Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04610

Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04600 and MMJJ_RS04605 are separated by 25 nucleotidesMMJJ_RS04605 and MMJJ_RS04610 are separated by 229 nucleotidesMMJJ_RS04610 and MMJJ_RS04615 are separated by 236 nucleotides MMJJ_RS04600: MMJJ_RS04600 - DNA-binding protein, at 857,323 to 857,682 _RS04600 MMJJ_RS04605: MMJJ_RS04605 - 30S ribosomal protein S19e, at 857,708 to 858,133 _RS04605 MMJJ_RS04610: MMJJ_RS04610 - ribosome assembly RNA-binding protein YhbY, at 858,363 to 858,746 _RS04610 MMJJ_RS04615: MMJJ_RS04615 - methanogenesis marker 3 protein, at 858,983 to 860,488 _RS04615 Position (kb) 858 859Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 857.450 kb on + strand, within MMJJ_RS04600at 857.665 kb on - strandat 857.709 kb on - strandat 857.709 kb on - strandat 857.710 kb on + strandat 857.710 kb on + strandat 857.729 kb on - strandat 857.729 kb on - strandat 858.136 kb on + strandat 858.260 kb on - strandat 858.276 kb on + strandat 858.299 kb on - strandat 858.300 kb on + strandat 858.303 kb on + strandat 858.304 kb on - strandat 858.305 kb on + strandat 858.362 kb on + strandat 858.415 kb on - strand, within MMJJ_RS04610at 858.593 kb on - strand, within MMJJ_RS04610at 858.602 kb on - strand, within MMJJ_RS04610at 858.603 kb on + strand, within MMJJ_RS04610at 858.610 kb on + strand, within MMJJ_RS04610at 858.631 kb on + strand, within MMJJ_RS04610at 858.631 kb on + strand, within MMJJ_RS04610at 858.696 kb on - strand, within MMJJ_RS04610at 858.697 kb on + strand, within MMJJ_RS04610at 858.697 kb on + strand, within MMJJ_RS04610at 858.700 kb on + strand, within MMJJ_RS04610at 858.707 kb on - strand, within MMJJ_RS04610at 858.720 kb on - strandat 858.726 kb on - strandat 858.746 kb on - strandat 858.762 kb on - strandat 858.763 kb on + strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.766 kb on - strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.772 kb on - strandat 858.773 kb on + strandat 858.773 kb on + strandat 858.774 kb on - strandat 858.775 kb on + strandat 858.775 kb on + strandat 858.783 kb on + strandat 858.793 kb on + strandat 858.793 kb on + strandat 858.805 kb on + strandat 858.827 kb on + strandat 858.827 kb on + strandat 858.833 kb on - strandat 858.838 kb on - strandat 858.838 kb on - strandat 858.839 kb on + strandat 858.855 kb on - strandat 858.856 kb on + strandat 858.860 kb on + strandat 858.860 kb on + strandat 858.864 kb on - strandat 858.869 kb on - strandat 858.869 kb on - strandat 858.869 kb on - strandat 858.870 kb on + strandat 858.870 kb on + strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.871 kb on - strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.872 kb on + strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.873 kb on - strandat 858.874 kb on + strandat 858.874 kb on + strandat 858.874 kb on + strandat 858.874 kb on + strandat 858.875 kb on - strandat 858.875 kb on - strandat 858.875 kb on - strandat 858.875 kb on - strandat 858.875 kb on - strandat 858.876 kb on + strandat 858.876 kb on + strandat 858.876 kb on + strandat 858.876 kb on + strandat 858.880 kb on - strandat 858.880 kb on - strandat 858.881 kb on + strandat 858.881 kb on + strandat 858.881 kb on + strandat 858.881 kb on + strandat 858.886 kb on - strandat 858.887 kb on + strandat 858.894 kb on - strandat 858.894 kb on - strandat 858.894 kb on - strandat 858.895 kb on + strandat 858.895 kb on + strandat 858.895 kb on + strandat 858.895 kb on + strandat 858.897 kb on - strandat 858.898 kb on + strandat 858.898 kb on + strandat 858.898 kb on + strandat 858.898 kb on + strandat 858.898 kb on + strandat 858.903 kb on - strandat 