Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotides MMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides MMJJ_RS02190 and MMJJ_RS02195 are separated by 26 nucleotides
MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539
_RS02180
MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212
_RS02185
MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279
_RS02190
MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316
_RS02195
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 414.450 kb on - strand at 414.453 kb on - strand at 414.531 kb on - strand at 414.531 kb on - strand at 414.532 kb on + strand at 414.532 kb on + strand at 414.534 kb on + strand at 414.563 kb on + strand at 414.563 kb on + strand at 414.569 kb on + strand at 414.569 kb on + strand at 414.573 kb on - strand at 414.574 kb on + strand at 414.612 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.695 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand at 414.768 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.778 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.924 kb on - strand, within MMJJ_RS02185 at 414.925 kb on + strand, within MMJJ_RS02185 at 414.960 kb on - strand, within MMJJ_RS02185 at 414.982 kb on - strand, within MMJJ_RS02185 at 414.997 kb on - strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 415.038 kb on - strand, within MMJJ_RS02185 at 415.068 kb on - strand, within MMJJ_RS02185 at 415.084 kb on - strand, within MMJJ_RS02185 at 415.116 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.149 kb on + strand, within MMJJ_RS02185 at 415.172 kb on - strand at 415.204 kb on - strand at 415.228 kb on + strand at 415.228 kb on + strand at 415.229 kb on - strand at 415.230 kb on + strand at 415.235 kb on + strand at 415.246 kb on - strand at 415.255 kb on - strand at 415.261 kb on + strand at 415.314 kb on - strand at 415.315 kb on + strand at 415.315 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.361 kb on - strand at 415.375 kb on + strand at 415.378 kb on - strand at 415.378 kb on - strand at 415.379 kb on + strand at 415.439 kb on - strand at 415.513 kb on - strand at 415.513 kb on - strand at 415.559 kb on - strand at 415.572 kb on - strand at 415.609 kb on + strand at 415.612 kb on - strand at 415.845 kb on - strand, within MMJJ_RS02190 at 415.846 kb on + strand, within MMJJ_RS02190 at 415.863 kb on - strand, within MMJJ_RS02190 at 415.865 kb on - strand, within MMJJ_RS02190 at 415.865 kb on - strand, within MMJJ_RS02190 at 415.892 kb on + strand, within MMJJ_RS02190 at 415.905 kb on - strand, within MMJJ_RS02190 at 415.915 kb on - strand, within MMJJ_RS02190 at 415.915 kb on - strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.917 kb on - strand, within MMJJ_RS02190 at 415.917 kb on - strand, within MMJJ_RS02190 at 415.918 kb on + strand, within MMJJ_RS02190 at 415.918 kb on + strand, within MMJJ_RS02190 at 415.921 kb on + strand, within MMJJ_RS02190 at 415.939 kb on - strand, within MMJJ_RS02190 at 416.012 kb on + strand, within MMJJ_RS02190 