Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09000

Experiment: McCas_formate_complete no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete no stress control
1,658,935	+				+0.5
1,659,303	+				-0.3
1,659,329	-				-1.0
1,659,329	-				-0.4
1,659,329	-				-1.0
1,659,334	-				-1.3
1,659,341	-				-0.7
1,659,365	+				-0.9
1,659,378	-				+0.4
1,659,378	-				-1.6
1,659,378	-				-2.0
1,659,378	-				+0.5
1,659,379	+				-1.5
1,659,382	-				+1.0
1,659,382	-				-0.4
1,659,382	-				+0.5
1,659,382	-				-3.7
1,659,382	-				-1.5
1,659,382	-				+0.5
1,659,382	-				-2.3
1,659,382	-				-0.5
1,659,382	-				-0.5
1,659,383	+				-2.3
1,659,383	+				-0.3
1,659,383	+				-1.2
1,659,383	+				-2.5
1,659,383	+				+1.1
1,659,384	-				+0.4
1,659,385	+				-2.7
1,659,394	+				-0.1
1,659,394	+				-1.0
1,659,394	+				-0.5
1,659,394	+				-0.9
1,659,424	-				-2.6
1,659,425	+				-0.6
1,659,522	-				+0.2
1,659,522	-				+0.7
1,659,567	-				+2.4
1,659,568	+				+1.4
1,659,570	-				-2.9
1,659,571	+				-0.1
1,659,571	+				-2.8
1,659,575	+				+0.2
1,659,589	-				-1.0
1,659,589	-				-0.5
1,659,589	-				+0.8
1,659,589	-				+2.7
1,659,589	-				+0.8
1,659,589	-				+0.8
1,659,604	-				+0.9
1,659,604	-				+0.5
1,659,605	+				+0.3
1,659,605	+				+0.2
1,659,605	+				+0.7
1,659,606	-				+0.4
1,659,606	-				-0.3
1,659,606	-				+0.5
1,659,607	+				-0.9
1,659,607	+				+1.1
1,659,608	-				+1.3
1,659,609	+				+0.7
1,659,615	+				+1.6
1,659,654	-				+0.3
1,659,655	+				-2.8
1,659,686	-				-0.4
1,659,687	+				+0.3
1,659,687	+				+0.6
1,659,687	+				+0.4
1,659,687	+				-0.1
1,659,697	-				+0.3
1,659,698	+				+0.4
1,659,698	+				-1.3
1,659,698	+				+0.2
1,659,710	+				+0.9
1,659,710	+				+0.3
1,659,714	-				+0.5
1,659,719	+				+0.1
1,659,723	+				-0.8
1,659,723	+				+2.1
1,659,723	+				-1.1
1,659,725	-				+1.3
1,659,727	-				+1.1
1,659,727	-				+0.3
1,659,728	+				-0.2
1,659,740	-				-0.1
1,659,740	-				-2.3
1,659,752	-				+0.2
1,659,752	-				-0.6
1,659,752	-				+2.1
1,659,753	+				+2.8
1,659,753	+				-1.8
1,659,754	-				+1.4
1,659,754	-				+1.1
1,659,754	-				+0.5
1,659,754	-				+1.6
1,659,754	-				-1.1
1,659,755	+				-1.0
1,659,755	+				-0.2
1,659,755	+				+0.5
1,659,755	+				+0.7
1,659,755	+				+0.4
1,659,764	-				+0.5
1,659,764	-				+0.8
1,659,764	-				+1.1
1,659,764	-				-0.2
1,659,765	+				+2.1
1,659,765	+				-0.9
1,659,765	+				+1.4
1,659,766	-				+0.8
1,659,766	-				+0.3
1,659,766	-				+3.1
1,659,767	+				-0.8
1,659,767	+				-0.2
1,659,767	+				+0.3
1,659,767	+				+2.1
1,659,773	+				+0.5
1,659,804	-		MMJJ_RS09000	0.10	-1.8
1,659,805	+		MMJJ_RS09000	0.10	-1.6
1,659,805	+		MMJJ_RS09000	0.10	+0.6
1,659,808	+		MMJJ_RS09000	0.11	+1.6
1,659,808	+		MMJJ_RS09000	0.11	-0.3
1,659,808	+		MMJJ_RS09000	0.11	-1.5
1,659,808	+		MMJJ_RS09000	0.11	-0.2
1,659,837	+		MMJJ_RS09000	0.14	-0.1
1,659,844	-		MMJJ_RS09000	0.14	-0.2
