Strain Fitness in Pantoea sp. MT58 around IAI47_18875

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
7,216	-		IAI47_18870	0.56	-2.0
7,223	+		IAI47_18870	0.57	-0.3
7,223	+		IAI47_18870	0.57	+1.8
7,223	+		IAI47_18870	0.57	+1.1
7,224	-		IAI47_18870	0.57	+0.4
7,249	-		IAI47_18870	0.59	+0.6
7,249	-		IAI47_18870	0.59	-0.4
7,270	+		IAI47_18870	0.60	+0.2
7,270	+		IAI47_18870	0.60	+0.3
7,271	-		IAI47_18870	0.60	-1.3
7,271	-		IAI47_18870	0.60	-0.1
7,271	-		IAI47_18870	0.60	-0.7
7,271	-		IAI47_18870	0.60	-2.0
7,271	-		IAI47_18870	0.60	-0.3
7,273	+		IAI47_18870	0.60	+1.0
7,273	+		IAI47_18870	0.60	-0.5
7,273	+		IAI47_18870	0.60	-2.0
7,273	+		IAI47_18870	0.60	+0.2
7,274	-		IAI47_18870	0.60	-2.8
7,274	-		IAI47_18870	0.60	+0.8
7,274	-		IAI47_18870	0.60	-0.4
7,274	-		IAI47_18870	0.60	-0.1
7,338	+		IAI47_18870	0.65	+0.7
7,339	-		IAI47_18870	0.65	-0.1
7,387	-		IAI47_18870	0.68	+0.3
7,387	-		IAI47_18870	0.68	+1.2
7,424	+		IAI47_18870	0.71	-0.2
7,424	+		IAI47_18870	0.71	+0.3
7,424	+		IAI47_18870	0.71	+0.5
7,473	+		IAI47_18870	0.74	+1.1
7,473	+		IAI47_18870	0.74	-0.1
7,473	+		IAI47_18870	0.74	+0.1
7,474	-		IAI47_18870	0.74	-1.5
7,474	-		IAI47_18870	0.74	+0.1
7,498	+		IAI47_18870	0.76	+0.4
7,499	-		IAI47_18870	0.76	-0.1
7,536	+		IAI47_18870	0.78	-2.1
7,537	-		IAI47_18870	0.79	-1.7
7,537	-		IAI47_18870	0.79	-0.9
7,561	+		IAI47_18870	0.80	+0.7
7,561	+		IAI47_18870	0.80	-0.8
7,607	+		IAI47_18870	0.83	+2.9
7,607	+		IAI47_18870	0.83	-0.1
7,610	+		IAI47_18870	0.84	-0.3
7,610	+		IAI47_18870	0.84	-0.5
7,631	+		IAI47_18870	0.85	+3.3
7,631	+		IAI47_18870	0.85	-1.2
7,632	-		IAI47_18870	0.85	+1.3
7,640	+		IAI47_18870	0.86	-0.2
7,640	+		IAI47_18870	0.86	-0.8
7,640	+		IAI47_18870	0.86	+0.5
7,640	+		IAI47_18870	0.86	+0.4
7,640	+		IAI47_18870	0.86	-0.3
7,641	-		IAI47_18870	0.86	-0.7
7,644	+		IAI47_18870	0.86	+0.3
7,644	+		IAI47_18870	0.86	+1.9
7,644	+		IAI47_18870	0.86	+0.1
7,644	+		IAI47_18870	0.86	+1.4
7,644	+		IAI47_18870	0.86	+0.1
7,645	-		IAI47_18870	0.86	-1.3
7,645	-		IAI47_18870	0.86	+1.3
7,645	-		IAI47_18870	0.86	+2.3
7,645	-		IAI47_18870	0.86	+1.4
7,645	-		IAI47_18870	0.86	-2.5
7,645	-		IAI47_18870	0.86	+0.7
7,645	-		IAI47_18870	0.86	-1.7
7,645	-		IAI47_18870	0.86	-0.6
7,677	+		IAI47_18870	0.88	-0.0
7,684	+		IAI47_18870	0.89	+1.6
7,684	+		IAI47_18870	0.89	-1.3
7,684	+		IAI47_18870	0.89	-0.5
7,684	+		IAI47_18870	0.89	-1.0
7,685	-		IAI47_18870	0.89	+0.5
7,707	+				+0.9
7,722	+				-0.1
7,723	-				-0.1
7,723	-				-1.9
7,736	+				+0.1
7,844	+				-0.3
7,844	+				-0.1
7,845	-				-1.7
7,846	+				-0.9
7,846	+				+0.4
7,846	+				+0.7
7,847	-				-1.4
7,847	-				-0.8
7,887	+				-0.5
7,895	+				-0.5
7,961	+				+0.8
7,962	-				+1.7
