Strain Fitness in Pantoea sp. MT58 around IAI47_18870

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
5,424	+				+0.2
5,438	+				-2.4
5,438	+				-1.1
5,438	+				+0.5
5,438	+				+0.7
5,439	-				-2.8
5,439	-				-0.3
5,439	-				-1.5
5,439	-				+1.1
5,439	-				+0.1
5,467	-				+1.1
5,472	+				+0.1
5,473	-				-0.9
5,486	+				-1.0
5,486	+				-0.3
5,547	+				+0.0
5,547	+				-1.4
5,548	-				-0.9
5,548	-				+0.5
5,548	-				-0.7
5,548	-				-1.9
5,556	+				-0.7
5,556	+				-1.5
5,557	-				+1.4
5,557	-				-0.5
5,557	-				-0.1
5,557	-				-1.7
5,561	+				+0.1
5,561	+				-1.0
5,561	+				+0.6
5,562	-				-0.5
5,579	+				+1.1
5,579	+				-2.3
5,580	-				+0.2
5,586	+				+1.8
5,586	+				+0.3
5,587	-				-1.2
5,600	+				-0.1
5,601	-				+1.4
5,601	-				-0.9
5,601	-				+0.4
5,601	-				+1.1
5,622	+				+2.7
5,624	+				+0.8
5,625	-				+0.2
5,639	+				-1.9
5,639	+				-0.1
5,639	+				-1.7
5,672	+				-0.2
5,672	+				-0.3
5,672	+				+2.0
5,673	-				+0.7
5,673	-				-1.9
5,673	-				-0.5
5,673	-				-0.3
5,673	-				+0.5
5,673	-				+0.6
5,685	+				+0.8
5,686	-				+0.0
5,686	-				+1.7
5,753	+				+1.4
5,753	+				-1.1
5,792	+				+2.1
5,805	+				+1.9
5,806	-				+0.7
5,806	-				+0.3
5,813	-				-0.8
5,813	-				-0.0
5,843	+				-1.6
5,875	+				-1.9
5,875	+				+1.6
5,875	+				-1.1
5,875	+				-0.5
5,875	+				-1.4
5,875	+				-0.0
5,875	+				-1.1
5,876	-				-0.4
5,876	-				+0.1
5,876	-				+1.8
5,876	-				+0.4
5,876	-				-0.3
5,878	-				-0.0
5,888	+				-1.0
5,888	+				+0.2
5,888	+				-1.8
5,888	+				-2.4
5,888	+				-2.7
5,889	-				+0.7
5,889	-				-2.7
5,889	-				-0.6
5,894	+				+0.6
5,894	+				+1.8
5,894	+				+1.1
5,894	+				+0.4
5,894	+				+1.3
5,895	-				+0.5
5,895	-				+1.4
5,931	-				+1.2
5,931	-				+0.7
5,949	+				-1.1
5,949	+				-0.8
5,949	+				-1.0
5,989	+				-0.0
5,990	-				+0.2
6,009	-				+0.7
6,043	-				+0.6
6,117	+				+0.2
6,117	+				+1.1
6,118	-				-2.5
6,118	-				-0.4
6,139	+				+1.5
6,140	-				-0.8
6,182	+				-0.8
6,182	+				+2.1
6,182	+				+0.5
6,229	-				-0.1
6,246	+				+0.2
6,246	+				-0.8
6,246	+				+0.4
6,247	-				+2.1
6,247	-				+0.6
6,251	-				-1.1
6,251	-				+0.2
6,254	+				-0.6
6,254	+				-1.4
6,255	-				+1.3
6,255	-				+1.3
6,273	+				+0.2
6,274	-				+1.1
6,279	+				+0.3
6,280	-				+0.7
6,280	-				+0.3
6,285	+				+0.3
6,296	+				-1.0
6,304	-				-0.9
6,325	-				+1.6
6,329	-				-1.0
6,373	+				-1.0
6,378	+				-0.1
6,378	+				-1.3
6,378	+				-0.0
6,379	-				-2.0
6,379	-				+1.6
6,379	-				-1.6
6,381	+				+2.7
6,381	+				-0.5
6,382	-				-0.1
6,393	+				+0.7
6,394	-				-1.0
6,394	-				+0.3
6,394	-				+0.6
6,396	+				-1.1
6,396	+				-0.2
6,396	+				+0.4
6,397	-				+0.7
6,402	+				+0.9
