on + strand, within IAI47_20045at 241.561 kb on + strand, within IAI47_20045at 241.562 kb on - strand, within IAI47_20045at 241.562 kb on - strand, within IAI47_20045at 241.609 kb on + strand, within IAI47_20045at 241.610 kb on - strand, within IAI47_20045at 241.735 kb on - strand, within IAI47_20045at 241.735 kb on - strand, within IAI47_20045at 241.735 kb on - strand, within IAI47_20045at 241.752 kb on + strand, within IAI47_20045at 241.806 kb on + strand, within IAI47_20045at 241.827 kb on + strand, within IAI47_20045at 241.929 kb on + strand, within IAI47_20045at 241.929 kb on + strand, within IAI47_20045at 241.929 kb on + strand, within IAI47_20045at 241.929 kb on + strand, within IAI47_20045at 241.929 kb on + strand, within IAI47_20045at 241.930 kb on - strand, within IAI47_20045at 241.930 kb on - strand, within IAI47_20045at 241.993 kb on - strand, within IAI47_20045at 241.993 kb on - strand, within IAI47_20045at 242.087 kb on + strandat 242.087 kb on + strandat 242.088 kb on - strandat 242.088 kb on - strandat 242.166 kb on - strandat 242.213 kb on + strand, within IAI47_20050at 242.372 kb on - strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.453 kb on + strand, within IAI47_20050at 242.454 kb on - strand, within IAI47_20050at 242.454 kb on - strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.456 kb on - strand, within IAI47_20050at 242.456 kb on - strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.570 kb on + strand, within IAI47_20050at 242.570 kb on + strand, within IAI47_20050at 242.571 kb on - strand, within IAI47_20050at 242.571 kb on - strand, within IAI47_20050at 242.588 kb on + strand, within IAI47_20050at 242.589 kb on - strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.621 kb on - strand, within IAI47_20050at 242.621 kb on - strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.680 kb on - strand, within IAI47_20050at 242.680 kb on - strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.685 kb on - strand, within IAI47_20050at 242.685 kb on - strand, within IAI47_20050at 242.904 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.948 kb on + strandat 242.949 kb on - strandat 242.963 kb on - strandat 242.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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240,335 + -2.1
240,336 - -0.2
240,339 - +1.1
240,354 + -1.5
240,357 - -0.5
240,375 + -0.2
240,375 + -1.4
240,375 + -1.6
240,376 - +0.2
240,376 - -0.3
240,376 - -0.3
240,406 + +1.2
240,406 + +0.8
240,406 + +0.2
240,406 + +0.2
240,406 + -0.4
240,407 - +1.9
240,464 + +0.1
240,464 + +0.1
240,465 - +0.6
240,466 + -1.3
240,466 + -0.3
240,466 + -0.3
240,598 + IAI47_20040 0.23 -0.3
240,598 + IAI47_20040 0.23 +1.9
240,598 + IAI47_20040 0.23 +4.2
240,598 + IAI47_20040 0.23 -0.7
240,598 + IAI47_20040 0.23 -0.9