at 416.044 kb on - strand, within MMJJ_RS02190 at 416.079 kb on - strand, within MMJJ_RS02190 at 416.082 kb on - strand, within MMJJ_RS02190 at 416.158 kb on - strand, within MMJJ_RS02190 at 416.159 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.178 kb on + strand, within MMJJ_RS02190 at 416.178 kb on + strand, within MMJJ_RS02190 at 416.182 kb on + strand, within MMJJ_RS02190 at 416.265 kb on + strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.298 kb on - strand, within MMJJ_RS02190 at 416.300 kb on - strand, within MMJJ_RS02190 at 416.438 kb on + strand, within MMJJ_RS02190 at 416.528 kb on + strand, within MMJJ_RS02190 at 416.528 kb on + strand, within MMJJ_RS02190 at 416.536 kb on - strand, within MMJJ_RS02190 at 416.537 kb on + strand, within MMJJ_RS02190 at 416.537 kb on + strand, within MMJJ_RS02190 at 416.572 kb on - strand, within MMJJ_RS02190 at 416.583 kb on - strand, within MMJJ_RS02190 at 416.594 kb on + strand, within MMJJ_RS02190 at 416.629 kb on - strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.652 kb on + strand, within MMJJ_RS02190 at 416.655 kb on - strand, within MMJJ_RS02190 at 416.656 kb on + strand, within MMJJ_RS02190 at 416.659 kb on - strand, within MMJJ_RS02190 at 416.659 kb on - strand, within MMJJ_RS02190 at 416.701 kb on - strand, within MMJJ_RS02190 at 416.726 kb on + strand, within MMJJ_RS02190 at 416.805 kb on - strand, within MMJJ_RS02190 at 416.826 kb on - strand, within MMJJ_RS02190 at 416.826 kb on - strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.843 kb on + strand, within MMJJ_RS02190 at 416.843 kb on + strand, within MMJJ_RS02190 at 416.935 kb on + strand, within MMJJ_RS02190 at 416.939 kb on + strand, within MMJJ_RS02190 at 417.081 kb on + strand, within MMJJ_RS02190 at 417.155 kb on + strand at 417.258 kb on - strand at 417.268 kb on - strand at 417.272 kb on - strand at 417.282 kb on - strand at 417.283 kb on + strand at 417.292 kb on - strand at 417.308 kb on + strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.366 kb on + strand at 417.376 kb on + strand at 417.419 kb on - strand, within MMJJ_RS02195 at 417.434 kb on + strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.484 kb on + strand, within MMJJ_RS02195 at 417.529 kb on + strand, within MMJJ_RS02195 at 417.537 kb on + strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.559 kb on - strand, within MMJJ_RS02195 at 417.560 kb on + strand, within MMJJ_RS02195 at 417.658 kb on - strand, within MMJJ_RS02195 at 417.739 kb on + strand, within MMJJ_RS02195 at 417.754 kb on + strand, within MMJJ_RS02195 at 417.783 kb on - strand, within MMJJ_RS02195 at 417.785 kb on - strand, within MMJJ_RS02195 at 417.786 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.855 kb on - strand, within MMJJ_RS02195 at 417.856 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.930 kb on + strand, within MMJJ_RS02195 at 417.931 kb on - strand, within MMJJ_RS02195 at 417.932 kb on + strand, within MMJJ_RS02195 at 417.936 kb on + strand, within MMJJ_RS02195 at 418.055 