1,659,844	-		MMJJ_RS09000	0.14	+1.1
1,659,845	+		MMJJ_RS09000	0.14	+0.3
1,659,845	+		MMJJ_RS09000	0.14	-0.6
1,659,845	+		MMJJ_RS09000	0.14	+0.5
1,659,845	+		MMJJ_RS09000	0.14	+0.4
1,659,845	+		MMJJ_RS09000	0.14	+0.1
1,659,845	+		MMJJ_RS09000	0.14	+0.2
1,659,845	+		MMJJ_RS09000	0.14	+0.7
1,659,850	-		MMJJ_RS09000	0.15	+0.5
1,659,851	+		MMJJ_RS09000	0.15	-1.0
1,659,851	+		MMJJ_RS09000	0.15	+0.5
1,659,854	-		MMJJ_RS09000	0.15	+1.3
1,659,855	+		MMJJ_RS09000	0.15	+3.3
1,659,856	-		MMJJ_RS09000	0.15	-0.1
1,659,884	-		MMJJ_RS09000	0.18	-0.1
1,659,884	-		MMJJ_RS09000	0.18	-1.5
1,659,885	+		MMJJ_RS09000	0.18	+1.0
1,659,885	+		MMJJ_RS09000	0.18	-0.5
1,659,885	+		MMJJ_RS09000	0.18	+0.1
1,659,888	-		MMJJ_RS09000	0.18	+2.1
1,659,889	+		MMJJ_RS09000	0.18	+0.0
1,659,890	-		MMJJ_RS09000	0.19	+0.8
1,659,890	-		MMJJ_RS09000	0.19	+1.2
1,659,891	+		MMJJ_RS09000	0.19	+1.2
1,659,895	-		MMJJ_RS09000	0.19	+0.1
1,659,896	+		MMJJ_RS09000	0.19	+0.5
1,659,905	-		MMJJ_RS09000	0.20	+1.5
1,659,906	+		MMJJ_RS09000	0.20	+1.1
1,659,928	+		MMJJ_RS09000	0.22	+1.6
1,659,935	-		MMJJ_RS09000	0.23	+0.4
1,659,939	-		MMJJ_RS09000	0.23	-0.1
1,660,000	+		MMJJ_RS09000	0.29	+0.4
1,660,000	+		MMJJ_RS09000	0.29	+0.5
1,660,000	+		MMJJ_RS09000	0.29	+0.1
1,660,008	-		MMJJ_RS09000	0.30	+0.5
1,660,008	-		MMJJ_RS09000	0.30	+1.6
1,660,009	+		MMJJ_RS09000	0.30	-0.5
1,660,009	+		MMJJ_RS09000	0.30	+0.8
1,660,037	-		MMJJ_RS09000	0.33	+0.3
1,660,047	-		MMJJ_RS09000	0.34	+3.0
1,660,047	-		MMJJ_RS09000	0.34	+1.2
1,660,048	+		MMJJ_RS09000	0.34	+0.7
1,660,048	+		MMJJ_RS09000	0.34	+2.3
1,660,049	-		MMJJ_RS09000	0.34	-0.3
1,660,067	-		MMJJ_RS09000	0.36	+0.5
1,660,068	+		MMJJ_RS09000	0.36	+0.7
1,660,088	-		MMJJ_RS09000	0.38	+0.1
1,660,088	-		MMJJ_RS09000	0.38	-1.0
1,660,088	-		MMJJ_RS09000	0.38	+0.2
1,660,089	+		MMJJ_RS09000	0.38	+1.3
1,660,089	+		MMJJ_RS09000	0.38	-0.5
1,660,089	+		MMJJ_RS09000	0.38	-1.3
1,660,089	+		MMJJ_RS09000	0.38	-0.9
1,660,090	-		MMJJ_RS09000	0.38	-0.3
1,660,091	+		MMJJ_RS09000	0.38	-1.8
1,660,121	-		MMJJ_RS09000	0.41	-0.3
1,660,121	-		MMJJ_RS09000	0.41	+1.2
1,660,168	+		MMJJ_RS09000	0.45	+1.0
1,660,168	+		MMJJ_RS09000	0.45	+0.5
1,660,215	+		MMJJ_RS09000	0.50	+0.5
1,660,216	-		MMJJ_RS09000	0.50	-1.8
1,660,216	-		MMJJ_RS09000	0.50	+0.9
1,660,216	-		MMJJ_RS09000	0.50	-2.8
1,660,216	-		MMJJ_RS09000	0.50	+0.2
1,660,216	-		MMJJ_RS09000	0.50	-0.1
1,660,216	-		MMJJ_RS09000	0.50	-2.7
1,660,217	+		MMJJ_RS09000	0.50	+1.2
1,660,217	+		MMJJ_RS09000	0.50	+2.0
1,660,222	+		MMJJ_RS09000	0.50	-0.8
1,660,222	+		MMJJ_RS09000	0.50	+2.6
1,660,243	+		MMJJ_RS09000	0.52	+0.9
1,660,253	-		MMJJ_RS09000	0.53	+0.5
1,660,253	-		MMJJ_RS09000	0.53	+0.1
1,660,254	+		MMJJ_RS09000	0.53	+0.8
1,660,254	+		MMJJ_RS09000	0.53	+1.8
1,660,254	+		MMJJ_RS09000	0.53	-0.6
1,660,256	+		MMJJ_RS09000	0.54	-0.3
1,660,291	-		MMJJ_RS09000	0.57	+0.3