240,599 - IAI47_20040 0.23 -0.8
240,599 - IAI47_20040 0.23 -0.3
240,599 - IAI47_20040 0.23 +0.1
240,678 + IAI47_20040 0.31 -0.4
240,678 + IAI47_20040 0.31 +1.5
240,678 + IAI47_20040 0.31 -0.7
240,678 + IAI47_20040 0.31 -1.2
240,678 + IAI47_20040 0.31 -0.2
240,680 + IAI47_20040 0.32 +0.5
240,680 + IAI47_20040 0.32 -0.0
240,680 + IAI47_20040 0.32 -1.1
240,680 + IAI47_20040 0.32 +1.6
240,680 + IAI47_20040 0.32 -1.1
240,681 - IAI47_20040 0.32 -0.2
240,681 - IAI47_20040 0.32 +2.0
240,681 - IAI47_20040 0.32 +1.1
240,723 - IAI47_20040 0.36 +0.5
240,723 - IAI47_20040 0.36 +3.2
240,731 + IAI47_20040 0.37 +1.4
240,732 - IAI47_20040 0.37 -0.4
240,741 + IAI47_20040 0.38 +0.3
240,741 + IAI47_20040 0.38 +1.4
240,741 + IAI47_20040 0.38 +0.5
240,741 + IAI47_20040 0.38 +0.4
240,747 + IAI47_20040 0.39 -1.4
240,747 + IAI47_20040 0.39 -0.2
240,798 + IAI47_20040 0.44 -0.4
240,798 + IAI47_20040 0.44 +1.7
240,814 + IAI47_20040 0.46 +0.1
240,815 - IAI47_20040 0.46 +1.1
240,815 - IAI47_20040 0.46 -2.1
240,815 - IAI47_20040 0.46 +0.1
240,815 - IAI47_20040 0.46 +1.1
240,815 - IAI47_20040 0.46 +0.5
240,867 + IAI47_20040 0.52 +1.2
240,868 - IAI47_20040 0.52 -0.4
240,868 - IAI47_20040 0.52 +0.4
240,882 - IAI47_20040 0.53 -1.5
240,920 - IAI47_20040 0.57 +0.6
240,920 - IAI47_20040 0.57 +0.5
240,998 + IAI47_20040 0.66 +0.3
240,998 + IAI47_20040 0.66 +2.1
240,999 - IAI47_20040 0.66 -0.1
240,999 - IAI47_20040 0.66 -2.1
241,014 - IAI47_20040 0.68 -1.7
241,053 + IAI47_20040 0.72 +0.6
241,053 + IAI47_20040 0.72 -0.1
241,053 + IAI47_20040 0.72 -1.7
241,054 - IAI47_20040 0.72 +0.5
241,054 - IAI47_20040 0.72 -0.2
241,080 + IAI47_20040 0.75 +1.0
241,080 + IAI47_20040 0.75 +1.1
241,081 - IAI47_20040 0.75 -0.6
241,081 - IAI47_20040 0.75 +0.4
241,098 + IAI47_20040 0.77 -0.7
241,098 + IAI47_20040 0.77 +1.2
241,099 - IAI47_20040 0.77 -1.4
241,099 - IAI47_20040 0.77 +0.7
241,099 - IAI47_20040 0.77 +0.5
241,106 + IAI47_20040 0.78 +0.7
241,106 + IAI47_20040 0.78 +0.3
241,107 - IAI47_20040 0.78 +3.1
241,107 - IAI47_20040 0.78 +2.1
241,107 - IAI47_20040 0.78 -1.1
241,149 + IAI47_20040 0.82 +0.6
241,157 + IAI47_20040 0.83 +2.6
241,157 + IAI47_20040 0.83 +3.1
241,158 - IAI47_20040 0.83 +0.6
241,158 - IAI47_20040 0.83 +0.8
241,158 - IAI47_20040 0.83 +2.0
241,160 + IAI47_20040 0.83 +0.3
241,160 + IAI47_20040 0.83 +0.8
241,161 - IAI47_20040 0.83 -1.1
241,168 + IAI47_20040 0.84 -0.1
241,168 + IAI47_20040 0.84 -1.3
241,168 + IAI47_20040 0.84 +0.3
241,168 + IAI47_20040 0.84 +0.0
241,169 - IAI47_20040 0.84 -0.7
241,169 - IAI47_20040 0.84 +0.1
241,185 + IAI47_20040 0.86 -0.9
241,185 + IAI47_20040 0.86 -0.8
241,186 - IAI47_20040 0.86 -1.2
241,186 - IAI47_20040 0.86 -0.4
241,188 - IAI47_20040 0.86 -1.6
241,188 - IAI47_20040 0.86 +0.6
241,316 - +4.8
241,347 + +0.4
241,347 + -0.4
241,348 - +0.8
241,348 - -0.4
241,348 - +1.3
241,362 + -1.5
241,363 - +0.1
