Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05110 and MMJJ_RS05115 are separated by 26 nucleotides MMJJ_RS05115 and MMJJ_RS05120 are separated by 391 nucleotides
MMJJ_RS05110: MMJJ_RS05110 - ammonium transporter, at 947,316 to 948,542
_RS05110
MMJJ_RS05115: MMJJ_RS05115 - P-II family nitrogen regulator, at 948,569 to 948,907
_RS05115
MMJJ_RS05120: MMJJ_RS05120 - acetylglutamate kinase, at 949,299 to 950,183
_RS05120
Position (kb) 948
949 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 947.580 kb on - strand, within MMJJ_RS05110 at 947.580 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.589 kb on - strand, within MMJJ_RS05110 at 947.590 kb on + strand, within MMJJ_RS05110 at 947.590 kb on + strand, within MMJJ_RS05110 at 947.664 kb on - strand, within MMJJ_RS05110 at 947.664 kb on - strand, within MMJJ_RS05110 at 947.664 kb on - strand, within MMJJ_RS05110 at 947.664 kb on - strand, within MMJJ_RS05110 at 947.665 kb on + strand, within MMJJ_RS05110 at 947.683 kb on + strand, within MMJJ_RS05110 at 947.713 kb on + strand, within MMJJ_RS05110 at 947.743 kb on + strand, within MMJJ_RS05110 at 947.745 kb on - strand, within MMJJ_RS05110 at 947.745 kb on - strand, within MMJJ_RS05110 at 947.746 kb on + strand, within MMJJ_RS05110 at 947.746 kb on + strand, within MMJJ_RS05110 at 947.814 kb on - strand, within MMJJ_RS05110 at 947.814 kb on - strand, within MMJJ_RS05110 at 947.814 kb on - strand, within MMJJ_RS05110 at 947.815 kb on + strand, within MMJJ_RS05110 at 947.815 kb on + strand, within MMJJ_RS05110 at 947.815 kb on + strand, within MMJJ_RS05110 at 947.815 kb on + strand, within MMJJ_RS05110 at 947.817 kb on - strand, within MMJJ_RS05110 at 947.818 kb on + strand, within MMJJ_RS05110 at 947.818 kb on + strand, within MMJJ_RS05110 at 947.829 kb on + strand, within MMJJ_RS05110 at 947.829 kb on + strand, within MMJJ_RS05110 at 947.854 kb on + strand, within MMJJ_RS05110 at 947.858 kb on - strand, within MMJJ_RS05110 at 947.858 kb on - strand, within MMJJ_RS05110 at 947.859 kb on + strand, within MMJJ_RS05110 at 947.898 kb on - strand, within MMJJ_RS05110 at 947.963 kb on - strand, within MMJJ_RS05110 at 947.964 kb on + strand, within MMJJ_RS05110 at 947.995 kb on + strand, within MMJJ_RS05110 at 948.006 kb on - strand, within MMJJ_RS05110 at 948.007 kb on + strand, within MMJJ_RS05110 at 948.007 kb on + strand, within MMJJ_RS05110 at 948.015 kb on - strand, within MMJJ_RS05110 at 948.016 kb on + strand, within MMJJ_RS05110 at 948.034 kb on - strand, within MMJJ_RS05110 at 948.076 kb on - strand, within MMJJ_RS05110 at 948.092 kb on + strand, within MMJJ_RS05110 at 948.093 kb on - strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.094 kb on + strand, within MMJJ_RS05110 at 948.105 kb on - strand, within MMJJ_RS05110 at 948.106 kb on + strand, within MMJJ_RS05110 at 948.120 kb on - strand, within MMJJ_RS05110 at 948.120 kb on - strand, within MMJJ_RS05110 at 948.120 kb on - strand, within MMJJ_RS05110 at 948.123 kb on - strand, within MMJJ_RS05110 at 948.123 kb on - strand, within MMJJ_RS05110 at 948.123 kb on - strand, within MMJJ_RS05110 at 948.123 kb on - strand, within MMJJ_RS05110 at 948.123 kb on - strand, within MMJJ_RS05110 at 948.124 kb on + strand, within MMJJ_RS05110 at 948.124 kb on + strand, within MMJJ_RS05110 at 948.124 kb on + strand, within MMJJ_RS05110 at 948.124 kb on + strand, within MMJJ_RS05110 at 948.127 kb on - strand, within MMJJ_RS05110 at 948.127 kb on - strand, within MMJJ_RS05110 at 948.134 kb on - strand, within MMJJ_RS05110 at 948.230 kb on - strand, within MMJJ_RS05110 at 948.252 kb on - strand, within MMJJ_RS05110 at 948.312 kb on - strand, within MMJJ_RS05110 at 948.312 kb on - strand, within MMJJ_RS05110 at 948.366 kb on - strand, within MMJJ_RS05110 at 948.367 kb on + strand, within MMJJ_RS05110 at 948.374 kb on - strand, within MMJJ_RS05110 at 948.420 kb on - strand at 948.441 kb on - strand at 948.441 kb on - strand at 948.442 kb on + strand at 948.442 kb on + strand at 948.442 kb on + strand at 948.451 kb on + strand at 948.451 kb on + strand at 948.451 kb on + strand at 948.454 kb on + strand at 948.454 kb on + strand at 948.454 kb on + strand at 948.454 kb on + strand at 948.456 kb on - strand at 948.456 kb on - strand at 948.456 kb on - strand at 948.457 kb on + strand at 948.457 kb on + strand at 948.457 kb on + strand at 948.457 kb on + strand at 948.465 kb on - strand at 948.465 kb on - strand at 948.465 kb on - strand at 948.465 kb on - strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.488 kb on - strand at 948.489 kb on + strand at 948.489 kb on + strand at 948.525 kb on - strand at 948.525 kb on - strand at 948.570 kb on - strand at 948.582 kb on + strand at 948.628 kb on - strand, within MMJJ_RS05115 at 948.632 kb on + strand, within MMJJ_RS05115 at 948.689 kb on - strand, within MMJJ_RS05115 at 948.752 kb on - strand, within MMJJ_RS05115 at 948.756 kb on - strand, within MMJJ_RS05115 at 948.757 kb on + strand, within MMJJ_RS05115 at 948.782 kb on - strand, within MMJJ_RS05115 at 948.782 kb on - strand, within MMJJ_RS05115 at 948.854 kb on + strand, within MMJJ_RS05115 at 948.861 kb on + strand, within MMJJ_RS05115 at 948.879 kb on + strand at 948.879 kb on + strand at 948.887 kb on - strand at 948.889 kb on - strand at 948.889 kb on - strand at 948.889 kb on - strand at 948.889 kb on - strand at 948.890 kb on + strand at 948.890 kb on + strand at 948.909 kb on - strand at 948.909 kb on - strand at 948.990 kb on - strand at 948.991 kb on + strand at 948.993 kb on + strand at 949.002 kb on + strand at 949.005 kb on + strand at 949.011 kb on - strand at 949.012 kb on + strand at 949.012 kb on + strand at 949.021 kb on - strand at 949.022 kb on + strand at 949.022 kb on + strand at 949.022 kb on + strand at 949.022 kb on + strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.023 kb on - strand at 949.024 kb on + strand at 949.024 kb on + strand at 949.024 kb on + strand at 949.024 kb on + strand at 949.024 kb on + strand at 949.026 kb on - strand at 949.027 kb on + strand at 949.027 kb on + strand at 949.027 