Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04650 and IAI47_04655 are separated by 1 nucleotides IAI47_04655 and IAI47_04660 are separated by 12 nucleotides IAI47_04660 and IAI47_04665 are separated by 623 nucleotides
IAI47_04650: IAI47_04650 - sugar ABC transporter ATP-binding protein, at 978,858 to 980,363
_04650
IAI47_04655: IAI47_04655 - substrate-binding domain-containing protein, at 980,365 to 981,348
_04655
IAI47_04660: IAI47_04660 - DeoR/GlpR transcriptional regulator, at 981,361 to 982,191
_04660
IAI47_04665: IAI47_04665 - ABC transporter substrate-binding protein, at 982,815 to 983,966
_04665
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 980.363 kb on + strand at 980.363 kb on + strand at 980.380 kb on + strand at 980.381 kb on - strand at 980.381 kb on - strand at 980.458 kb on + strand at 980.459 kb on - strand at 980.459 kb on - strand at 980.493 kb on + strand, within IAI47_04655 at 980.493 kb on + strand, within IAI47_04655 at 980.526 kb on + strand, within IAI47_04655 at 980.567 kb on + strand, within IAI47_04655 at 980.567 kb on + strand, within IAI47_04655 at 980.568 kb on - strand, within IAI47_04655 at 980.587 kb on - strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.754 kb on + strand, within IAI47_04655 at 980.820 kb on - strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.900 kb on + strand, within IAI47_04655 at 980.900 kb on + strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.969 kb on - strand, within IAI47_04655 at 981.100 kb on - strand, within IAI47_04655 at 981.162 kb on + strand, within IAI47_04655 at 981.162 kb on + strand, within IAI47_04655 at 981.186 kb on + strand, within IAI47_04655 at 981.210 kb on + strand, within IAI47_04655 at 981.210 kb on + strand, within IAI47_04655 at 981.211 kb on - strand, within IAI47_04655 at 981.211 kb on - strand, within IAI47_04655 at 981.264 kb on + strand at 981.264 kb on + strand at 981.265 kb on - strand at 981.265 kb on - strand at 981.271 kb on - strand at 981.279 kb on + strand at 981.320 kb on - strand at 981.320 kb on - strand at 981.320 kb on - strand at 981.333 kb on + strand at 981.374 kb on - strand at 981.374 kb on - strand at 981.374 kb on - strand at 981.388 kb on - strand at 981.390 kb on - strand at 981.457 kb on + strand, within IAI47_04660 at 981.457 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.500 kb on - strand, within IAI47_04660 at 981.528 kb on + strand, within IAI47_04660 at 981.528 kb on + strand, within IAI47_04660 at 981.594 kb on + strand, within IAI47_04660 at 981.594 kb on + strand, within IAI47_04660 at 981.595 kb on - strand, within IAI47_04660 at 981.614 kb on - strand, within IAI47_04660 at 981.614 kb on - strand, within IAI47_04660 at 981.617 kb on + strand, within IAI47_04660 at 981.617 kb on + strand, within IAI47_04660 at 981.639 kb on + strand, within IAI47_04660 at 981.640 kb on - strand, within IAI47_04660 at 981.657 kb on + strand, within IAI47_04660 at 981.725 kb on + strand, within IAI47_04660 at 981.744 kb on + strand, within IAI47_04660 at 981.745 kb on - strand, within IAI47_04660 at 981.745 kb on - strand, within IAI47_04660 at 981.778 kb on + strand, within IAI47_04660 at 981.800 kb on - strand, within IAI47_04660 at 981.800 kb on - strand, within IAI47_04660 