Strain Fitness in Pantoea sp. MT58 around IAI47_08525

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,805,074	+		IAI47_08515	0.84	+2.3
1,805,074	+		IAI47_08515	0.84	+0.8
1,805,074	+		IAI47_08515	0.84	+0.3
1,805,074	+		IAI47_08515	0.84	-0.3
1,805,075	-		IAI47_08515	0.84	-1.0
1,805,075	-		IAI47_08515	0.84	-0.3
1,805,075	-		IAI47_08515	0.84	-0.3
1,805,107	+		IAI47_08515	0.85	+1.3
1,805,108	-		IAI47_08515	0.86	+1.6
1,805,111	-		IAI47_08515	0.86	-0.5
1,805,111	-		IAI47_08515	0.86	-0.7
1,805,111	-		IAI47_08515	0.86	-0.1
1,805,111	-		IAI47_08515	0.86	+0.1
1,805,116	+		IAI47_08515	0.86	+2.0
1,805,116	+		IAI47_08515	0.86	-2.0
1,805,116	+		IAI47_08515	0.86	-1.0
1,805,116	+		IAI47_08515	0.86	-1.5
1,805,116	+		IAI47_08515	0.86	+0.5
1,805,117	-		IAI47_08515	0.86	+0.3
1,805,117	-		IAI47_08515	0.86	+1.5
1,805,117	-		IAI47_08515	0.86	-0.6
1,805,117	-		IAI47_08515	0.86	-0.1
1,805,117	-		IAI47_08515	0.86	-0.6
1,805,118	+		IAI47_08515	0.86	+0.3
1,805,119	-		IAI47_08515	0.86	+0.1
1,805,129	-		IAI47_08515	0.87	-1.2
1,805,137	+		IAI47_08515	0.87	-0.8
1,805,161	+		IAI47_08515	0.88	-0.6
1,805,161	+		IAI47_08515	0.88	-0.6
1,805,162	-		IAI47_08515	0.88	+0.8
1,805,209	+				+1.9
1,805,209	+				-0.6
1,805,240	+				-0.6
1,805,241	-				-0.9
1,805,241	-				-1.3
1,805,262	+				+2.2
1,805,262	+				-1.3
1,805,262	+				-1.4
1,805,320	+				+0.7
1,805,320	+				+0.2
1,805,321	-				-1.2
1,805,321	-				+0.9
1,805,329	+				+0.3
1,805,329	+				+1.7
1,805,330	-				+0.3
1,805,351	-				-0.0
1,805,351	-				-1.1
1,805,379	+				+1.1
1,805,379	+				+0.8
1,805,380	-				+2.4
1,805,401	+				-1.1
1,805,401	+				-0.3
1,805,401	+				+1.5
1,805,401	+				+0.9
1,805,402	-				-0.6
1,805,419	+				-0.4
1,805,419	+				-1.2
1,805,419	+				+0.7
1,805,419	+				-0.1
1,805,423	+				+0.5
1,805,465	+				-0.7
1,805,465	+				+0.0
1,805,465	+				-2.4
1,805,465	+				+0.2
1,805,466	-				+1.5
1,805,473	-		IAI47_08520	0.11	+0.3
1,805,486	-		IAI47_08520	0.13	+0.7
1,805,486	-		IAI47_08520	0.13	-0.2
1,805,508	+		IAI47_08520	0.16	-1.4
1,805,530	+		IAI47_08520	0.19	+0.4
1,805,530	+		IAI47_08520	0.19	-0.2
1,805,531	-		IAI47_08520	0.19	+1.5
1,805,531	-		IAI47_08520	0.19	-1.0
1,805,621	+		IAI47_08520	0.33	+1.1
1,805,621	+		IAI47_08520	0.33	+0.8
1,805,622	-		IAI47_08520	0.33	+1.8
1,805,647	+		IAI47_08520	0.37	-1.0
1,805,647	+		IAI47_08520	0.37	-0.5
1,805,647	+		IAI47_08520	0.37	-1.5
1,805,647	+		IAI47_08520	0.37	-2.3
1,805,647	+		IAI47_08520	0.37	+2.5
1,805,647	+		IAI47_08520	0.37	-2.6
1,805,647	+		IAI47_08520	0.37	-0.1
1,805,647	+		IAI47_08520	0.37	+0.1