kb on + strand at 949.031 kb on - strand at 949.107 kb on + strand at 949.161 kb on - strand at 949.161 kb on - strand at 949.162 kb on + strand at 949.162 kb on + strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.165 kb on - strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.166 kb on + strand at 949.171 kb on - strand at 949.171 kb on - strand at 949.171 kb on - strand at 949.171 kb on - strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.172 kb on + strand at 949.179 kb on + strand at 949.179 kb on + strand at 949.179 kb on + strand at 949.181 kb on + strand at 949.182 kb on - strand at 949.188 kb on - strand at 949.189 kb on + strand at 949.189 kb on + strand at 949.243 kb on - strand at 949.257 kb on + strand at 949.524 kb on - strand, within MMJJ_RS05120 at 949.525 kb on + strand, within MMJJ_RS05120 at 949.690 kb on + strand, within MMJJ_RS05120
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 947,580 - MMJJ_RS05110 0.22 +2.0 947,580 - MMJJ_RS05110 0.22 -2.5 947,589 - MMJJ_RS05110 0.22 +3.4 947,589 - MMJJ_RS05110 0.22 +1.1 947,589 - MMJJ_RS05110 0.22 -0.5 947,589 - MMJJ_RS05110 0.22 +0.5 947,589 - MMJJ_RS05110 0.22 +2.4 947,589 - MMJJ_RS05110 0.22 +0.2 947,589 - MMJJ_RS05110 0.22 +2.5 947,589 - MMJJ_RS05110 0.22 -2.5 947,590 + MMJJ_RS05110 0.22 +1.8 947,590 + MMJJ_RS05110 0.22 -0.5 947,664 - MMJJ_RS05110 0.28 +2.0 947,664 - MMJJ_RS05110 0.28 -0.5 947,664 - MMJJ_RS05110 0.28 -2.1 947,664 - MMJJ_RS05110 0.28 +0.4 947,665 + MMJJ_RS05110 0.28 -0.3 947,683 + MMJJ_RS05110 0.30 -0.9 947,713 + MMJJ_RS05110 0.32 +2.1 947,743 + MMJJ_RS05110 0.35 +1.5 947,745 - MMJJ_RS05110 0.35 +1.2 947,745 - MMJJ_RS05110 0.35 -3.0 947,746 + MMJJ_RS05110 0.35 +0.3 947,746 + MMJJ_RS05110 0.35 -2.1 947,814 - MMJJ_RS05110 0.41 -2.3 947,814 - MMJJ_RS05110 0.41 -3.0 947,814 - MMJJ_RS05110 0.41 -1.1 947,815 + MMJJ_RS05110 0.41 +1.5 947,815 + MMJJ_RS05110 0.41 +0.6 947,815 + MMJJ_RS05110 0.41 +0.4 947,815 + MMJJ_RS05110 0.41 +0.9 947,817 - MMJJ_RS05110 0.41 +3.3 947,818 + MMJJ_RS05110 0.41 -1.2 947,818 + MMJJ_RS05110 0.41 +0.9 947,829 + MMJJ_RS05110 0.42 +0.2 947,829 + MMJJ_RS05110 0.42 +1.8 947,854 + MMJJ_RS05110 0.44 -1.4 947,858 - MMJJ_RS05110 0.44 -0.3 947,858 - MMJJ_RS05110 0.44 +0.8 947,859 + MMJJ_RS05110 0.44 -1.1 947,898 - MMJJ_RS05110 0.47 +1.5 947,963 - MMJJ_RS05110 0.53 +1.6 947,964 + MMJJ_RS05110 0.53 +1.6 947,995 + MMJJ_RS05110 0.55 +1.0 948,006 - MMJJ_RS05110 0.56 -1.5 948,007 + MMJJ_RS05110 0.56 +1.2 948,007 + MMJJ_RS05110 0.56 -0.1 948,015 - MMJJ_RS05110 0.57 -1.3 948,016 + MMJJ_RS05110 0.57 -2.8 948,034 - MMJJ_RS05110 0.59 -2.1 948,076 - MMJJ_RS05110 0.62 -2.8 948,092 + MMJJ_RS05110 0.63 +0.6 948,093 - MMJJ_RS05110 0.63 -1.2 948,094 + MMJJ_RS05110 0.63 +2.9 948,094 + MMJJ_RS05110 0.63 +1.5 948,094 + MMJJ_RS05110 0.63 -3.1 948,094 + MMJJ_RS05110 0.63 -2.3 948,094 + MMJJ_RS05110 0.63 -2.2 948,094 + MMJJ_RS05110 0.63 -0.1 948,094 + MMJJ_RS05110 0.63 +1.8 948,105 - MMJJ_RS05110 0.64 -0.6 948,106 + MMJJ_RS05110 0.64 +0.5 948,120 - MMJJ_RS05110 0.66 +1.5 948,120 - MMJJ_RS05110 0.66 +1.1 