Strain Fitness in Pantoea sp. MT58 around IAI47_07800

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07790 and IAI47_07795 are separated by 64 nucleotidesIAI47_07795 and IAI47_07800 are separated by 79 nucleotidesIAI47_07800 and IAI47_07805 are separated by 26 nucleotides IAI47_07790: IAI47_07790 - ribose 1,5-bisphosphokinase, at 1,649,385 to 1,649,921 _07790 IAI47_07795: IAI47_07795 - phosphonate metabolism protein PhnP, at 1,649,986 to 1,650,756 _07795 IAI47_07800: IAI47_07800 - phosphonate ABC transporter ATP-binding protein, at 1,650,836 to 1,651,666 _07800 IAI47_07805: IAI47_07805 - phosphonate ABC transporter substrate-binding protein, at 1,651,693 to 1,652,619 _07805 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1649.902 kb on + strandat 1649.903 kb on - strandat 1649.946 kb on + strandat 1649.947 kb on - strandat 1649.947 kb on - strandat 1649.963 kb on + strandat 1649.964 kb on - strandat 1649.964 kb on - strandat 1649.965 kb on + strandat 1649.965 kb on + strandat 1649.965 kb on + strandat 1649.965 kb on + strandat 1649.966 kb on - strandat 1649.966 kb on - strandat 1649.966 kb on - strandat 1649.966 kb on - strandat 1649.966 kb on - strandat 1649.985 kb on + strandat 1650.072 kb on + strand, within IAI47_07795at 1650.072 kb on + strand, within IAI47_07795at 1650.208 kb on + strand, within IAI47_07795at 1650.311 kb on - strand, within IAI47_07795at 1650.311 kb on - strand, within IAI47_07795at 1650.348 kb on - strand, within IAI47_07795at 1650.427 kb on + strand, within IAI47_07795at 1650.427 kb on + strand, within IAI47_07795at 1650.471 kb on + strand, within IAI47_07795at 1650.472 kb on - strand, within IAI47_07795at 1650.472 kb on - strand, within IAI47_07795at 1650.602 kb on + strand, within IAI47_07795at 1650.660 kb on + strand, within IAI47_07795at 1650.660 kb on + strand, within IAI47_07795at 1650.660 kb on + strand, within IAI47_07795at 1650.661 kb on - strand, within IAI47_07795at 1650.661 kb on - strand, within IAI47_07795at 1650.795 kb on + strandat 1650.795 kb on + strandat 1650.795 kb on + strandat 1650.796 kb on - strandat 1650.796 kb on - strandat 1650.796 kb on - strandat 1650.796 kb on - strandat 1650.796 kb on - strandat 1650.799 kb on - strandat 1650.928 kb on + strand, within IAI47_07800at 1650.928 kb on + strand, within IAI47_07800at 1650.929 kb on - strand, within IAI47_07800at 1650.935 kb on + strand, within IAI47_07800at 1650.935 kb on + strand, within IAI47_07800at 1650.936 kb on - strand, within IAI47_07800at 1651.057 kb on + strand, within IAI47_07800at 1651.057 kb on + strand, within IAI47_07800at 1651.058 kb on - strand, within IAI47_07800at 1651.108 kb on + strand, within IAI47_07800at 1651.108 kb on + strand, within IAI47_07800at 1651.109 kb on - strand, within IAI47_07800at 1651.109 kb on - strand, within IAI47_07800at 1651.123 kb on + strand, within IAI47_07800at 1651.124 kb on - strand, within IAI47_07800at 1651.468 