7,962	-				-0.2
7,962	-				+0.2
7,972	+				-1.8
7,983	-				-0.3
8,047	+				+2.5
8,048	-				+0.2
8,070	+				-0.7
8,070	+				-0.2
8,070	+				-0.3
8,071	-				+0.2
8,075	+				-0.0
8,075	+				+0.1
8,076	-				+1.3
8,076	-				-0.3
8,076	-				-1.9
8,076	-				+0.4
8,076	-				+0.8
8,076	-				-1.4
8,076	-				-1.5
8,084	+				+1.3
8,084	+				+1.1
8,115	-				+1.8
8,115	-				+2.2
8,117	-				-0.9
8,147	+				+0.3
8,147	+				+1.7
8,147	+				+1.4
8,147	+				-0.9
8,147	+				+0.2
8,147	+				+0.9
8,147	+				-0.4
8,148	-				-0.1
8,148	-				-0.1
8,148	-				+0.2
8,148	-				+1.5
8,148	-				-0.8
8,176	+				-0.5
8,176	+				+0.3
8,176	+				-2.0
8,176	+				-1.0
8,176	+				+3.3
8,176	+				-2.0
8,177	-				-1.1
8,177	-				-0.2
8,177	-				-1.2
8,201	-				+1.1
8,241	+				+1.0
8,241	+				-0.9
8,244	+				-0.8
8,244	+				-1.1
8,244	+				-1.3
8,245	-				+2.2
8,245	-				+2.7
8,250	+				+1.1
8,251	-				-0.0
8,251	-				-2.4
8,270	+				+0.8
8,270	+				-2.0
8,271	-				+1.0
8,271	-				+1.1
8,295	+				-1.0
8,357	+		IAI47_18875	0.12	-0.3
8,357	+		IAI47_18875	0.12	+0.4
8,357	+		IAI47_18875	0.12	+0.1
8,357	+		IAI47_18875	0.12	+0.6
8,357	+		IAI47_18875	0.12	-0.1
8,358	-		IAI47_18875	0.12	+0.5
8,358	-		IAI47_18875	0.12	-0.0
8,358	-		IAI47_18875	0.12	+2.0
8,358	-		IAI47_18875	0.12	+1.1
8,358	-		IAI47_18875	0.12	+0.3
8,358	-		IAI47_18875	0.12	+1.3
8,366	+		IAI47_18875	0.13	-1.4
8,367	-		IAI47_18875	0.13	-0.8
8,367	-		IAI47_18875	0.13	-0.8
8,393	-		IAI47_18875	0.14	-1.0
8,449	+		IAI47_18875	0.18	-0.1
8,456	+		IAI47_18875	0.19	+0.2
8,457	-		IAI47_18875	0.19	+0.8
8,457	-		IAI47_18875	0.19	-1.1
8,459	+		IAI47_18875	0.19	+0.6
8,460	-		IAI47_18875	0.19	-0.4
8,477	+		IAI47_18875	0.20	+2.9
8,477	+		IAI47_18875	0.20	+0.1
8,477	+		IAI47_18875	0.20	+0.7
8,477	+		IAI47_18875	0.20	+0.2
8,478	-		IAI47_18875	0.20	+0.8
8,478	-		IAI47_18875	0.20	-0.4
8,478	-		IAI47_18875	0.20	+1.7
8,478	-		IAI47_18875	0.20	+0.9
8,513	+		IAI47_18875	0.22	-0.2
8,514	-		IAI47_18875	0.22	+0.3
8,514	-		IAI47_18875	0.22	-1.1
8,514	-		IAI47_18875	0.22	-0.1
8,514	-		IAI47_18875	0.22	-0.9
8,514	-		IAI47_18875	0.22	-1.0
8,514	-		IAI47_18875	0.22	-1.7
8,515	+		IAI47_18875	0.23	-0.9
8,559	+		IAI47_18875	0.25	-0.9
8,560	-		IAI47_18875	0.26	+0.4
8,560	-		IAI47_18875	0.26	+0.5
8,560	-		IAI47_18875	0.26	+1.3
8,582	+		IAI47_18875	0.27	-1.0
8,582	+		IAI47_18875	0.27	-0.2
8,582	+		IAI47_18875	0.27	+0.1
8,582	+		IAI47_18875	0.27	+0.4
8,582	+		IAI47_18875	0.27	-0.6
8,583	-		IAI47_18875	0.27	-0.1
8,583	-		IAI47_18875	0.27	-1.7
8,585	-		IAI47_18875	0.27	-1.3
8,585	-		IAI47_18875	0.27	-0.1
8,590	-		IAI47_18875	0.28	+1.2
8,625	-		IAI47_18875	0.30	-0.3
8,641	-		IAI47_18875	0.31	-2.0
8,659	+		IAI47_18875	0.32	-0.6
