Strain Fitness in Pantoea sp. MT58 around IAI47_10205

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,156,623	-		IAI47_10200	0.56	+0.4
2,156,633	+		IAI47_10200	0.57	+0.0
2,156,634	-		IAI47_10200	0.57	-0.4
2,156,634	-		IAI47_10200	0.57	-2.1
2,156,634	-		IAI47_10200	0.57	-0.0
2,156,689	+		IAI47_10200	0.59	-0.4
2,156,694	+		IAI47_10200	0.59	+0.0
2,156,694	+		IAI47_10200	0.59	-1.8
2,156,694	+		IAI47_10200	0.59	-0.5
2,156,694	+		IAI47_10200	0.59	+1.3
2,156,694	+		IAI47_10200	0.59	+0.3
2,156,695	-		IAI47_10200	0.59	-0.7
2,156,695	-		IAI47_10200	0.59	-1.6
2,156,695	-		IAI47_10200	0.59	+1.6
2,156,698	+		IAI47_10200	0.59	-0.3
2,156,699	-		IAI47_10200	0.59	-2.3
2,156,759	+		IAI47_10200	0.62	+0.1
2,156,759	+		IAI47_10200	0.62	+0.3
2,156,759	+		IAI47_10200	0.62	-1.3
2,156,760	-		IAI47_10200	0.62	+1.2
2,156,760	-		IAI47_10200	0.62	-0.3
2,156,840	-		IAI47_10200	0.66	+0.0
2,156,896	+		IAI47_10200	0.68	+2.1
2,156,896	+		IAI47_10200	0.68	+1.6
2,156,897	-		IAI47_10200	0.68	+1.6
2,157,060	+		IAI47_10200	0.75	+1.3
2,157,060	+		IAI47_10200	0.75	+0.3
2,157,060	+		IAI47_10200	0.75	+1.6
2,157,060	+		IAI47_10200	0.75	-0.4
2,157,061	-		IAI47_10200	0.75	+0.8
2,157,061	-		IAI47_10200	0.75	+2.0
2,157,063	+		IAI47_10200	0.75	+0.7
2,157,063	+		IAI47_10200	0.75	+1.2
2,157,063	+		IAI47_10200	0.75	+1.5
2,157,064	-		IAI47_10200	0.75	+3.4
2,157,064	-		IAI47_10200	0.75	-0.1
2,157,075	-		IAI47_10200	0.76	+1.3
2,157,078	-		IAI47_10200	0.76	-0.1
2,157,078	-		IAI47_10200	0.76	-0.7
2,157,078	-		IAI47_10200	0.76	+0.3
2,157,178	+		IAI47_10200	0.81	+0.8
2,157,178	+		IAI47_10200	0.81	+3.6
2,157,240	-		IAI47_10200	0.83	+1.1
2,157,282	+		IAI47_10200	0.85	-0.5
2,157,306	+		IAI47_10200	0.86	-0.2
2,157,307	-		IAI47_10200	0.86	+0.1
2,157,599	-				-0.2
2,157,641	-				+2.3
2,157,689	+				-0.6
2,157,690	-				-0.9
2,157,690	-				+2.4
2,157,899	+		IAI47_10205	0.24	-1.3
2,157,899	+		IAI47_10205	0.24	-1.1
2,157,900	-		IAI47_10205	0.24	-0.1
2,157,900	-		IAI47_10205	0.24	-1.2
2,157,901	+		IAI47_10205	0.24	-1.3
2,157,902	-		IAI47_10205	0.25	+0.5
2,157,902	-		IAI47_10205	0.25	+0.0
2,157,902	-		IAI47_10205	0.25	-0.1
2,157,902	-		IAI47_10205	0.25	-0.8
2,157,902	-		IAI47_10205	0.25	-0.3
2,157,908	+		IAI47_10205	0.25	-1.5
2,157,909	-		IAI47_10205	0.25	+1.0
2,157,930	+		IAI47_10205	0.27	-1.1
2,157,930	+		IAI47_10205	0.27	+0.7
2,157,931	-		IAI47_10205	0.27	-0.2