kb on + strand, within IAI47_07800at 1651.469 kb on - strand, within IAI47_07800at 1651.547 kb on + strand, within IAI47_07800at 1651.709 kb on + strandat 1651.709 kb on + strandat 1651.709 kb on + strandat 1651.710 kb on - strandat 1651.770 kb on + strandat 1651.770 kb on + strandat 1651.770 kb on + strandat 1651.770 kb on + strandat 1651.770 kb on + strandat 1651.771 kb on - strandat 1651.771 kb on - strandat 1651.771 kb on - strandat 1651.771 kb on - strandat 1651.782 kb on + strandat 1651.783 kb on - strandat 1651.845 kb on + strand, within IAI47_07805at 1651.929 kb on + strand, within IAI47_07805at 1651.930 kb on - strand, within IAI47_07805at 1651.969 kb on + strand, within IAI47_07805at 1651.969 kb on + strand, within IAI47_07805at 1651.969 kb on + strand, within IAI47_07805at 1651.970 kb on - strand, within IAI47_07805at 1651.970 kb on - strand, within IAI47_07805at 1652.004 kb on + strand, within IAI47_07805at 1652.005 kb on - strand, within IAI47_07805at 1652.058 kb on + strand, within IAI47_07805at 1652.058 kb on + strand, within IAI47_07805at 1652.059 kb on - strand, within IAI47_07805at 1652.163 kb on + strand, within IAI47_07805at 1652.163 kb on + strand, within IAI47_07805at 1652.164 kb on - strand, within IAI47_07805at 1652.164 kb on - strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.197 kb on + strand, within IAI47_07805at 1652.198 kb on - strand, within IAI47_07805at 1652.198 kb on - strand, within IAI47_07805at 1652.198 kb on - strand, within IAI47_07805at 1652.199 kb on + strand, within IAI47_07805at 1652.199 kb on + strand, within IAI47_07805at 1652.200 kb on - strand, within IAI47_07805at 1652.200 kb on - strand, within IAI47_07805at 1652.200 kb on - strand, within IAI47_07805at 1652.266 kb on - strand, within IAI47_07805at 1652.311 kb on + strand, within IAI47_07805at 1652.312 kb on - strand, within IAI47_07805at 1652.312 kb on - strand, within IAI47_07805at 1652.323 kb on + strand, within IAI47_07805at 1652.516 kb on + strand, within IAI47_07805at 1652.516 kb on + strand, within IAI47_07805at 1652.517 kb on - strand, within IAI47_07805at 1652.517 kb on - strand, within IAI47_07805at 1652.541 kb on + strandat 1652.567 kb on - strandat 1652.568 kb on + strandat 1652.568 kb on + strandat 1652.568 kb on + strandat 1652.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,649,902 + -0.3
1,649,903 - +1.3
1,649,946 + -0.0
1,649,947 - -0.3
1,649,947 - +0.3
1,649,963 + -0.0
1,649,964 - +1.5
1,649,964 - -0.5
1,649,965 + -0.2
1,649,965 + -0.0
1,649,965 + +1.2
1,649,965 + +0.0
1,649,966 - +0.9
1,649,966 - -0.7
1,649,966 - -0.5
1,649,966 - -0.1
1,649,966 - +1.1
1,649,985 + -0.2
1,650,072 + IAI47_07795 0.11 -1.0
1,650,072 + IAI47_07795 0.11 +1.5
1,650,208 + IAI47_07795 0.29 +0.1
1,650,311 - IAI47_07795 0.42 +0.0
1,650,311 - IAI47_07795 0.42 -0.9
1,650,348 - IAI47_07795 0.47 +0.9
1,650,427 + IAI47_07795 0.57 -1.1
1,650,427 + IAI47_07795 0.57 +1.5