8,659	+		IAI47_18875	0.32	-1.4
8,685	+		IAI47_18875	0.34	+1.3
8,685	+		IAI47_18875	0.34	-0.3
8,686	-		IAI47_18875	0.34	+1.0
8,859	+		IAI47_18875	0.45	-0.8
8,859	+		IAI47_18875	0.45	+1.4
8,859	+		IAI47_18875	0.45	+0.6
8,860	-		IAI47_18875	0.46	-0.9
8,860	-		IAI47_18875	0.46	+0.3
8,860	-		IAI47_18875	0.46	+0.5
8,860	-		IAI47_18875	0.46	-0.7
8,860	-		IAI47_18875	0.46	+0.1
8,860	-		IAI47_18875	0.46	+0.5
8,860	-		IAI47_18875	0.46	-0.2
8,860	-		IAI47_18875	0.46	-2.4
8,866	-		IAI47_18875	0.46	-1.5
8,883	+		IAI47_18875	0.47	-0.7
8,928	+		IAI47_18875	0.50	-1.2
8,986	+		IAI47_18875	0.54	-0.9
8,987	-		IAI47_18875	0.54	+0.7
8,987	-		IAI47_18875	0.54	+0.5
8,987	-		IAI47_18875	0.54	+1.0
8,990	+		IAI47_18875	0.54	-1.8
8,990	+		IAI47_18875	0.54	+0.3
8,991	-		IAI47_18875	0.54	+0.8
8,991	-		IAI47_18875	0.54	-0.6
8,991	-		IAI47_18875	0.54	+1.8
8,991	-		IAI47_18875	0.54	+0.5
8,992	+		IAI47_18875	0.54	+1.1
8,993	-		IAI47_18875	0.54	+1.8
8,993	-		IAI47_18875	0.54	-1.5
9,026	+		IAI47_18875	0.57	-0.7
9,027	-		IAI47_18875	0.57	-0.0
9,027	-		IAI47_18875	0.57	+5.0
9,076	+		IAI47_18875	0.60	-0.1
9,077	-		IAI47_18875	0.60	+0.6
9,130	+		IAI47_18875	0.64	-0.1
9,131	-		IAI47_18875	0.64	-0.5
9,131	-		IAI47_18875	0.64	+0.7
9,131	-		IAI47_18875	0.64	-1.6
9,131	-		IAI47_18875	0.64	+0.7
9,164	+		IAI47_18875	0.66	+1.1
9,164	+		IAI47_18875	0.66	-1.1
9,201	+		IAI47_18875	0.68	+1.3
9,202	-		IAI47_18875	0.68	-0.8
9,202	-		IAI47_18875	0.68	+0.1
9,237	+		IAI47_18875	0.71	-0.8
9,254	+		IAI47_18875	0.72	+1.3
9,255	-		IAI47_18875	0.72	+0.7
9,297	-		IAI47_18875	0.75	+1.2
9,310	+		IAI47_18875	0.76	+1.0
9,317	-		IAI47_18875	0.76	+0.4
9,317	-		IAI47_18875	0.76	-1.6
9,317	-		IAI47_18875	0.76	-4.0
9,317	-		IAI47_18875	0.76	-1.1
9,385	+		IAI47_18875	0.81	+1.3
9,385	+		IAI47_18875	0.81	-0.4
9,385	+		IAI47_18875	0.81	-1.2
9,386	-		IAI47_18875	0.81	-0.7
9,465	+		IAI47_18875	0.86	-0.0
9,465	+		IAI47_18875	0.86	-0.4
9,466	-		IAI47_18875	0.86	+2.5
9,466	-		IAI47_18875	0.86	+0.7
9,466	-		IAI47_18875	0.86	+0.5
9,466	-		IAI47_18875	0.86	+0.3
9,466	-		IAI47_18875	0.86	-0.4
9,466	-		IAI47_18875	0.86	+0.4
9,466	-		IAI47_18875	0.86	-0.2
9,466	-		IAI47_18875	0.86	+0.7
9,466	-		IAI47_18875	0.86	-1.2
9,467	+		IAI47_18875	0.86	-0.8
9,468	-		IAI47_18875	0.86	+0.3
9,468	-		IAI47_18875	0.86	-0.5
9,468	-		IAI47_18875	0.86	+0.3
9,468	-		IAI47_18875	0.86	+0.9
9,484	+		IAI47_18875	0.87	+1.4
9,485	-		IAI47_18875	0.87	+1.3
9,502	+		IAI47_18875	0.88	-0.1
9,526	-		IAI47_18875	0.90	-1.0
9,578	-				-0.3
9,578	-				+0.8
9,593	+				-2.0
9,594	-				-0.9
9,599	+				+1.4
9,599	+				-0.0
9,599	+				+0.7
9,599	+				-1.0
9,599	+				+0.6
9,599	+				-1.3
9,600	-				-0.3