1,660,291	-		MMJJ_RS09000	0.57	+0.4
1,660,362	+		MMJJ_RS09000	0.64	+3.3
1,660,399	-		MMJJ_RS09000	0.67	+2.5
1,660,400	+		MMJJ_RS09000	0.67	+0.5
1,660,403	-		MMJJ_RS09000	0.68	-0.6
1,660,433	-		MMJJ_RS09000	0.71	-0.6
1,660,434	+		MMJJ_RS09000	0.71	+0.4
1,660,467	-		MMJJ_RS09000	0.74	+0.1
1,660,467	-		MMJJ_RS09000	0.74	-0.0
1,660,467	-		MMJJ_RS09000	0.74	-0.5
1,660,467	-		MMJJ_RS09000	0.74	+0.0
1,660,477	-		MMJJ_RS09000	0.75	+1.9
1,660,478	+		MMJJ_RS09000	0.75	-1.9
1,660,478	+		MMJJ_RS09000	0.75	-0.4
1,660,478	+		MMJJ_RS09000	0.75	+0.7
1,660,478	+		MMJJ_RS09000	0.75	-0.3
1,660,481	-		MMJJ_RS09000	0.75	-0.5
1,660,482	+		MMJJ_RS09000	0.75	+2.1
1,660,503	+		MMJJ_RS09000	0.77	+1.3
1,660,503	+		MMJJ_RS09000	0.77	+1.2
1,660,503	+		MMJJ_RS09000	0.77	-0.3
1,660,514	+		MMJJ_RS09000	0.78	+1.5
1,660,532	-		MMJJ_RS09000	0.80	-1.4
1,660,533	+				-1.5
1,660,533	+		MMJJ_RS09000	0.80	-1.0
1,660,533	+		MMJJ_RS09000	0.80	-0.7
1,660,533	+		MMJJ_RS09000	0.80	-0.9
1,660,533	+		MMJJ_RS09000	0.80	-0.0
1,660,536	-		MMJJ_RS09000	0.80	+0.8
1,660,537	+		MMJJ_RS09000	0.81	+1.4
1,660,562	-		MMJJ_RS09000	0.83	+1.4
1,660,581	+		MMJJ_RS09000	0.85	+1.7
1,660,601	-		MMJJ_RS09000	0.87	+0.7
1,660,744	+				+2.7
1,660,777	-				+1.5
1,660,812	+				+2.2
1,660,832	-				+1.7
1,660,833	+				+0.3
1,660,837	+				-1.2
1,660,894	+				+0.3
1,660,918	-				+0.2
1,660,926	+				+0.5
1,660,967	+		MMJJ_RS09005	0.12	+0.5
1,660,967	+		MMJJ_RS09005	0.12	-0.8
1,660,976	-		MMJJ_RS09005	0.12	-0.4
1,660,976	-		MMJJ_RS09005	0.12	-1.0
1,660,977	+		MMJJ_RS09005	0.12	-0.7
1,661,030	-		MMJJ_RS09005	0.15	+0.2
1,661,031	+		MMJJ_RS09005	0.15	+0.3
1,661,031	+		MMJJ_RS09005	0.15	+0.9
1,661,031	+		MMJJ_RS09005	0.15	-0.5
1,661,048	+		MMJJ_RS09005	0.16	-0.5
1,661,048	+		MMJJ_RS09005	0.16	+0.8
1,661,113	-		MMJJ_RS09005	0.19	+2.0
1,661,117	-		MMJJ_RS09005	0.19	+0.6
1,661,148	-		MMJJ_RS09005	0.21	-0.7
1,661,174	-		MMJJ_RS09005	0.22	+1.7
1,661,184	+		MMJJ_RS09005	0.23	-1.2
1,661,230	-		MMJJ_RS09005	0.25	-0.3
1,661,319	+		MMJJ_RS09005	0.30	-0.2
1,661,328	+		MMJJ_RS09005	0.30	+0.8
1,661,393	-		MMJJ_RS09005	0.34	+1.4
1,661,405	+		MMJJ_RS09005	0.34	-2.6
1,661,435	-		MMJJ_RS09005	0.36	-0.7
1,661,450	+		MMJJ_RS09005	0.37	+0.2
1,661,488	-		MMJJ_RS09005	0.39	-0.5
1,661,496	-		MMJJ_RS09005	0.39	-1.5
1,661,497	+		MMJJ_RS09005	0.39	+1.3
1,661,571	+		MMJJ_RS09005	0.43	+1.1
1,661,579	+		MMJJ_RS09005	0.43	-1.0
1,661,579	+		MMJJ_RS09005	0.43	-1.8
1,661,632	-		MMJJ_RS09005	0.46	-2.3
1,661,632	-		MMJJ_RS09005	0.46	-0.8
1,661,639	+		MMJJ_RS09005	0.46	+0.7
1,661,639	+		MMJJ_RS09005	0.46	-0.8
1,661,646	+		MMJJ_RS09005	0.47	+1.0
1,661,698	-		MMJJ_RS09005	0.49	-1.0
1,661,699	+		MMJJ_RS09005	0.49	+3.0
1,661,699	+		MMJJ_RS09005	0.49	+0.8
1,661,702	-		MMJJ_RS09005	0.50	+0.4
1,661,703	+		MMJJ_RS09005	0.50	+1.3
1,661,703	+		MMJJ_RS09005	0.50	+1.7