241,375 - +0.9
241,380 + IAI47_20045 0.10 +2.1
241,380 + IAI47_20045 0.10 +0.6
241,380 + IAI47_20045 0.10 -0.2
241,381 - IAI47_20045 0.11 -0.8
241,381 - IAI47_20045 0.11 -0.9
241,381 - IAI47_20045 0.11 -0.4
241,381 - IAI47_20045 0.11 +0.0
241,479 + IAI47_20045 0.23 -0.3
241,480 - IAI47_20045 0.23 -0.5
241,509 + IAI47_20045 0.27 -0.1
241,510 - IAI47_20045 0.27 +1.9
241,528 + IAI47_20045 0.29 +2.1
241,529 - IAI47_20045 0.29 -0.6
241,555 - IAI47_20045 0.32 +0.4
241,555 - IAI47_20045 0.32 +1.3
241,561 + IAI47_20045 0.33 +0.3
241,561 + IAI47_20045 0.33 +0.6
241,562 - IAI47_20045 0.33 +2.6
241,562 - IAI47_20045 0.33 +3.6
241,609 + IAI47_20045 0.39 -1.1
241,610 - IAI47_20045 0.39 +0.1
241,735 - IAI47_20045 0.55 -1.4
241,735 - IAI47_20045 0.55 +0.1
241,735 - IAI47_20045 0.55 -1.9
241,752 + IAI47_20045 0.57 +0.1
241,806 + IAI47_20045 0.64 -1.6
241,827 + IAI47_20045 0.67 -0.9
241,929 + IAI47_20045 0.79 -0.1
241,929 + IAI47_20045 0.79 +1.1
241,929 + IAI47_20045 0.79 -0.6
241,929 + IAI47_20045 0.79 -0.6
241,929 + IAI47_20045 0.79 -0.4
241,930 - IAI47_20045 0.80 -1.3
241,930 - IAI47_20045 0.80 -0.6
241,993 - IAI47_20045 0.88 +1.7
241,993 - IAI47_20045 0.88 -0.0
242,087 + +1.8
242,087 + -0.4
242,088 - -0.4
242,088 - -0.1
242,166 - +0.2
242,213 + IAI47_20050 0.14 -2.0
242,372 - IAI47_20050 0.32 +1.6
242,433 + IAI47_20050 0.38 +0.5
242,433 + IAI47_20050 0.38 +0.4
242,433 + IAI47_20050 0.38 -0.4
242,453 + IAI47_20050 0.41 +0.5
242,454 - IAI47_20050 0.41 -2.0
242,454 - IAI47_20050 0.41 +1.4
242,455 + IAI47_20050 0.41 +1.3
242,455 + IAI47_20050 0.41 +0.6
242,455 + IAI47_20050 0.41 +0.8
242,456 - IAI47_20050 0.41 -0.8
242,456 - IAI47_20050 0.41 +2.9
242,555 + IAI47_20050 0.52 -1.4
242,555 + IAI47_20050 0.52 +0.6
242,555 + IAI47_20050 0.52 -0.7
242,555 + IAI47_20050 0.52 -0.3
242,556 - IAI47_20050 0.52 -0.6
242,556 - IAI47_20050 0.52 -1.2
242,556 - IAI47_20050 0.52 +0.4
242,570 + IAI47_20050 0.54 -1.1
242,570 + IAI47_20050 0.54 -0.4
242,571 - IAI47_20050 0.54 -0.4
242,571 - IAI47_20050 0.54 +1.0
242,588 + IAI47_20050 0.56 +0.2
242,589 - IAI47_20050 0.56 -1.1
242,620 + IAI47_20050 0.59 +2.1
242,620 + IAI47_20050 0.59 -0.5
242,620 + IAI47_20050 0.59 -1.5
242,621 - IAI47_20050 0.59 +0.1
242,621 - IAI47_20050 0.59 +0.1
242,679 + IAI47_20050 0.66 -0.8
242,679 + IAI47_20050 0.66 -0.7
242,679 + IAI47_20050 0.66 +0.1
242,680 - IAI47_20050 0.66 +2.6
242,680 - IAI47_20050 0.66 -0.4
242,684 + IAI47_20050 0.66 -1.0
242,684 + IAI47_20050 0.66 +1.4
242,684 + IAI47_20050 0.66 -1.4
242,685 - IAI47_20050 0.66 +0.4
242,685 - IAI47_20050 0.66 -0.0
242,904 + -0.3
242,945 + +0.6
242,945 + +0.1
242,945 + +0.5
242,945 + +0.6
242,945 + +0.6
242,945 + -1.4
242,946 - +0.6
242,946 - -0.7
242,946 - -0.7
242,946 - +0.1
242,948 + -1.8
242,949 - -1.4
242,963 - +1.0
242,983 - +0.4

Or see this region's nucleotide sequence