6,402	+				+2.1
6,402	+				-0.4
6,403	-				-0.1
6,408	+				+1.4
6,456	-				-1.6
6,492	+				-0.5
6,493	-				-0.9
6,514	+				+0.3
6,514	+				+0.3
6,515	-				-0.8
6,515	-				-2.4
6,542	+				+0.4
6,543	-		IAI47_18870	0.10	-1.6
6,543	-		IAI47_18870	0.10	+0.9
6,547	+		IAI47_18870	0.10	+0.9
6,547	+		IAI47_18870	0.10	-0.9
6,547	+		IAI47_18870	0.10	+0.8
6,547	+		IAI47_18870	0.10	+1.9
6,547	+		IAI47_18870	0.10	-1.1
6,547	+		IAI47_18870	0.10	+1.7
6,547	+		IAI47_18870	0.10	-0.9
6,547	+		IAI47_18870	0.10	+0.8
6,548	-		IAI47_18870	0.10	-0.5
6,548	-		IAI47_18870	0.10	+0.9
6,548	-		IAI47_18870	0.10	-1.0
6,548	-		IAI47_18870	0.10	-0.0
6,548	-		IAI47_18870	0.10	-0.2
6,548	-		IAI47_18870	0.10	+0.0
6,548	-		IAI47_18870	0.10	+0.9
6,549	+		IAI47_18870	0.10	+1.1
6,549	+		IAI47_18870	0.10	+1.4
6,549	+		IAI47_18870	0.10	+1.4
6,550	-		IAI47_18870	0.11	-0.1
6,550	-		IAI47_18870	0.11	+0.9
6,550	-		IAI47_18870	0.11	+0.0
6,550	-		IAI47_18870	0.11	+0.1
6,608	+		IAI47_18870	0.15	-0.6
6,609	-		IAI47_18870	0.15	-2.5
6,684	+		IAI47_18870	0.20	-1.2
6,685	-		IAI47_18870	0.20	+1.2
6,687	+		IAI47_18870	0.20	-1.5
6,688	-		IAI47_18870	0.20	-0.1
6,693	-		IAI47_18870	0.20	+0.3
6,756	+		IAI47_18870	0.25	-0.7
6,756	+		IAI47_18870	0.25	-0.3
6,756	+		IAI47_18870	0.25	-0.7
6,757	-		IAI47_18870	0.25	+1.6
6,757	-		IAI47_18870	0.25	-0.2
6,757	-		IAI47_18870	0.25	-1.8
6,757	-		IAI47_18870	0.25	+1.6
6,759	+		IAI47_18870	0.25	+3.1
6,759	+		IAI47_18870	0.25	+0.3
6,759	+		IAI47_18870	0.25	+1.3
6,759	+		IAI47_18870	0.25	+1.7
6,760	-		IAI47_18870	0.25	+0.1
6,760	-		IAI47_18870	0.25	-2.2
6,760	-		IAI47_18870	0.25	-1.5
6,760	-		IAI47_18870	0.25	+0.2
6,760	-		IAI47_18870	0.25	-0.3
6,760	-		IAI47_18870	0.25	+0.6
6,825	+		IAI47_18870	0.29	+1.3
6,867	-		IAI47_18870	0.32	-1.0
6,903	+		IAI47_18870	0.35	-0.4
6,903	+		IAI47_18870	0.35	+0.0
6,903	+		IAI47_18870	0.35	+0.6
6,903	+		IAI47_18870	0.35	-1.1
6,904	-		IAI47_18870	0.35	-1.9
6,904	-		IAI47_18870	0.35	-0.8
6,904	-		IAI47_18870	0.35	-0.5
6,904	-		IAI47_18870	0.35	+2.1
6,910	+		IAI47_18870	0.35	-0.7
6,910	+		IAI47_18870	0.35	-0.7
6,911	-		IAI47_18870	0.35	-1.4
6,922	-		IAI47_18870	0.36	+0.6
6,934	+		IAI47_18870	0.37	+2.4
6,964	+		IAI47_18870	0.39	+2.1
6,964	+		IAI47_18870	0.39	+0.4
6,964	+		IAI47_18870	0.39	+0.8
6,964	+		IAI47_18870	0.39	-1.9
6,965	-		IAI47_18870	0.39	-1.4
6,965	-		IAI47_18870	0.39	-1.1
6,965	-		IAI47_18870	0.39	-1.5
6,965	-		IAI47_18870	0.39	-1.8
7,061	+		IAI47_18870	0.46	+1.7
7,087	+		IAI47_18870	0.48	-1.7
7,087	+		IAI47_18870	0.48	-0.2
7,216	-		IAI47_18870	0.56	-2.0
7,223	+		IAI47_18870	0.57	-0.3
7,223	+		IAI47_18870	0.57	+1.8