kb on - strand, within MMJJ_RS02195 at 418.067 kb on - strand, within MMJJ_RS02195 at 418.068 kb on + strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.120 kb on + strand, within MMJJ_RS02195 at 418.215 kb on - strand, within MMJJ_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 414,450 - -0.4 414,453 - +0.9 414,531 - +1.6 414,531 - +0.1 414,532 + -0.4 414,532 + -2.6 414,534 + +1.9 414,563 + -0.1 414,563 + -1.3 414,569 + -0.5 414,569 + +1.1 414,573 - +0.6 414,574 + +0.1 414,612 - -0.5 414,614 - +0.4 414,614 - +0.1 414,614 - +2.9 414,695 - MMJJ_RS02185 0.15 +2.1 414,768 - -0.9 414,768 - MMJJ_RS02185 0.27 -3.0 414,768 - MMJJ_RS02185 0.27 +0.4 414,770 - MMJJ_RS02185 0.28 -2.1 414,770 - MMJJ_RS02185 0.28 -3.1 414,778 + MMJJ_RS02185 0.29 -1.1 414,917 + MMJJ_RS02185 0.52 +0.0 414,917 + MMJJ_RS02185 0.52 +2.1 414,924 - MMJJ_RS02185 0.53 -1.4 414,925 + MMJJ_RS02185 0.53 -2.3 414,960 - MMJJ_RS02185 0.59 +0.8 414,982 - MMJJ_RS02185 0.62 -0.5 414,997 - MMJJ_RS02185 0.65 -0.1 414,998 + MMJJ_RS02185 0.65 -1.4 414,998 + MMJJ_RS02185 0.65 -4.0 415,038 - MMJJ_RS02185 0.71 +0.2 415,068 - MMJJ_RS02185 0.76 -0.1 415,084 - MMJJ_RS02185 0.79 +1.9 415,116 + MMJJ_RS02185 0.84 +2.2 415,145 + MMJJ_RS02185 0.89 +0.3 415,145 + MMJJ_RS02185 0.89 -2.9 415,149 + MMJJ_RS02185 0.90 -3.8 415,172 - +0.4 415,204 - +2.1 415,228 + -0.4 415,228 + +0.2 415,229 - -2.0 415,230 + +0.1 415,235 + +0.2 415,246 - +1.1 415,255 - -2.4 415,261 + -2.2 415,314 - -1.0 415,315 + +3.6 415,315 + +1.6 415,347 + +2.2 415,347 + -0.5 415,347 + +1.0 415,347 + +1.7 415,361 - -1.5 415,375 + +0.9 415,378 - +1.1 415,378 - -2.3 415,379 + +0.7 415,439 - -0.5 415,513 - +5.0 415,513 - +2.6 415,559 - +4.2 415,572 - +3.9 415,609 + +6.0 415,612 - +3.7 415,845 - MMJJ_RS02190 0.22 +4.6 415,846 + MMJJ_RS02190 0.23 +3.1 415,863 - MMJJ_RS02190 0.23 +1.5 415,865 - MMJJ_RS02190 0.24 +3.5 415,865 - MMJJ_RS02190 0.24 +3.0 415,892 + MMJJ_RS02190 0.25 +3.8 415,905 - MMJJ_RS02190 0.26 +4.8 415,915 - MMJJ_RS02190 0.26 +4.9 415,915 - MMJJ_RS02190 0.26 +4.2 415,916 + MMJJ_RS02190 0.26 +2.2 415,916 + MMJJ_RS02190 0.26 +3.7 415,916 + MMJJ_RS02190 0.26 +3.5 415,917 - MMJJ_RS02190 0.26 +4.4 415,917 - MMJJ_RS02190 0.26 +4.1 415,918 + MMJJ_RS02190 0.26 +3.5 415,918 + MMJJ_RS02190 0.26 +3.6 415,921 + MMJJ_RS02190 0.27 +4.3 415,939 - MMJJ_RS02190 0.28 +3.3 416,012 + MMJJ_RS02190 0.31 +3.5 416,044 - MMJJ_RS02190 0.33 +0.0 416,079 - MMJJ_RS02190 0.35 +3.8 416,082 - MMJJ_RS02190 0.35 +3.6 416,158 - MMJJ_RS02190 0.39 +4.8 416,159 + MMJJ_RS02190 0.39 +4.0 416,161 + MMJJ_RS02190 0.40 +3.1 416,161 + MMJJ_RS02190 0.40 +3.2 416,161 + MMJJ_RS02190 0.40 +2.1 416,177 - MMJJ_RS02190 0.40 +3.4 416,177 - MMJJ_RS02190 0.40 +3.8 416,177 - MMJJ_RS02190 0.40 +3.6 416,178 + MMJJ_RS02190 0.40 +5.0 416,178 + MMJJ_RS02190 0.40 +3.2 416,182 + MMJJ_RS02190 0.41 +2.3 416,265 + MMJJ_RS02190 0.45 +2.9 416,291 - MMJJ_RS02190 0.47 +1.5 416,291 - MMJJ_RS02190 0.47 +3.7 416,291 - MMJJ_RS02190 0.47 +0.7 416,292 + MMJJ_RS02190 0.47 +3.2 416,292 + MMJJ_RS02190 0.47 +3.4 416,292 + MMJJ_RS02190 0.47 +3.3 