Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01520 and IAI47_01525 are separated by 145 nucleotides IAI47_01525 and IAI47_01530 are separated by 26 nucleotides IAI47_01530 and IAI47_01535 overlap by 11 nucleotides IAI47_01535 and IAI47_01540 are separated by 232 nucleotides
IAI47_01520: IAI47_01520 - lysoplasmalogenase, at 332,412 to 333,041
_01520
IAI47_01525: IAI47_01525 - DUF2500 domain-containing protein, at 333,187 to 333,543
_01525
IAI47_01530: IAI47_01530 - DUF1145 family protein, at 333,570 to 333,842
_01530
IAI47_01535: IAI47_01535 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 333,832 to 334,431
_01535
IAI47_01540: IAI47_01540 - signal recognition particle-docking protein FtsY, at 334,664 to 336,364
_01540
Position (kb) 333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.885 kb on - strand, within IAI47_01520 at 332.951 kb on + strand, within IAI47_01520 at 332.952 kb on - strand, within IAI47_01520 at 332.952 kb on - strand, within IAI47_01520 at 332.983 kb on + strand at 332.983 kb on + strand at 332.998 kb on + strand at 332.999 kb on - strand at 332.999 kb on - strand at 333.057 kb on + strand at 333.084 kb on + strand at 333.084 kb on + strand at 333.085 kb on - strand at 333.085 kb on - strand at 333.098 kb on + strand at 333.099 kb on - strand at 333.141 kb on + strand at 333.141 kb on + strand at 333.141 kb on + strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.148 kb on + strand at 333.149 kb on - strand at 333.159 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.211 kb on - strand at 333.258 kb on + strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.328 kb on - strand, within IAI47_01525 at 333.328 kb on - strand, within IAI47_01525 at 333.397 kb on + strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.463 kb on + strand, within IAI47_01525 at 333.464 kb on - strand, within IAI47_01525 at 333.519 kb on + strand at 333.519 kb on + strand at 333.520 kb on - strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.746 kb on + strand, within IAI47_01530 at 333.747 kb on - strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.785 kb on + strand, within IAI47_01530 at 333.786 kb on - strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.833 kb on + strand at 333.833 kb on + strand at 333.837 kb on + strand at 333.837 kb on + strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.866 kb on + strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 334.050 kb on + strand, within IAI47_01535 at 334.051 kb on - strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.186 kb on + strand, within IAI47_01535 at 334.191 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.293 kb on + strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.360 kb on - strand, within IAI47_01535 at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.425 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.462 kb on + strand at 334.462 kb on + strand at 334.463 kb on - strand at 334.463 kb on - strand at 334.495 kb on + strand at 334.496 kb on - strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.537 kb on + strand at 334.561 kb on + strand at 334.561 kb on + strand at 334.608 kb on + strand at 334.