9,600	-				-0.6
9,717	+				+1.7
9,717	+				-0.3
9,717	+				-1.1
9,717	+				-0.0
9,717	+				+0.4
9,717	+				-0.3
9,717	+				+1.5
9,717	+				+0.9
9,718	-				+1.4
9,718	-				-0.9
9,718	-				-0.1
9,806	-		IAI47_18880	0.11	+0.3
9,806	-		IAI47_18880	0.11	+0.6
9,823	+		IAI47_18880	0.13	-0.8
9,824	-		IAI47_18880	0.13	+0.9
9,824	-		IAI47_18880	0.13	-2.0
9,898	+		IAI47_18880	0.21	-0.1
9,898	+		IAI47_18880	0.21	-0.9
9,951	+		IAI47_18880	0.27	-0.4
9,951	+		IAI47_18880	0.27	+0.5
9,952	-		IAI47_18880	0.28	+1.3
9,952	-		IAI47_18880	0.28	-0.4
9,952	-		IAI47_18880	0.28	+1.5
10,012	+		IAI47_18880	0.35	+0.2
10,014	+		IAI47_18880	0.35	-0.1
10,014	+		IAI47_18880	0.35	+0.3
10,014	+		IAI47_18880	0.35	-1.0
10,014	+		IAI47_18880	0.35	+1.6
10,014	+		IAI47_18880	0.35	+3.9
10,014	+		IAI47_18880	0.35	+1.3
10,014	+		IAI47_18880	0.35	-1.0
10,015	-		IAI47_18880	0.35	+1.8
10,015	-		IAI47_18880	0.35	+0.3
10,015	-		IAI47_18880	0.35	-2.0
10,015	-		IAI47_18880	0.35	-0.2
10,015	-		IAI47_18880	0.35	-1.4
10,015	-		IAI47_18880	0.35	+0.6
10,015	-		IAI47_18880	0.35	+2.0
10,015	-		IAI47_18880	0.35	-1.7
10,015	-		IAI47_18880	0.35	-0.9
10,015	-		IAI47_18880	0.35	+4.5
10,018	+		IAI47_18880	0.35	-1.1
10,018	+		IAI47_18880	0.35	-1.3
10,018	+		IAI47_18880	0.35	-1.0
10,018	+		IAI47_18880	0.35	+1.2
10,018	+		IAI47_18880	0.35	-1.5
10,019	-		IAI47_18880	0.35	-1.0
10,019	-		IAI47_18880	0.35	-0.5
10,019	-		IAI47_18880	0.35	-0.6
10,019	-		IAI47_18880	0.35	+0.5
10,019	-		IAI47_18880	0.35	-0.0
10,019	-		IAI47_18880	0.35	+2.3
10,019	-		IAI47_18880	0.35	+1.4
10,118	+		IAI47_18880	0.47	+0.9
10,162	+		IAI47_18880	0.52	+1.0
10,162	+		IAI47_18880	0.52	-0.7
10,162	+		IAI47_18880	0.52	-0.1
10,183	+		IAI47_18880	0.55	+2.0
10,184	-		IAI47_18880	0.55	+0.2
10,184	-		IAI47_18880	0.55	+0.1
10,184	-		IAI47_18880	0.55	+0.7
10,234	+		IAI47_18880	0.61	+0.9
10,234	+		IAI47_18880	0.61	-1.7
10,311	-		IAI47_18880	0.70	-0.7
10,347	+		IAI47_18880	0.74	+0.3
10,348	-		IAI47_18880	0.74	-0.3
10,348	-		IAI47_18880	0.74	-0.8
10,364	+		IAI47_18880	0.76	+1.3
10,390	-		IAI47_18880	0.79	+0.7
10,408	+		IAI47_18880	0.81	+0.3
10,409	-		IAI47_18880	0.81	+0.4
10,448	+		IAI47_18880	0.86	+0.9
10,449	-		IAI47_18880	0.86	+1.4
10,449	-		IAI47_18880	0.86	-1.1
10,449	-		IAI47_18880	0.86	-0.2
10,449	-		IAI47_18880	0.86	+2.3
10,449	-		IAI47_18880	0.86	-1.5
10,497	-				+0.1
10,497	-				-2.1
10,513	-				+0.6
10,548	+				-0.6
10,548	+				+2.0
10,548	+				+3.7
10,549	-				+0.8
10,560	+				+2.5
10,561	+				-1.1
10,561	+				-0.7
10,562	-				+1.0
10,592	-				+1.1
10,592	-				+0.4
10,592	-				-0.2
10,602	+				+0.6
10,603	-				+1.5
10,613	+				-0.4
10,613	+				-0.3
10,626	-				-0.6
10,651	-				-0.3
10,651	-				+2.1