2,158,010	+		IAI47_10205	0.34	-0.8
2,158,051	+		IAI47_10205	0.38	+0.8
2,158,051	+		IAI47_10205	0.38	-0.4
2,158,051	+		IAI47_10205	0.38	+0.0
2,158,052	-		IAI47_10205	0.38	-2.4
2,158,052	-		IAI47_10205	0.38	+1.7
2,158,052	-		IAI47_10205	0.38	+0.0
2,158,052	-		IAI47_10205	0.38	+1.0
2,158,052	-		IAI47_10205	0.38	+0.7
2,158,054	+		IAI47_10205	0.38	+1.4
2,158,055	-		IAI47_10205	0.38	+0.7
2,158,055	-		IAI47_10205	0.38	+1.0
2,158,055	-		IAI47_10205	0.38	-0.5
2,158,115	-		IAI47_10205	0.43	-0.6
2,158,179	-		IAI47_10205	0.49	+1.8
2,158,179	-		IAI47_10205	0.49	-2.2
2,158,195	+		IAI47_10205	0.50	-0.7
2,158,196	-		IAI47_10205	0.50	+0.6
2,158,241	+		IAI47_10205	0.54	-1.2
2,158,242	-		IAI47_10205	0.54	-0.2
2,158,260	-		IAI47_10205	0.56	+1.3
2,158,277	+		IAI47_10205	0.57	+1.5
2,158,277	+		IAI47_10205	0.57	-0.8
2,158,278	-		IAI47_10205	0.57	-0.0
2,158,278	-		IAI47_10205	0.57	+1.3
2,158,278	-		IAI47_10205	0.57	-0.4
2,158,425	-		IAI47_10205	0.70	-0.1
2,158,499	+		IAI47_10205	0.77	+0.3
2,158,499	+		IAI47_10205	0.77	-0.5
2,158,499	+		IAI47_10205	0.77	+0.3
2,158,501	+		IAI47_10205	0.77	+1.6
2,158,501	+		IAI47_10205	0.77	+0.3
2,158,501	+		IAI47_10205	0.77	+0.6
2,158,501	+		IAI47_10205	0.77	+0.8
2,158,502	-		IAI47_10205	0.77	+1.4
2,158,674	-				+1.0
2,158,681	+				-0.6
2,158,682	-				-2.2
2,158,682	-				-1.0
2,158,705	+				+1.0
2,158,705	+				-0.5
2,158,705	+				+2.0
2,158,705	+				-0.5
2,158,705	+				-1.3
2,158,706	-				-0.4
2,158,706	-				+1.6
2,158,706	-				+0.3
2,158,751	+				+1.0
2,158,752	-				+1.6
2,158,752	-				+1.6
2,158,752	-				+1.0
2,158,771	+				+0.2
2,158,771	+				+0.0
2,158,772	-				-1.3
2,158,787	+		IAI47_10210	0.13	+0.9
2,158,787	+		IAI47_10210	0.13	+0.6
2,158,787	+		IAI47_10210	0.13	+0.9
2,158,787	+		IAI47_10210	0.13	-0.2
2,158,787	+		IAI47_10210	0.13	+1.3
2,158,788	-		IAI47_10210	0.14	+0.6
2,158,788	-		IAI47_10210	0.14	-1.5
2,158,808	-		IAI47_10210	0.21	-1.2
2,158,808	-		IAI47_10210	0.21	-1.1
2,158,808	-		IAI47_10210	0.21	+0.1
2,158,875	+		IAI47_10210	0.45	+2.1
2,158,876	-		IAI47_10210	0.45	+0.3
2,158,947	-		IAI47_10210	0.71	+0.6
2,158,962	+		IAI47_10210	0.76	-1.8
2,158,963	-		IAI47_10210	0.76	-1.0
2,158,986	+		IAI47_10210	0.85	-1.2
2,158,986	+		IAI47_10210	0.85	-0.3
2,158,986	+		IAI47_10210	0.85	-0.8
2,158,987	-		IAI47_10210	0.85	-0.1
2,158,987	-		IAI47_10210	0.85	-1.2
2,158,987	-		IAI47_10210	0.85	+0.3
2,158,987	-		IAI47_10210	0.85	+0.0