at 981.802 kb on + strand, within IAI47_04660 at 981.803 kb on - strand, within IAI47_04660 at 981.803 kb on - strand, within IAI47_04660 at 981.839 kb on + strand, within IAI47_04660 at 981.840 kb on - strand, within IAI47_04660 at 981.852 kb on + strand, within IAI47_04660 at 981.853 kb on - strand, within IAI47_04660 at 981.858 kb on + strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.865 kb on + strand, within IAI47_04660 at 981.866 kb on - strand, within IAI47_04660 at 981.888 kb on + strand, within IAI47_04660 at 981.888 kb on + strand, within IAI47_04660 at 981.889 kb on - strand, within IAI47_04660 at 981.889 kb on - strand, within IAI47_04660 at 981.912 kb on + strand, within IAI47_04660 at 981.912 kb on + strand, within IAI47_04660 at 981.939 kb on + strand, within IAI47_04660 at 981.940 kb on - strand, within IAI47_04660 at 981.985 kb on - strand, within IAI47_04660 at 982.045 kb on + strand, within IAI47_04660 at 982.046 kb on - strand, within IAI47_04660 at 982.049 kb on - strand, within IAI47_04660 at 982.073 kb on - strand, within IAI47_04660 at 982.144 kb on + strand at 982.145 kb on - strand at 982.146 kb on + strand at 982.147 kb on - strand at 982.150 kb on - strand at 982.191 kb on + strand at 982.191 kb on + strand at 982.191 kb on + strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.195 kb on + strand at 982.195 kb on + strand at 982.195 kb on + strand at 982.196 kb on - strand at 982.209 kb on + strand at 982.209 kb on + strand at 982.211 kb on + strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.216 kb on + strand at 982.216 kb on + strand at 982.217 kb on - strand at 982.266 kb on + strand at 982.285 kb on + strand at 982.305 kb on - strand at 982.361 kb on + strand at 982.368 kb on - strand at 982.369 kb on + strand at 982.369 kb on + strand at 982.369 kb on + strand at 982.370 kb on - strand at 982.370 kb on - strand at 982.370 kb on - strand at 982.378 kb on + strand at 982.378 kb on + strand at 982.379 kb on - strand at 982.400 kb on + strand at 982.400 kb on + strand at 982.401 kb on - strand at 982.405 kb on + strand at 982.405 kb on + strand at 982.405 kb on + strand at 982.406 kb on - strand at 982.407 kb on + strand at 982.408 kb on - strand at 982.408 kb on - strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.466 kb on - strand at 982.498 kb on + strand at 982.498 kb on + strand at 982.499 kb on - strand at 982.610 kb on + strand at 982.629 kb on + strand at 982.629 kb on + strand at 982.705 kb on + strand at 982.705 kb on + strand at 982.706 kb on - strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.822 kb on - strand at 982.822 kb on - strand at 982.835 kb on - strand at 982.838 kb on - strand at 982.838 kb on - strand at 982.838 kb on - strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.899 kb on - strand at 982.903 kb on + strand at 982.904 kb on - strand at 982.978 kb on + strand, within IAI47_04665 at 982.979 kb on - strand, within IAI47_04665 at 982.979 kb on - strand, within IAI47_04665 at 983.088 kb on + strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 980,363 + -0.7 980,363 + +0.2 980,380 + +1.4 980,381 - +0.7 980,381 - -1.6 980,458 + -0.6 980,459 - +0.0 980,459 - -0.6 980,493 + IAI47_04655 0.13 -0.3 980,493 + IAI47_04655 