1,805,648	-		IAI47_08520	0.37	-0.5
1,805,648	-		IAI47_08520	0.37	-0.6
1,805,648	-		IAI47_08520	0.37	-0.7
1,805,648	-		IAI47_08520	0.37	-0.5
1,805,648	-		IAI47_08520	0.37	+1.9
1,805,648	-		IAI47_08520	0.37	+2.3
1,805,648	-		IAI47_08520	0.37	-0.5
1,805,656	+		IAI47_08520	0.38	+0.6
1,805,656	+		IAI47_08520	0.38	+0.2
1,805,657	-		IAI47_08520	0.38	-1.0
1,805,657	-		IAI47_08520	0.38	+1.6
1,805,657	-		IAI47_08520	0.38	+1.5
1,805,657	-		IAI47_08520	0.38	-0.3
1,805,719	-		IAI47_08520	0.47	+1.6
1,805,719	-		IAI47_08520	0.47	+0.7
1,805,719	-		IAI47_08520	0.47	+0.0
1,805,734	+		IAI47_08520	0.50	+1.4
1,805,735	-		IAI47_08520	0.50	-0.5
1,805,738	+		IAI47_08520	0.50	+0.9
1,805,738	+		IAI47_08520	0.50	-0.3
1,805,739	-		IAI47_08520	0.50	+0.4
1,805,739	-		IAI47_08520	0.50	+0.1
1,805,739	-		IAI47_08520	0.50	+1.1
1,805,739	-		IAI47_08520	0.50	-0.6
1,805,739	-		IAI47_08520	0.50	-2.7
1,805,739	-		IAI47_08520	0.50	+0.7
1,805,791	+		IAI47_08520	0.58	-0.6
1,805,792	-		IAI47_08520	0.58	+1.9
1,805,839	+		IAI47_08520	0.65	+0.2
1,805,840	-		IAI47_08520	0.65	-0.5
1,805,854	+		IAI47_08520	0.68	-1.7
1,805,857	+		IAI47_08520	0.68	+2.4
1,805,919	+		IAI47_08520	0.77	+1.2
1,805,919	+		IAI47_08520	0.77	-1.5
1,805,919	+		IAI47_08520	0.77	-1.0
1,805,919	+		IAI47_08520	0.77	-0.5
1,805,920	-		IAI47_08520	0.77	+1.5
1,805,920	-		IAI47_08520	0.77	+3.4
1,805,920	-		IAI47_08520	0.77	-0.5
1,805,920	-		IAI47_08520	0.77	+0.4
1,805,920	-		IAI47_08520	0.77	-0.0
1,805,920	-		IAI47_08520	0.77	+0.1
1,805,920	-		IAI47_08520	0.77	-1.4
1,805,920	-		IAI47_08520	0.77	+0.7
1,805,920	-		IAI47_08520	0.77	+1.1
1,805,920	-		IAI47_08520	0.77	+1.3
1,805,920	-		IAI47_08520	0.77	+0.1
1,805,988	-		IAI47_08520	0.88	-0.5
1,805,988	-		IAI47_08520	0.88	+0.1
1,805,988	-		IAI47_08520	0.88	-0.1
1,806,021	+				-2.0
1,806,021	+				-0.3
1,806,051	-				+2.4
1,806,090	+				-0.7
1,806,090	+				+0.7
1,806,090	+				+1.9
1,806,091	-				+0.5
1,806,208	+		IAI47_08525	0.60	-0.5
1,806,208	+		IAI47_08525	0.60	-1.1
1,806,208	+		IAI47_08525	0.60	-1.2
1,806,208	+		IAI47_08525	0.60	+1.3
1,806,208	+		IAI47_08525	0.60	+0.1
1,806,208	+		IAI47_08525	0.60	-0.3
1,806,209	-		IAI47_08525	0.60	+1.3
1,806,209	-		IAI47_08525	0.60	+1.3
1,806,210	+		IAI47_08525	0.61	+0.5
1,806,210	+		IAI47_08525	0.61	-0.0
1,806,210	+		IAI47_08525	0.61	+1.1
1,806,210	+		IAI47_08525	0.61	+0.2
1,806,211	-		IAI47_08525	0.61	+0.6
1,806,211	-		IAI47_08525	0.61	-0.7
1,806,220	+		IAI47_08525	0.65	+3.3
1,806,254	+		IAI47_08525	0.79	+4.3
1,806,254	+		IAI47_08525	0.79	+0.8
1,806,254	+		IAI47_08525	0.79	+1.2
1,806,254	+		IAI47_08525	0.79	-0.9