2,159,034	-				-0.5
2,159,034	-				+0.4
2,159,034	-				-0.5
2,159,034	-				+1.4
2,159,034	-				-1.5
2,159,035	+				+0.5
2,159,035	+				-1.2
2,159,035	+				-1.2
2,159,036	-				+0.3
2,159,036	-				+2.1
2,159,102	+				+0.3
2,159,102	+				+1.5
2,159,102	+				+0.7
2,159,102	+				-1.4
2,159,102	+				-1.4
2,159,103	-				+1.4
2,159,134	+		IAI47_10215	0.13	+1.0
2,159,135	-		IAI47_10215	0.14	+0.5
2,159,148	+		IAI47_10215	0.15	-1.2
2,159,148	+		IAI47_10215	0.15	+1.2
2,159,148	+		IAI47_10215	0.15	-1.0
2,159,148	+		IAI47_10215	0.15	+0.4
2,159,198	+		IAI47_10215	0.22	-0.7
2,159,199	-		IAI47_10215	0.22	-0.7
2,159,199	-		IAI47_10215	0.22	+0.8
2,159,199	-		IAI47_10215	0.22	+0.5
2,159,264	+		IAI47_10215	0.31	-0.4
2,159,265	-		IAI47_10215	0.31	-1.5
2,159,270	+		IAI47_10215	0.31	-1.8
2,159,270	+		IAI47_10215	0.31	+0.2
2,159,294	+		IAI47_10215	0.35	-0.1
2,159,400	+		IAI47_10215	0.49	+2.0
2,159,401	-		IAI47_10215	0.49	+0.3
2,159,405	+		IAI47_10215	0.49	+0.2
2,159,405	+		IAI47_10215	0.49	-0.4
2,159,405	+		IAI47_10215	0.49	+0.5
2,159,405	+		IAI47_10215	0.49	-1.1
2,159,405	+		IAI47_10215	0.49	+0.5
2,159,405	+		IAI47_10215	0.49	+0.4
2,159,406	-		IAI47_10215	0.49	+0.2
2,159,406	-		IAI47_10215	0.49	-0.5
2,159,406	-		IAI47_10215	0.49	+0.0
2,159,406	-		IAI47_10215	0.49	-0.4
2,159,406	-		IAI47_10215	0.49	-0.4
2,159,406	-		IAI47_10215	0.49	+1.3
2,159,589	+		IAI47_10215	0.74	+1.3
2,159,590	-		IAI47_10215	0.74	+0.9
2,159,590	-		IAI47_10215	0.74	-0.5
2,159,630	+		IAI47_10215	0.79	+0.2
2,159,633	+		IAI47_10215	0.79	-1.4
2,159,634	-		IAI47_10215	0.80	+0.3
2,159,634	-		IAI47_10215	0.80	-1.4
2,159,634	-		IAI47_10215	0.80	+0.6
2,159,634	-		IAI47_10215	0.80	-0.5
2,159,634	-		IAI47_10215	0.80	+1.1
2,159,634	-		IAI47_10215	0.80	+0.5
2,159,686	-		IAI47_10215	0.87	-2.1
2,159,716	-				-0.9
2,159,720	+				+0.0
2,159,720	+				+0.1
2,159,720	+				+1.6
2,159,720	+				-0.6
2,159,720	+				-0.6
2,159,720	+				-1.2
2,159,720	+				-1.5
2,159,720	+				+0.1
2,159,720	+				+1.3
2,159,720	+				-0.4
2,159,721	-				+1.0
2,159,721	-				+0.6
2,159,721	-				-2.0
2,159,721	-				+0.4
2,159,721	-				+0.5
2,159,721	-				-1.5
2,159,721	-				+0.5
2,159,721	-				-0.3
2,159,721	-				-0.2
2,159,721	-				-0.2
2,159,723	+				+0.2
2,159,723	+				-0.7
2,159,723	+				-0.1
2,159,723	+				+0.1
2,159,723	+				-1.2
2,159,724	-				-1.0
2,159,724	-				+0.8
2,159,724	-				-0.8