1,650,471 + IAI47_07795 0.63 +2.4
1,650,472 - IAI47_07795 0.63 +0.4
1,650,472 - IAI47_07795 0.63 +0.1
1,650,602 + IAI47_07795 0.80 +0.5
1,650,660 + IAI47_07795 0.87 +0.9
1,650,660 + IAI47_07795 0.87 -0.6
1,650,660 + IAI47_07795 0.87 +1.1
1,650,661 - IAI47_07795 0.88 +5.5
1,650,661 - IAI47_07795 0.88 +0.1
1,650,795 + +1.8
1,650,795 + +2.5
1,650,795 + +0.4
1,650,796 - +0.6
1,650,796 - +1.5
1,650,796 - -0.1
1,650,796 - -1.5
1,650,796 - +2.0
1,650,799 - -0.0
1,650,928 + IAI47_07800 0.11 +2.1
1,650,928 + IAI47_07800 0.11 -1.8
1,650,929 - IAI47_07800 0.11 -0.6
1,650,935 + IAI47_07800 0.12 -1.1
1,650,935 + IAI47_07800 0.12 +0.7
1,650,936 - IAI47_07800 0.12 +0.9
1,651,057 + IAI47_07800 0.27 +0.1
1,651,057 + IAI47_07800 0.27 +0.5
1,651,058 - IAI47_07800 0.27 +1.9
1,651,108 + IAI47_07800 0.33 +0.8
1,651,108 + IAI47_07800 0.33 +0.4
1,651,109 - IAI47_07800 0.33 +1.6
1,651,109 - IAI47_07800 0.33 -1.1
1,651,123 + IAI47_07800 0.35 +2.5
1,651,124 - IAI47_07800 0.35 -1.6
1,651,468 + IAI47_07800 0.76 -0.2
1,651,469 - IAI47_07800 0.76 -0.1
1,651,547 + IAI47_07800 0.86 +0.1
1,651,709 + +0.1
1,651,709 + -0.8
1,651,709 + +0.9
1,651,710 - +0.7
1,651,770 + -0.7
1,651,770 + +1.3
1,651,770 + +1.2
1,651,770 + -1.5
1,651,770 + +0.6
1,651,771 - +0.0
1,651,771 - -0.4
1,651,771 - +0.4
1,651,771 - -0.7
1,651,782 + -2.0
1,651,783 - -0.7
1,651,845 + IAI47_07805 0.16 +0.6
1,651,929 + IAI47_07805 0.25 -0.6
1,651,930 - IAI47_07805 0.26 +1.6
1,651,969 + IAI47_07805 0.30 -0.1
1,651,969 + IAI47_07805 0.30 -0.9
1,651,969 + IAI47_07805 0.30 +0.9
1,651,970 - IAI47_07805 0.30 +0.2
1,651,970 - IAI47_07805 0.30 +0.6
1,652,004 + IAI47_07805 0.34 -0.3
1,652,005 - IAI47_07805 0.34 +1.7
1,652,058 + IAI47_07805 0.39 -1.5
1,652,058 + IAI47_07805 0.39 +0.0
1,652,059 - IAI47_07805 0.39 -0.3
1,652,163 + IAI47_07805 0.51 -1.7
1,652,163 + IAI47_07805 0.51 -1.6
1,652,164 - IAI47_07805 0.51 +2.6
1,652,164 - IAI47_07805 0.51 -0.7
1,652,197 + IAI47_07805 0.54 +2.2
1,652,197 + IAI47_07805 0.54 +1.5
1,652,197 + IAI47_07805 0.54 +1.9
1,652,197 + IAI47_07805 0.54 -0.2
1,652,197 + IAI47_07805 0.54 -0.6
1,652,197 + IAI47_07805 0.54 +0.7
1,652,197 + IAI47_07805 0.54 +0.7
1,652,197 + IAI47_07805 0.54 -0.1
1,652,197 + IAI47_07805 0.54 -0.8
1,652,198 - IAI47_07805 0.54 +1.2
1,652,198 - IAI47_07805 0.54 -0.9
1,652,198 - IAI47_07805 0.54 +0.7
1,652,199 + IAI47_07805 0.55 -1.7
1,652,199 + IAI47_07805 0.55 -0.5
1,652,200 - IAI47_07805 0.55 +0.6
1,652,200 - IAI47_07805 0.55 +1.3
1,652,200 - IAI47_07805 0.55 +0.6
1,652,266 - IAI47_07805 0.62 -1.1
1,652,311 + IAI47_07805 0.67 -2.4
1,652,312 - IAI47_07805 0.67 +1.8
1,652,312 - IAI47_07805 0.67 +1.8
1,652,323 + IAI47_07805 0.68 +0.4
1,652,516 + IAI47_07805 0.89 +2.1
1,652,516 + IAI47_07805 0.89 -0.4
1,652,517 - IAI47_07805 0.89 +0.1
1,652,517 - IAI47_07805 0.89 +0.6
1,652,541 + -0.2
1,652,567 - +0.8
1,652,568 + -1.4
1,652,568 + -2.4
1,652,568 + +1.6
1,652,584 - +1.3

Or see this region's nucleotide sequence