Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06415

Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06405 and MMJJ_RS06410 are separated by 38 nucleotidesMMJJ_RS06410 and MMJJ_RS06415 are separated by 40 nucleotidesMMJJ_RS06415 and MMJJ_RS06420 are separated by 21 nucleotidesMMJJ_RS06420 and MMJJ_RS06425 are separated by 30 nucleotides MMJJ_RS06405: MMJJ_RS06405 - 30S ribosomal protein S19, at 1,185,508 to 1,185,993 _RS06405 MMJJ_RS06410: MMJJ_RS06410 - 50S ribosomal protein L2, at 1,186,032 to 1,186,754 _RS06410 MMJJ_RS06415: MMJJ_RS06415 - 50S ribosomal protein L23, at 1,186,795 to 1,187,055 _RS06415 MMJJ_RS06420: MMJJ_RS06420 - 50S ribosomal protein L4, at 1,187,077 to 1,187,835 _RS06420 MMJJ_RS06425: MMJJ_RS06425 - 50S ribosomal protein L3, at 1,187,866 to 1,188,870 _RS06425 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -1 0 1at 1186.426 kb on - strand, within MMJJ_RS06410at 1187.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
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1,186,426 - MMJJ_RS06410 0.54 +1.3
1,187,500 - +1.3

Or see this region's nucleotide sequence