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 332,884 + IAI47_01520 0.75 +3.2 332,884 + IAI47_01520 0.75 +0.7 332,884 + IAI47_01520 0.75 -0.4 332,884 + IAI47_01520 0.75 -1.1 332,885 - IAI47_01520 0.75 -1.4 332,951 + IAI47_01520 0.86 -1.8 332,952 - IAI47_01520 0.86 -2.1 332,952 - IAI47_01520 0.86 -0.8 332,983 + -0.3 332,983 + +0.4 332,998 + -1.4 332,999 - -0.3 332,999 - +0.1 333,057 + +0.3 333,084 + +1.9 333,084 + +1.3 333,085 - -0.0 333,085 - -0.1 333,098 + +0.5 333,099 - +1.7 333,141 + -2.0 333,141 + +0.2 333,141 + -1.6 333,142 - +1.4 333,142 - -0.9 333,142 - +0.6 333,142 - -0.5 333,142 - +0.0 333,142 - +1.9 333,142 - -1.4 333,142 - -1.7 333,142 - -0.2 333,148 + -0.8 333,149 - +0.4 333,159 + -0.4 333,186 + -0.1 333,186 + -1.6 333,186 + +0.9 333,186 + +1.2 333,187 - -0.9 333,187 - -2.0 333,187 - -1.6 333,187 - -0.3 333,210 + +0.3 333,210 + +3.9 333,210 + +0.1 333,210 + +0.9 333,211 - +1.1 333,258 + IAI47_01525 0.20 +1.3 333,259 - IAI47_01525 0.20 -0.2 333,259 - IAI47_01525 0.20 -0.9 333,259 - IAI47_01525 0.20 -1.4 333,328 - IAI47_01525 0.39 +0.5 333,328 - IAI47_01525 0.39 +0.1 333,397 + IAI47_01525 0.59 +0.3 333,398 - IAI47_01525 0.59 +0.5 333,398 - IAI47_01525 0.59 -1.3 333,398 - IAI47_01525 0.59 +1.6 333,398 - IAI47_01525 0.59 -0.3 333,463 + IAI47_01525 0.77 +2.2 333,464 - IAI47_01525 0.78 -0.6 333,519 + -0.2 333,519 + -0.5 333,520 - -0.1 333,571 + +0.3 333,571 + -0.9 333,571 + -0.8 333,571 + -0.8 333,571 + -1.1 333,571 + +1.7 333,571 + -0.8 333,571 + -0.1 333,571 + -0.3 333,572 - +0.4 333,572 - -0.3 333,572 - -1.0 333,746 + IAI47_01530 0.64 -1.9 333,747 - IAI47_01530 0.65 -1.2 333,751 + IAI47_01530 0.66 -0.6 333,751 + IAI47_01530 0.66 -0.1 333,751 + IAI47_01530 0.66 -2.2 333,751 + IAI47_01530 0.66 -1.1 333,751 + IAI47_01530 0.66 +0.1 333,752 - IAI47_01530 0.67 -0.6 333,752 - IAI47_01530 0.67 -1.0 333,752 - IAI47_01530 0.67 -1.9 333,752 - IAI47_01530 0.67 -1.2 333,752 - IAI47_01530 0.67 +1.4 333,752 - IAI47_01530 0.67 -0.7 333,785 + IAI47_01530 0.79 -1.8 333,786 - IAI47_01530 0.79 +1.8 333,810 + IAI47_01530 0.88 -0.2 333,810 + IAI47_01530 0.88 -1.5 333,810 + IAI47_01530 0.88 +0.8 333,810 + IAI47_01530 0.88 -1.9 333,810 + IAI47_01530 0.88 -1.1 333,810 + IAI47_01530 0.88 -0.8 333,811 - IAI47_01530 0.88 +0.1 333,811 - IAI47_01530 0.88 +0.2 333,811 - IAI47_01530 0.88 +1.6 333,811 - IAI47_01530 0.88 +1.1 333,811 - IAI47_01530 0.88 -1.2 333,833 + +1.6 333,833 + +1.4 333,837 + -2.7 333,837 + +0.8 333,838 - -0.8 333,838 - -0.3 333,838 - -1.6 333,838 - -1.0 333,838 - -1.6 333,838 - +0.1 333,866 + -0.5 333,867 - +1.3 333,867 - -1.5 333,867 - -0.0 333,875 + -0.6 333,875 + -2.0 333,875 + +0.1 333,875 + -1.3 333,875 + -1.4 333,962 + IAI47_01535 0.22 +1.8 333,962 + IAI47_01535 0.22 +1.1 333,962 + IAI47_01535 0.22 -2.7 333,963 - IAI47_01535 0.22 +1.2 333,963 - IAI47_01535 0.22 -0.6 334,050 + IAI47_01535 0.36 -2.3 334,051 - IAI47_01535 0.36 +0.2 334,093 + IAI47_01535 0.43 +0.3 334,093 + IAI47_01535 0.43 -1.0 334,186 + IAI47_01535 0.59 -0.2 334,191 + IAI47_01535 0.60 +2.3 334,228 + IAI47_01535 0.66 -2.5 334,228 + IAI47_01535 0.66 -2.0 334,228 + IAI47_01535 0.66 -0.5 334,229 - IAI47_01535 0.66 -0.4 334,229 - IAI47_01535 0.66 +0.1 334,229 - IAI47_01535 0.66 -0.2 334,229 - IAI47_01535 0.66 -0.2 334,229 - IAI47_01535 0.66 -1.5 334,293 + IAI47_01535 0.77 +3.8 334,294 - IAI47_01535 0.77 -0.7 334,294 - IAI47_01535 0.77 -0.1 334,294 - IAI47_01535 0.77 +0.3 334,359 + IAI47_01535 0.88 -1.9 334,359 + IAI47_01535 0.88 -1.7 334,359 + IAI47_01535 0.88 +1.1 334,360 - IAI47_01535 0.88 -0.7 334,410 + -0.8 334,410 + -0.8 334,410 + -0.8 334,410 + -2.2 334,410 + -0.5 334,425 + -2.1 334,425 + -1.9 334,426 - -2.0 334,451 - -1.1 334,451 - +0.4 334,451 - -0.6 334,462 + -0.7 334,462 + -0.9 334,463 - -1.6 334,463 - -1.0 334,495 + +0.2 334,496 - -2.1 334,532 + -2.4 334,532 + -1.2 334,532 + -0.6 334,537 + +2.7 334,561 + -0.9 334,561 + +0.9 334,608 + +3.0 334,608 + +0.5
Or see this region's nucleotide sequence