858.904 kb on + strandat 858.904 kb on + strandat 858.907 kb on - strandat 858.907 kb on - strandat 858.908 kb on + strandat 858.908 kb on + strandat 858.911 kb on - strandat 858.911 kb on - strandat 858.912 kb on + strandat 858.913 kb on - strandat 858.914 kb on + strandat 858.914 kb on + strandat 858.918 kb on + strandat 858.918 kb on + strandat 858.919 kb on - strandat 858.919 kb on - strandat 858.955 kb on - strandat 858.955 kb on - strandat 858.956 kb on + strandat 858.991 kb on + strandat 859.036 kb on + strandat 859.074 kb on - strandat 859.074 kb on - strandat 859.099 kb on + strandat 859.477 kb on + strand, within MMJJ_RS04615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
remove
857,450 + MMJJ_RS04600 0.35 +0.2
857,665 - -1.3
857,709 - -1.9
857,709 - -2.1
857,710 + -2.7
857,710 + -3.3
857,729 - -2.7
857,729 - +2.0
858,136 + -1.6
858,260 - -0.8
858,276 + -1.1
858,299 - +0.5
858,300 + -0.3
858,303 + -2.8
858,304 - +3.5
858,305 + +0.9
858,362 + -3.2
858,415 - MMJJ_RS04610 0.14 -1.8
858,593 - MMJJ_RS04610 0.60 -1.0
858,602 - MMJJ_RS04610 0.62 -1.0
858,603 + MMJJ_RS04610 0.62 -1.9
858,610 + MMJJ_RS04610 0.64 -1.2
858,631 + MMJJ_RS04610 0.70 -0.1
858,631 + MMJJ_RS04610 0.70 -0.6
858,696 - MMJJ_RS04610 0.87 +1.7
858,697 + MMJJ_RS04610 0.87 -0.1
858,697 + MMJJ_RS04610 0.87 -2.8
858,700 + MMJJ_RS04610 0.88 -0.5
858,707 - MMJJ_RS04610 0.90 -1.3
858,720 - +0.5
858,726 - -2.3
858,746 - -2.4
858,762 - +0.9
858,763 + -1.1
858,766 - -0.4
858,766 - +0.1
858,766 - -0.3
858,766 - -2.6
858,766 - +0.8
858,766 - +1.6
858,766 - -0.2
858,766 - +0.7
858,766 - -0.7
858,766 - -1.1
858,766 - -0.2
858,766 - -0.6
858,766 - -0.8
858,766 - +2.3
858,766 - +1.6
858,767 + -3.3
858,767 + +0.8
858,767 + +0.0
858,767 + +0.7
858,767 + -1.6
858,767 + -2.0
858,767 + -1.0
858,767 + +1.2
858,767 + +0.7
858,767 + +1.2
858,767 + +0.3
858,767 + +2.8
858,767 + +0.2
858,772 - -4.3
858,773 + -0.4
858,773 + +0.8
858,774 - +0.5
858,775 + +1.7
858,775 + +0.9
858,783 + +1.8
858,793 + +2.6
858,793 + -0.9
858,805 + -1.1
858,827 + -0.7
858,827 + +0.3
858,833 - -1.1
858,838 - -1.6
858,838 - -1.9
858,839 + -1.1
858,855 - -1.8
858,856 + +0.2
858,860 + -2.9
858,860 + +0.2
858,864 - -2.5
858,869 - -2.6
858,869 - -0.1
858,869 - -2.1
858,870 + -2.2
858,870 + -2.0
858,871 - -3.8
858,871 - -2.3
858,871 - +2.2
858,871 - -0.8
858,871 - -2.7
858,871 - -1.5
858,871 - -3.1
858,871 - -2.2
858,871 - -2.6
858,871 - -2.7
858,871 - -2.6
858,872 + -1.8
858,872 + -3.4
858,872 + -2.2
858,872 + -2.0
858,872 + +0.2
858,872 + -4.0
858,872 + -2.2
858,872 + -1.1
858,872 + -2.0
858,872 + +0.2
858,873 - -2.1
858,873 - -0.8
858,873 - -0.5
858,873 - -1.8
858,873 - -0.6
858,873 - -4.1
858,873 - +1.2
858,873 - -2.6
858,873 - -2.1
858,873 - -3.0
858,873 - -4.6
858,874 + -3.7
858,874 + -1.9
858,874 + -1.2
858,874 + -1.5
858,875 - -2.6
858,875 - -3.8
858,875 - -2.6
858,875 - -2.3
858,875 - -2.0
858,876 + -0.3
858,876 + -3.8
858,876 + -3.5
858,876 + -2.2
858,880 - -3.5
858,880 - -1.2
858,881 + -2.2
858,881 + -2.6
858,881 + -0.1
858,881 + -3.3
858,886 - -3.0
858,887 + -1.5
858,894 - -2.2
858,894 - -2.1
858,894 - -4.4
858,895 + -2.1
858,895 + -3.6
858,895 + -3.8
858,895 + -1.8
858,897 - -0.8
858,898 + -2.5
858,898 + -4.3
858,898 + -3.1
858,898 + -1.6
858,898 + -3.1
858,903 - -1.1
858,904 + -0.3
858,904 + -2.0
858,907 - -2.7
858,907 - -1.5
858,908 + -2.8
858,908 + -4.8
858,911 - -4.1
858,911 - -3.4
858,912 + -1.8
858,913 - -1.8
858,914 + -3.5
858,914 + -2.7
858,918 + -0.8
858,918 + -2.9
858,919 - -2.9
858,919 - -2.9
858,955 - +0.1
858,955 - -0.1
858,956 + -0.8
858,991 + +1.2
859,036 + +1.2
859,074 - -0.3
859,074 - -0.3
859,099 + -0.3
859,477 + MMJJ_RS04615 0.33 -0.3

Or see this region's nucleotide sequence