Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06410

Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06400 and MMJJ_RS06405 are separated by 85 nucleotidesMMJJ_RS06405 and MMJJ_RS06410 are separated by 38 nucleotidesMMJJ_RS06410 and MMJJ_RS06415 are separated by 40 nucleotidesMMJJ_RS06415 and MMJJ_RS06420 are separated by 21 nucleotides MMJJ_RS06400: MMJJ_RS06400 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,184,850 to 1,185,422 _RS06400 MMJJ_RS06405: MMJJ_RS06405 - 30S ribosomal protein S19, at 1,185,508 to 1,185,993 _RS06405 MMJJ_RS06410: MMJJ_RS06410 - 50S ribosomal protein L2, at 1,186,032 to 1,186,754 _RS06410 MMJJ_RS06415: MMJJ_RS06415 - 50S ribosomal protein L23, at 1,186,795 to 1,187,055 _RS06415 MMJJ_RS06420: MMJJ_RS06420 - 50S ribosomal protein L4, at 1,187,077 to 1,187,835 _RS06420 Position (kb) 1186 1187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.194 kb on + strand, within MMJJ_RS06400at 1185.198 kb on - strand, within MMJJ_RS06400at 1185.361 kb on - strand, within MMJJ_RS06400at 1185.361 kb on - strand, within MMJJ_RS06400at 1185.362 kb on + strand, within MMJJ_RS06400at 1185.363 kb on - strand, within MMJJ_RS06400at 1185.363 kb on - strand, within MMJJ_RS06400at 1185.364 kb on + strand, within MMJJ_RS06400at 1185.368 kb on - strandat 1185.369 kb on + strandat 1185.369 kb on + strandat 1185.404 kb on - strandat 1186.426 kb on - strand, within MMJJ_RS06410at 1187.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
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1,185,194 + MMJJ_RS06400 0.60 +1.3
1,185,198 - MMJJ_RS06400 0.61 +1.6
1,185,361 - MMJJ_RS06400 0.89 -0.0
1,185,361 - MMJJ_RS06400 0.89 +0.1
1,185,362 + MMJJ_RS06400 0.89 +2.0
1,185,363 - MMJJ_RS06400 0.90 +0.8
1,185,363 - MMJJ_RS06400 0.90 -3.0
1,185,364 + MMJJ_RS06400 0.90 +0.6
1,185,368 - -1.9
1,185,369 + -0.8
1,185,369 + -0.9
1,185,404 - +1.3
1,186,426 - MMJJ_RS06410 0.54 +1.3
1,187,500 - +1.3

Or see this region's nucleotide sequence