1,806,254	+		IAI47_08525	0.79	+0.4
1,806,254	+		IAI47_08525	0.79	+0.4
1,806,254	+		IAI47_08525	0.79	-0.8
1,806,254	+		IAI47_08525	0.79	+0.1
1,806,254	+		IAI47_08525	0.79	+1.3
1,806,254	+		IAI47_08525	0.79	+1.7
1,806,255	-		IAI47_08525	0.80	-0.1
1,806,255	-		IAI47_08525	0.80	-0.5
1,806,255	-		IAI47_08525	0.80	-0.7
1,806,301	+				-1.2
1,806,301	+				+2.7
1,806,301	+				-0.7
1,806,302	-				-0.2
1,806,305	+				-1.3
1,806,305	+				-1.1
1,806,305	+				-1.0
1,806,305	+				+0.5
1,806,306	-				-1.1
1,806,306	-				+0.8
1,806,331	+				+1.4
1,806,331	+				+0.2
1,806,359	+				+0.2
1,806,360	-				+2.7
1,806,389	+				+2.0
1,806,389	+				-0.7
1,806,421	-				-0.1
1,806,438	+				+1.4
1,806,452	+				-1.4
1,806,452	+				+0.4
1,806,453	-				-0.9
1,806,453	-				-0.3
1,806,482	+				+1.8
1,806,482	+				+0.1
1,806,482	+				+2.3
1,806,482	+				+0.4
1,806,483	-				+0.6
1,806,483	-				+2.1
1,806,483	-				+0.1
1,806,483	-				+0.5
1,806,483	-				+2.9
1,806,484	+				-1.0
1,806,485	-				-0.1
1,806,485	-				-0.1
1,806,485	-				+0.8
1,806,485	-				+0.1
1,806,620	+		IAI47_08530	0.44	-1.5
1,806,620	+		IAI47_08530	0.44	+4.3
1,806,620	+		IAI47_08530	0.44	+0.3
1,806,620	+		IAI47_08530	0.44	+2.5
1,806,620	+		IAI47_08530	0.44	-0.6
1,806,621	-		IAI47_08530	0.44	-0.3
1,806,621	-		IAI47_08530	0.44	+2.6
1,806,742	+		IAI47_08530	0.76	+0.1
1,806,753	-		IAI47_08530	0.79	+0.6
1,806,756	+		IAI47_08530	0.80	+0.1
1,806,756	+				+0.0
1,806,757	-		IAI47_08530	0.80	+1.0
1,806,794	+				+1.1
1,806,795	-				+0.4
1,806,811	-				-0.6
1,806,818	+				-0.4
1,806,819	-				+0.1
1,806,819	-				+0.7
1,806,828	+				+1.7
1,806,828	+				-0.5
1,806,829	-				-1.5
1,806,829	-				+0.7
1,806,829	-				+0.3
1,806,873	+				+0.3
1,806,873	+				+0.5
1,806,907	+				+0.7
1,806,908	-				-0.8
1,806,908	-				-1.5
1,806,908	-				+1.3
1,807,034	+		IAI47_08535	0.23	+0.6
1,807,035	-		IAI47_08535	0.23	+0.4
1,807,054	-		IAI47_08535	0.25	-1.5
1,807,072	-		IAI47_08535	0.27	+0.3
1,807,072	-		IAI47_08535	0.27	+1.2
1,807,115	+		IAI47_08535	0.32	+0.7
1,807,157	+		IAI47_08535	0.37	-1.7
1,807,187	+		IAI47_08535	0.40	-0.6
1,807,187	+		IAI47_08535	0.40	+0.5
1,807,188	-		IAI47_08535	0.40	+0.7
1,807,204	-		IAI47_08535	0.42	+1.2
1,807,229	+		IAI47_08535	0.45	+0.8
1,807,229	+		IAI47_08535	0.45	+1.1
1,807,230	-		IAI47_08535	0.45	+0.1
1,807,230	-		IAI47_08535	0.45	-0.3
1,807,230	-		IAI47_08535	0.45	+0.2
1,807,230	-		IAI47_08535	0.45	+2.1
1,807,230	-		IAI47_08535	0.45	-0.0
1,807,279	-		IAI47_08535	0.51	+2.2
1,807,296	+		IAI47_08535	0.53	+0.1
1,807,297	-		IAI47_08535	0.53	+0.9