0.13 -0.7 980,526 + IAI47_04655 0.16 +3.5 980,567 + IAI47_04655 0.21 +1.1 980,567 + IAI47_04655 0.21 -0.5 980,568 - IAI47_04655 0.21 +3.0 980,587 - IAI47_04655 0.23 -0.2 980,733 + IAI47_04655 0.37 -0.2 980,733 + IAI47_04655 0.37 -0.0 980,733 + IAI47_04655 0.37 -0.5 980,733 + IAI47_04655 0.37 +1.4 980,733 + IAI47_04655 0.37 -0.5 980,733 + IAI47_04655 0.37 +0.5 980,734 - IAI47_04655 0.38 -0.2 980,734 - IAI47_04655 0.38 +0.5 980,734 - IAI47_04655 0.38 +1.7 980,734 - IAI47_04655 0.38 +0.2 980,754 + IAI47_04655 0.40 -1.2 980,820 - IAI47_04655 0.46 +0.2 980,834 + IAI47_04655 0.48 -2.4 980,834 + IAI47_04655 0.48 +1.2 980,834 + IAI47_04655 0.48 +0.9 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 -1.0 980,891 + IAI47_04655 0.53 +1.4 980,891 + IAI47_04655 0.53 -1.5 980,891 + IAI47_04655 0.53 +5.2 980,891 + IAI47_04655 0.53 -1.6 980,891 + IAI47_04655 0.53 +0.1 980,891 + IAI47_04655 0.53 +0.6 980,891 + IAI47_04655 0.53 +0.3 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 +2.1 980,891 + IAI47_04655 0.53 +0.0 980,891 + IAI47_04655 0.53 +0.2 980,891 + IAI47_04655 0.53 +0.6 980,891 + IAI47_04655 0.53 +2.1 980,891 + IAI47_04655 0.53 -1.3 980,891 + IAI47_04655 0.53 -0.2 980,891 + IAI47_04655 0.53 +2.1 980,891 + IAI47_04655 0.53 +1.2 980,891 + IAI47_04655 0.53 -0.2 980,891 + IAI47_04655 0.53 +0.4 980,891 + IAI47_04655 0.53 -0.9 980,891 + IAI47_04655 0.53 +0.6 980,892 - IAI47_04655 0.54 +1.2 980,892 - IAI47_04655 0.54 -1.5 980,892 - IAI47_04655 0.54 -1.2 980,892 - IAI47_04655 0.54 +0.5 980,892 - IAI47_04655 0.54 -0.3 980,892 - IAI47_04655 0.54 -2.0 980,892 - IAI47_04655 0.54 +0.1 980,892 - IAI47_04655 0.54 +0.9 980,892 - IAI47_04655 0.54 +1.0 980,892 - IAI47_04655 0.54 -0.0 980,892 - IAI47_04655 0.54 -1.5 980,892 - IAI47_04655 0.54 -1.4 980,892 - IAI47_04655 0.54 +1.9 980,892 - IAI47_04655 0.54 -0.7 980,892 - IAI47_04655 0.54 -1.7 980,892 - IAI47_04655 0.54 +1.3 980,892 - IAI47_04655 0.54 +2.4 980,892 - IAI47_04655 0.54 +0.9 980,892 - IAI47_04655 0.54 +1.8 980,892 - IAI47_04655 0.54 +2.1 980,892 - IAI47_04655 0.54 +1.4 980,892 - IAI47_04655 0.54 -0.2 980,900 + IAI47_04655 0.54 -0.5 980,900 + IAI47_04655 0.54 -0.3 980,901 - IAI47_04655 0.54 -0.0 980,901 - IAI47_04655 0.54 +1.6 980,901 - IAI47_04655 0.54 +0.4 980,940 + IAI47_04655 0.58 +0.2 980,940 + IAI47_04655 0.58 +0.7 980,940 + IAI47_04655 0.58 -1.1 980,941 - IAI47_04655 0.59 +0.7 980,941 - IAI47_04655 0.59 +1.2 980,941 - IAI47_04655 0.59 -1.3 980,941 - IAI47_04655 0.59 +1.7 980,941 - IAI47_04655 0.59 +0.5 980,941 - IAI47_04655 0.59 +0.8 980,969 - IAI47_04655 0.61 -1.1 981,100 - IAI47_04655 0.75 +1.7 981,162 + IAI47_04655 0.81 +1.8 981,162 + IAI47_04655 0.81 +0.4 981,186 + IAI47_04655 0.83 -0.6 981,210 + IAI47_04655 0.86 +0.9 981,210 + IAI47_04655 0.86 +0.0 981,211 - IAI47_04655 0.86 +0.4 981,211 - IAI47_04655 0.86 -0.2 981,264 + +1.7 981,264 + -1.7 981,265 - +0.3 981,265 - +1.1 981,271 - -1.3 981,279 + +1.1 981,320 - -0.2 981,320 - -0.1 981,320 - -0.2 981,333 + -0.2 981,374 - +0.7 981,374 - -0.8 981,374 - -1.3 981,388 - -1.6 981,390 - -0.5 981,457 + IAI47_04660 0.12 -3.0 981,457 + IAI47_04660 0.12 +0.5 981,468 + IAI47_04660 0.13 -1.4 981,468 + IAI47_04660 0.13 +1.0 981,468 + IAI47_04660 0.13 +2.0 981,499 + IAI47_04660 0.17 +0.5 981,499 + IAI47_04660 0.17 -0.6 981,499 + IAI47_04660 0.17 -0.2 981,499 + IAI47_04660 0.17 +0.7 981,500 - IAI47_04660 0.17 -0.3 981,528 + IAI47_04660 0.20 -2.0 981,528 + IAI47_04660 0.20 -2.6 981,594 + IAI47_04660 0.28 +0.3 981,594 + IAI47_04660 0.28 +2.2 981,595 - IAI47_04660 0.28 -1.0 981,614 - IAI47_04660 0.30 -0.3 981,614 - IAI47_04660 0.30 +1.1 981,617 + IAI47_04660 0.31 +4.0 981,617 + IAI47_04660 0.31 -1.6 981,639 + IAI47_04660 0.33 -0.3 981,640 - IAI47_04660 0.34 -0.7 981,657 + IAI47_04660 0.36 -0.5 981,725 + IAI47_04660 0.44 -1.0 981,744 + IAI47_04660 0.46 -0.3 981,745 - IAI47_04660 0.46 -0.5 981,745 - IAI47_04660 0.46 +1.9 981,778 + IAI47_04660 0.50 -2.3 981,800 - IAI47_04660 0.53 -1.5 981,800 - IAI47_04660 0.53 -0.5 981,802 + IAI47_04660 0.53 +0.4 981,803 - IAI47_04660 0.53 +0.3 981,803 - IAI47_04660 0.53 -0.9 981,839 + IAI47_04660 0.58 -1.0 981,840 - IAI47_04660 0.58 +0.2 981,852 + IAI47_04660 0.59 -0.1 981,853 - IAI47_04660 0.59 +0.4 981,858 + IAI47_04660 0.60 +2.3 981,859 - IAI47_04660 0.60 +0.3 981,859 - IAI47_04660 0.60 -1.3 981,859 - IAI47_04660 0.60 -0.2 981,859 - IAI47_04660 0.60 +0.3 981,859 - IAI47_04660 0.60 +0.5 981,865 + IAI47_04660 0.61 -0.1 981,866 - IAI47_04660 0.61 -0.7 981,888 + IAI47_04660 0.63 +0.8 981,888 + IAI47_04660 0.63 -0.5 981,889 - IAI47_04660 0.64 -1.7 981,889 - IAI47_04660 0.64 +0.6 981,912 + IAI47_04660 0.66 +0.8 981,912 + IAI47_04660 0.66 +1.0 981,939 + IAI47_04660 0.70 -0.9 981,940 - IAI47_04660 0.70 -0.3 981,985 - IAI47_04660 0.75 +1.9 982,045 + IAI47_04660 0.82 -1.2 982,046 - IAI47_04660 0.82 +0.3 982,049 - IAI47_04660 0.83 +2.6 982,073 - IAI47_04660 0.86 -2.3 982,144 + -1.0 982,145 - -0.9 982,146 + -0.0 982,147 - -0.2 982,150 - -0.0 982,191 + +0.8 982,191 + +0.1 982,191 + +0.9 982,192 - -0.2 982,192 - -0.1 982,192 - +3.7 982,192 - -0.4 982,192 - +0.3 982,195 + -0.3 982,195 + -1.3 982,195 + -0.1 982,196 - -0.6 982,209 + +1.8 982,209 + +0.0 982,211 + -0.5 982,212 - -0.4 982,212 - +1.9 982,212 - +0.2 982,212 - -1.0 982,212 - -0.3 982,212 - -0.9 982,216 + +0.1 982,216 + -1.3 982,217 - -1.3 982,266 + -1.3 982,285 + -0.3 982,305 - +2.6 982,361 + -0.6 982,368 - -0.1 982,369 + -0.8 982,369 + -0.8 982,369 + +2.3 982,370 - -0.8 982,370 - -0.9 982,370 - +0.9 982,378 + +1.7 982,378 + +0.5 982,379 - -1.3 982,400 + +0.1 982,400 + -1.1 982,401 - -0.8 982,405 + +0.1 982,405 + -0.8 982,405 + +0.8 982,406 - -2.2 982,407 + +2.2 982,408 - +1.5 982,408 - +0.1 982,409 + +1.0 982,409 + +0.6 982,409 + +0.2 982,409 + +2.2 982,466 - +0.1 982,498 + -1.4 982,498 + -1.5 982,499 - -1.4 982,610 + +1.5 982,629 + -1.0 982,629 + +0.7 982,705 + -1.7 982,705 + +0.8 982,706 - -1.4 982,821 + -0.7 982,821 + +0.1 982,821 + +3.2 982,821 + +2.2 982,821 + -1.0 982,822 - -0.5 982,822 - +0.1 982,835 - -0.5 982,838 - +0.1 982,838 - -0.8 982,838 - -0.2 982,861 + +2.2 982,861 + +1.6 982,861 + +1.7 982,861 + +0.7 982,861 + +0.1 982,861 + +0.5 982,861 + -1.3 982,862 - -1.9 982,862 - +1.4 982,862 - +1.0 982,862 - -1.0 982,862 - -0.3 982,899 - +2.3 982,903 + +1.2 982,904 - +0.9 982,978 + IAI47_04665 0.14 +0.3 982,979 - IAI47_04665 0.14 +0.6 982,979 - IAI47_04665 0.14 -0.7 983,088 + IAI47_04665 0.24 +0.8 983,089 - IAI47_04665 0.24 +0.7 983,089 - IAI47_04665 0.24 -0.5 983,089 - IAI47_04665 0.24 +0.6 983,089 - IAI47_04665 0.24 +0.2
Or see this region's nucleotide sequence