7,223	+		IAI47_18870	0.57	+1.1
7,224	-		IAI47_18870	0.57	+0.4
7,249	-		IAI47_18870	0.59	+0.6
7,249	-		IAI47_18870	0.59	-0.4
7,270	+		IAI47_18870	0.60	+0.2
7,270	+		IAI47_18870	0.60	+0.3
7,271	-		IAI47_18870	0.60	-1.3
7,271	-		IAI47_18870	0.60	-0.1
7,271	-		IAI47_18870	0.60	-0.7
7,271	-		IAI47_18870	0.60	-2.0
7,271	-		IAI47_18870	0.60	-0.3
7,273	+		IAI47_18870	0.60	+1.0
7,273	+		IAI47_18870	0.60	-0.5
7,273	+		IAI47_18870	0.60	-2.0
7,273	+		IAI47_18870	0.60	+0.2
7,274	-		IAI47_18870	0.60	-2.8
7,274	-		IAI47_18870	0.60	+0.8
7,274	-		IAI47_18870	0.60	-0.4
7,274	-		IAI47_18870	0.60	-0.1
7,338	+		IAI47_18870	0.65	+0.7
7,339	-		IAI47_18870	0.65	-0.1
7,387	-		IAI47_18870	0.68	+0.3
7,387	-		IAI47_18870	0.68	+1.2
7,424	+		IAI47_18870	0.71	-0.2
7,424	+		IAI47_18870	0.71	+0.3
7,424	+		IAI47_18870	0.71	+0.5
7,473	+		IAI47_18870	0.74	+1.1
7,473	+		IAI47_18870	0.74	-0.1
7,473	+		IAI47_18870	0.74	+0.1
7,474	-		IAI47_18870	0.74	-1.5
7,474	-		IAI47_18870	0.74	+0.1
7,498	+		IAI47_18870	0.76	+0.4
7,499	-		IAI47_18870	0.76	-0.1
7,536	+		IAI47_18870	0.78	-2.1
7,537	-		IAI47_18870	0.79	-1.7
7,537	-		IAI47_18870	0.79	-0.9
7,561	+		IAI47_18870	0.80	+0.7
7,561	+		IAI47_18870	0.80	-0.8
7,607	+		IAI47_18870	0.83	+2.9
7,607	+		IAI47_18870	0.83	-0.1
7,610	+		IAI47_18870	0.84	-0.3
7,610	+		IAI47_18870	0.84	-0.5
7,631	+		IAI47_18870	0.85	+3.3
7,631	+		IAI47_18870	0.85	-1.2
7,632	-		IAI47_18870	0.85	+1.3
7,640	+		IAI47_18870	0.86	-0.2
7,640	+		IAI47_18870	0.86	-0.8
7,640	+		IAI47_18870	0.86	+0.5
7,640	+		IAI47_18870	0.86	+0.4
7,640	+		IAI47_18870	0.86	-0.3
7,641	-		IAI47_18870	0.86	-0.7
7,644	+		IAI47_18870	0.86	+0.3
7,644	+		IAI47_18870	0.86	+1.9
7,644	+		IAI47_18870	0.86	+0.1
7,644	+		IAI47_18870	0.86	+1.4
7,644	+		IAI47_18870	0.86	+0.1
7,645	-		IAI47_18870	0.86	-1.3
7,645	-		IAI47_18870	0.86	+1.3
7,645	-		IAI47_18870	0.86	+2.3
7,645	-		IAI47_18870	0.86	+1.4
7,645	-		IAI47_18870	0.86	-2.5
7,645	-		IAI47_18870	0.86	+0.7
7,645	-		IAI47_18870	0.86	-1.7
7,645	-		IAI47_18870	0.86	-0.6
7,677	+		IAI47_18870	0.88	-0.0
7,684	+		IAI47_18870	0.89	+1.6
7,684	+		IAI47_18870	0.89	-1.3
7,684	+		IAI47_18870	0.89	-0.5
7,684	+		IAI47_18870	0.89	-1.0
7,685	-		IAI47_18870	0.89	+0.5
7,707	+				+0.9
7,722	+				-0.1
7,723	-				-0.1
7,723	-				-1.9
7,736	+				+0.1
7,844	+				-0.3
7,844	+				-0.1
7,845	-				-1.7
7,846	+				-0.9
7,846	+				+0.4
7,846	+				+0.7
7,847	-				-1.4
7,847	-				-0.8
7,887	+				-0.5
7,895	+				-0.5
7,961	+				+0.8
7,962	-				+1.7
7,962	-				-0.2
7,962	-				+0.2
7,972	+				-1.8
7,983	-				-0.3
8,047	+				+2.5
8,048	-				+0.2
8,070	+				-0.7
8,070	+				-0.2
8,070	+				-0.3
8,071	-				+0.2
8,075	+				-0.0