416,296 + MMJJ_RS02190 0.47 +3.7 416,296 + MMJJ_RS02190 0.47 -1.5 416,296 + MMJJ_RS02190 0.47 +0.2 416,296 + MMJJ_RS02190 0.47 +1.3 416,298 - MMJJ_RS02190 0.47 +2.8 416,300 - MMJJ_RS02190 0.47 +3.2 416,438 + MMJJ_RS02190 0.55 +3.3 416,528 + MMJJ_RS02190 0.59 +3.0 416,528 + MMJJ_RS02190 0.59 +1.8 416,536 - MMJJ_RS02190 0.60 +4.8 416,537 + MMJJ_RS02190 0.60 +3.7 416,537 + MMJJ_RS02190 0.60 +4.2 416,572 - MMJJ_RS02190 0.62 +3.5 416,583 - MMJJ_RS02190 0.62 +4.7 416,594 + MMJJ_RS02190 0.63 +4.2 416,629 - MMJJ_RS02190 0.65 +5.0 416,635 + MMJJ_RS02190 0.65 -3.0 416,635 + MMJJ_RS02190 0.65 +2.9 416,635 + MMJJ_RS02190 0.65 +3.1 416,652 + MMJJ_RS02190 0.66 +4.6 416,655 - MMJJ_RS02190 0.66 +2.7 416,656 + MMJJ_RS02190 0.66 +2.5 416,659 - MMJJ_RS02190 0.66 +4.1 416,659 - MMJJ_RS02190 0.66 +1.5 416,701 - MMJJ_RS02190 0.69 +1.2 416,726 + MMJJ_RS02190 0.70 +2.1 416,805 - MMJJ_RS02190 0.74 +3.6 416,826 - MMJJ_RS02190 0.75 +3.9 416,826 - MMJJ_RS02190 0.75 +1.5 416,827 + MMJJ_RS02190 0.76 +4.0 416,827 + MMJJ_RS02190 0.76 +2.9 416,827 + MMJJ_RS02190 0.76 +1.9 416,843 + MMJJ_RS02190 0.76 +2.5 416,843 + MMJJ_RS02190 0.76 +3.6 416,935 + MMJJ_RS02190 0.81 +3.7 416,939 + MMJJ_RS02190 0.82 +2.8 417,081 + MMJJ_RS02190 0.89 +2.6 417,155 + +2.2 417,258 - +2.9 417,268 - +2.2 417,272 - +3.3 417,282 - +2.6 417,283 + +2.6 417,292 - +1.0 417,308 + +3.2 417,312 - -1.9 417,312 - +1.4 417,312 - -1.7 417,312 - +1.6 417,312 - +1.4 417,313 + -0.5 417,313 + +1.9 417,313 + +2.9 417,313 + +0.3 417,313 + -0.9 417,366 + +0.5 417,376 + -1.5 417,419 - MMJJ_RS02195 0.11 +0.1 417,434 + MMJJ_RS02195 0.13 -3.2 417,474 - MMJJ_RS02195 0.17 +0.5 417,474 - MMJJ_RS02195 0.17 -2.3 417,474 - MMJJ_RS02195 0.17 +0.6 417,475 + MMJJ_RS02195 0.17 +2.4 417,475 + MMJJ_RS02195 0.17 -0.5 417,475 + MMJJ_RS02195 0.17 +1.3 417,475 + MMJJ_RS02195 0.17 +2.6 417,475 + MMJJ_RS02195 0.17 +1.1 417,475 + MMJJ_RS02195 0.17 -0.2 417,484 + MMJJ_RS02195 0.18 +1.3 417,529 + MMJJ_RS02195 0.22 -1.3 417,537 + MMJJ_RS02195 0.23 +2.4 417,557 - MMJJ_RS02195 0.25 +0.1 417,557 - MMJJ_RS02195 0.25 +0.2 417,557 - MMJJ_RS02195 0.25 +1.0 417,559 - MMJJ_RS02195 0.25 -1.9 417,560 + MMJJ_RS02195 0.25 +2.4 417,658 - MMJJ_RS02195 0.35 +0.8 417,739 + MMJJ_RS02195 0.43 +3.7 417,754 + MMJJ_RS02195 0.44 +1.7 417,783 - MMJJ_RS02195 0.47 +0.1 417,785 - MMJJ_RS02195 0.47 -1.1 417,786 + MMJJ_RS02195 0.47 +1.1 417,839 + MMJJ_RS02195 0.53 +2.3 417,839 + MMJJ_RS02195 0.53 +3.6 417,855 - MMJJ_RS02195 0.54 +0.3 417,856 + MMJJ_RS02195 0.54 +3.3 417,916 + MMJJ_RS02195 0.60 +1.0 417,916 + MMJJ_RS02195 0.60 +0.7 417,930 + MMJJ_RS02195 0.62 +1.7 417,931 - MMJJ_RS02195 0.62 -2.8 417,932 + MMJJ_RS02195 0.62 +3.3 417,936 + MMJJ_RS02195 0.62 +1.8 418,055 - MMJJ_RS02195 0.74 -0.2 418,067 - MMJJ_RS02195 0.75 +4.3 418,068 + MMJJ_RS02195 0.75 +1.7 418,119 - MMJJ_RS02195 0.80 +0.8 418,119 - MMJJ_RS02195 0.80 -1.2 418,119 - MMJJ_RS02195 0.80 +3.6 418,119 - MMJJ_RS02195 0.80 -1.0 418,119 - MMJJ_RS02195 0.80 +1.5 418,120 + MMJJ_RS02195 0.81 +2.2 418,215 - MMJJ_RS02195 0.90 +3.5
Or see this region's nucleotide sequence