948,120 - MMJJ_RS05110 0.66 +0.7 948,123 - MMJJ_RS05110 0.66 +1.7 948,123 - MMJJ_RS05110 0.66 -0.5 948,123 - MMJJ_RS05110 0.66 +6.6 948,123 - MMJJ_RS05110 0.66 +1.5 948,123 - MMJJ_RS05110 0.66 -0.8 948,124 + MMJJ_RS05110 0.66 +0.2 948,124 + MMJJ_RS05110 0.66 +2.9 948,124 + MMJJ_RS05110 0.66 +0.0 948,124 + MMJJ_RS05110 0.66 +0.5 948,127 - MMJJ_RS05110 0.66 -0.0 948,127 - MMJJ_RS05110 0.66 -1.8 948,134 - MMJJ_RS05110 0.67 +0.1 948,230 - MMJJ_RS05110 0.74 -2.7 948,252 - MMJJ_RS05110 0.76 +2.2 948,312 - MMJJ_RS05110 0.81 +0.6 948,312 - MMJJ_RS05110 0.81 -4.0 948,366 - MMJJ_RS05110 0.86 +0.4 948,367 + MMJJ_RS05110 0.86 -3.6 948,374 - MMJJ_RS05110 0.86 +2.7 948,420 - -3.1 948,441 - +0.9 948,441 - -0.0 948,442 + -3.5 948,442 + -3.9 948,442 + +0.4 948,451 + -0.6 948,451 + +0.2 948,451 + -1.1 948,454 + -0.8 948,454 + +3.5 948,454 + +1.9 948,454 + +0.2 948,456 - -0.9 948,456 - -1.9 948,456 - -2.5 948,457 + -1.9 948,457 + -0.7 948,457 + -1.8 948,457 + -1.0 948,465 - -0.2 948,465 - +1.0 948,465 - +2.0 948,465 - -2.3 948,466 + -2.6 948,466 + -0.0 948,466 + -0.3 948,466 + -0.6 948,466 + -0.0 948,466 + +0.7 948,488 - +1.8 948,489 + -2.3 948,489 + +1.3 948,525 - +0.3 948,525 - +0.7 948,570 - -3.5 948,582 + +1.7 948,628 - MMJJ_RS05115 0.17 -3.2 948,632 + MMJJ_RS05115 0.19 +0.0 948,689 - MMJJ_RS05115 0.35 -0.6 948,752 - MMJJ_RS05115 0.54 +0.7 948,756 - MMJJ_RS05115 0.55 +0.9 948,757 + MMJJ_RS05115 0.55 +1.9 948,782 - MMJJ_RS05115 0.63 -0.8 948,782 - MMJJ_RS05115 0.63 -1.6 948,854 + MMJJ_RS05115 0.84 +1.2 948,861 + MMJJ_RS05115 0.86 +0.6 948,879 + +1.7 948,879 + +1.5 948,887 - +1.1 948,889 - -0.2 948,889 - -0.2 948,889 - -3.5 948,889 - -0.4 948,890 + +1.3 948,890 + +0.5 948,909 - -0.4 948,909 - +1.4 948,990 - +1.6 948,991 + +0.4 948,993 + +1.4 949,002 + +0.8 949,005 + +1.5 949,011 - +0.8 949,012 + -1.1 949,012 + +2.6 949,021 - -0.3 949,022 + -1.6 949,022 + +1.8 949,022 + +1.3 949,022 + +0.3 949,023 - -1.1 949,023 - +3.1 949,023 - -4.0 949,023 - -0.3 949,023 - +1.1 949,023 - +1.8 949,023 - -3.2 949,023 - +0.2 949,024 + +0.2 949,024 + +0.2 949,024 + -0.2 949,024 + -1.3 949,024 + -0.3 949,026 - -1.1 949,027 + -0.9 949,027 + -0.1 949,027 + +1.4 949,031 - +3.0 949,107 + +1.2 949,161 - -0.8 949,161 - +0.1 949,162 + -3.3 949,162 + +2.9 949,165 - +1.6 949,165 - +2.3 949,165 - -0.8 949,165 - -2.1 949,165 - +0.3 949,165 - -2.7 949,165 - +1.2 949,165 - +0.7 949,165 - -1.1 949,166 + -1.4 949,166 + -0.2 949,166 + +0.7 949,166 + +2.0 949,166 + +2.5 949,166 + +2.4 949,166 + +0.8 949,166 + +1.4 949,171 - +0.4 949,171 - +0.5 949,171 - -1.4 949,171 - -0.5 949,172 + -2.8 949,172 + -0.0 949,172 + +1.4 949,172 + +2.7 949,172 + -1.8 949,172 + -0.0 949,172 + -1.9 949,172 + +1.1 949,172 + +1.2 949,172 + -1.1 949,172 + -0.8 949,172 + -1.6 949,172 + +0.1 949,179 + -2.8 949,179 + -2.8 949,179 + -0.3 949,181 + +0.9 949,182 - -0.3 949,188 - +1.4 949,189 + +1.7 949,189 + -3.5 949,243 - +0.2 949,257 + -1.3 949,524 - MMJJ_RS05120 0.25 -0.3 949,525 + MMJJ_RS05120 0.26 +1.2 949,690 + MMJJ_RS05120 0.44 -0.6
Or see this region's nucleotide sequence