8,075	+				+0.1
8,076	-				+1.3
8,076	-				-0.3
8,076	-				-1.9
8,076	-				+0.4
8,076	-				+0.8
8,076	-				-1.4
8,076	-				-1.5
8,084	+				+1.3
8,084	+				+1.1
8,115	-				+1.8
8,115	-				+2.2
8,117	-				-0.9
8,147	+				+0.3
8,147	+				+1.7
8,147	+				+1.4
8,147	+				-0.9
8,147	+				+0.2
8,147	+				+0.9
8,147	+				-0.4
8,148	-				-0.1
8,148	-				-0.1
8,148	-				+0.2
8,148	-				+1.5
8,148	-				-0.8
8,176	+				-0.5
8,176	+				+0.3
8,176	+				-2.0
8,176	+				-1.0
8,176	+				+3.3
8,176	+				-2.0
8,177	-				-1.1
8,177	-				-0.2
8,177	-				-1.2
8,201	-				+1.1
8,241	+				+1.0
8,241	+				-0.9
8,244	+				-0.8
8,244	+				-1.1
8,244	+				-1.3
8,245	-				+2.2
8,245	-				+2.7
8,250	+				+1.1
8,251	-				-0.0
8,251	-				-2.4
8,270	+				+0.8
8,270	+				-2.0
8,271	-				+1.0
8,271	-				+1.1
8,295	+				-1.0
8,357	+		IAI47_18875	0.12	-0.3
8,357	+		IAI47_18875	0.12	+0.4
8,357	+		IAI47_18875	0.12	+0.1
8,357	+		IAI47_18875	0.12	+0.6
8,357	+		IAI47_18875	0.12	-0.1
8,358	-		IAI47_18875	0.12	+0.5
8,358	-		IAI47_18875	0.12	-0.0
8,358	-		IAI47_18875	0.12	+2.0
8,358	-		IAI47_18875	0.12	+1.1
8,358	-		IAI47_18875	0.12	+0.3
8,358	-		IAI47_18875	0.12	+1.3
8,366	+		IAI47_18875	0.13	-1.4
8,367	-		IAI47_18875	0.13	-0.8
8,367	-		IAI47_18875	0.13	-0.8
8,393	-		IAI47_18875	0.14	-1.0
8,449	+		IAI47_18875	0.18	-0.1
8,456	+		IAI47_18875	0.19	+0.2
8,457	-		IAI47_18875	0.19	+0.8
8,457	-		IAI47_18875	0.19	-1.1
8,459	+		IAI47_18875	0.19	+0.6
8,460	-		IAI47_18875	0.19	-0.4
8,477	+		IAI47_18875	0.20	+2.9
8,477	+		IAI47_18875	0.20	+0.1
8,477	+		IAI47_18875	0.20	+0.7
8,477	+		IAI47_18875	0.20	+0.2
8,478	-		IAI47_18875	0.20	+0.8
8,478	-		IAI47_18875	0.20	-0.4
8,478	-		IAI47_18875	0.20	+1.7
8,478	-		IAI47_18875	0.20	+0.9
8,513	+		IAI47_18875	0.22	-0.2
8,514	-		IAI47_18875	0.22	+0.3
8,514	-		IAI47_18875	0.22	-1.1
8,514	-		IAI47_18875	0.22	-0.1
8,514	-		IAI47_18875	0.22	-0.9
8,514	-		IAI47_18875	0.22	-1.0
8,514	-		IAI47_18875	0.22	-1.7
8,515	+		IAI47_18875	0.23	-0.9
8,559	+		IAI47_18875	0.25	-0.9
8,560	-		IAI47_18875	0.26	+0.4
8,560	-		IAI47_18875	0.26	+0.5
8,560	-		IAI47_18875	0.26	+1.3
8,582	+		IAI47_18875	0.27	-1.0
8,582	+		IAI47_18875	0.27	-0.2
8,582	+		IAI47_18875	0.27	+0.1
8,582	+		IAI47_18875	0.27	+0.4
8,582	+		IAI47_18875	0.27	-0.6
8,583	-		IAI47_18875	0.27	-0.1
8,583	-		IAI47_18875	0.27	-1.7
8,585	-		IAI47_18875	0.27	-1.3
8,585	-		IAI47_18875	0.27	-0.1
8,590	-		IAI47_18875	0.28	+1.2
8,625	-		IAI47_18875	0.30	-0.3
8,641	-		IAI47_18875	0.31	-2.0
8,659	+		IAI47_18875	0.32	-0.6
8,659	+		IAI47_18875	0.32	-1.4
8,685	+		IAI47_18875	0.34	+1.3
8,685	+		IAI47_18875	0.34	-0.3
8,686	-		IAI47_18875	0.34	+1.0