Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02170 and MMJJ_RS02175 are separated by 9 nucleotides MMJJ_RS02175 and MMJJ_RS02180 are separated by 75 nucleotides MMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotides MMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides
MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586
_RS02170
MMJJ_RS02175: MMJJ_RS02175 - imidazoleglycerol-phosphate dehydratase HisB, at 412,596 to 413,168
_RS02175
MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539
_RS02180
MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212
_RS02185
MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279
_RS02190
Position (kb) 413
414
415 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 412.285 kb on + strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.294 kb on + strand, within MMJJ_RS02170 at 412.311 kb on - strand, within MMJJ_RS02170 at 412.314 kb on + strand, within MMJJ_RS02170 at 412.315 kb on - strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.333 kb on + strand, within MMJJ_RS02170 at 412.348 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.413 kb on - strand, within MMJJ_RS02170 at 412.473 kb on - strand, within MMJJ_RS02170 at 412.478 kb on + strand, within MMJJ_RS02170 at 412.495 kb on + strand, within MMJJ_RS02170 at 412.543 kb on + strand at 412.717 kb on + strand at 413.196 kb on + strand at 413.196 kb on + strand at 413.198 kb on + strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.201 kb on + strand at 413.222 kb on - strand at 413.223 kb on + strand at 413.246 kb on + strand at 413.541 kb on + strand, within MMJJ_RS02180 at 413.556 kb on - strand, within MMJJ_RS02180 at 413.711 kb on + strand, within MMJJ_RS02180 at 413.737 kb on + strand, within MMJJ_RS02180 at 413.820 kb on - strand, within MMJJ_RS02180 at 413.917 kb on - strand, within MMJJ_RS02180 at 413.920 kb on + strand, within MMJJ_RS02180 at 413.961 kb on + strand, within MMJJ_RS02180 at 414.004 kb on + strand, within MMJJ_RS02180 at 414.008 kb on - strand, within MMJJ_RS02180 at 414.251 kb on - strand, within MMJJ_RS02180 at 414.256 kb on + strand, within MMJJ_RS02180 at 414.263 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.293 kb on - strand, within MMJJ_RS02180 at 414.385 kb on + strand, within MMJJ_RS02180 at 414.402 kb on - strand, within MMJJ_RS02180 at 414.450 kb on - strand at 414.453 kb on - strand at 414.531 kb on - strand at 414.531 kb on - strand at 414.532 kb on + strand at 414.532 kb on + strand at 414.534 kb on + strand at 414.563 kb on + strand at 414.563 kb on + strand at 414.569 kb on + strand at 414.569 kb on + strand at 414.573 kb on - strand at 414.574 kb on + strand at 414.612 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.695 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand at 414.768 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.778 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.924 kb on - strand, within MMJJ_RS02185 at 414.925 kb on + strand, within MMJJ_RS02185 at 414.960 kb on - strand, within MMJJ_RS02185 at 414.982 kb on - strand, within MMJJ_RS02185 at 414.997 kb on - strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 415.038 kb on - strand, within MMJJ_RS02185 at 415.068 kb on - strand, within MMJJ_RS02185 at 415.084 kb on - strand, within MMJJ_RS02185 at 415.116 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.149 kb on + strand, within MMJJ_RS02185 at 415.172 kb on - strand at 415.204 kb on - strand at 415.228 kb on + strand at 415.228 kb on + strand at 415.229 kb on - strand at 415.230 kb on + strand at 415.235 kb on + strand at 415.246 kb on - strand at 415.255 kb on - strand at 415.261 kb on + strand at 415.314 kb on - strand at 415.315 kb on + strand at 415.315 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.361 kb on - strand at 415.375 kb on + strand at 415.378 kb on - strand at 415.378 kb on - strand at 415.379 kb on + strand at 415.439 kb on - strand at 415.513 kb on - strand at 415.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 412,285 + MMJJ_RS02170 0.45 +0.6 412,287 - MMJJ_RS02170 0.45 +1.3 412,287 - MMJJ_RS02170 0.45 -2.5 412,287 - MMJJ_RS02170 0.45 -2.3 412,288 + MMJJ_RS02170 0.46 -2.8 412,288 + MMJJ_RS02170 0.46 +0.5 412,288 + MMJJ_RS02170 0.46 +1.1 412,294 + MMJJ_RS02170 0.47 -0.5 412,311 - MMJJ_RS02170 0.50 -0.3 412,314 + MMJJ_RS02170 0.50 -3.4 412,315 - MMJJ_RS02170 0.50 -0.5 412,316 + MMJJ_RS02170 0.51 -0.5 412,316 + MMJJ_RS02170 0.51 -0.1 412,333 + MMJJ_RS02170 0.54 -0.5 412,348 + MMJJ_RS02170 0.56 +4.4 412,396 + MMJJ_RS02170 0.65 -1.7 412,396 + MMJJ_RS02170 0.65 +2.2 412,413 - MMJJ_RS02170 0.68 -3.3 412,473 - MMJJ_RS02170 0.79 -0.1 412,478 + MMJJ_RS02170 0.80 +3.0 412,495 + MMJJ_RS02170 0.83 +0.6 412,543 + -0.5 412,717 + -0.5 413,196 + -2.0 413,196 + -1.7 413,198 + -1.9 413,200 - -2.2 413,200 - -0.2 413,200 - -1.1 413,201 + -0.9 413,222 - -2.1 413,223 + -1.5 413,246 + -1.7 413,541 + MMJJ_RS02180 0.23 -1.2 413,556 - MMJJ_RS02180 0.24 +1.6 413,711 + MMJJ_RS02180 0.36 -1.0 413,737 + MMJJ_RS02180 0.38 -2.8 413,820 - MMJJ_RS02180 0.44 -1.2 413,917 - MMJJ_RS02180 0.52 +1.4 413,920 + MMJJ_RS02180 0.52 -2.7 413,961 + MMJJ_RS02180 0.55 -0.7 414,004 + MMJJ_RS02180 0.59 +0.1 414,008 - MMJJ_RS02180 0.59 +0.1 414,251 - MMJJ_RS02180 0.78 +4.3 414,256 + MMJJ_RS02180 0.78 +1.4 414,263 - MMJJ_RS02180 0.79 +1.3 414,291 - MMJJ_RS02180 0.81 +1.4 414,291 - MMJJ_RS02180 0.81 -3.8 414,291 - MMJJ_RS02180 0.81 -1.2 414,291 - MMJJ_RS02180 0.81 -1.3 414,293 - MMJJ_RS02180 0.81 +2.8 414,385 + MMJJ_RS02180 0.88 +0.3 414,402 - MMJJ_RS02180 0.89 +2.3 414,450 - -0.4 414,453 - +0.9 414,531 - +1.6 414,531 - +0.1 414,532 + -0.4 414,532 + -2.6 414,534 + +1.9 414,563 + -0.1 414,563 + -1.3 414,569 + -0.5 414,569 + +1.1 414,573 - +0.6 414,574 + +0.1 414,612 - -0.5 414,614 - +0.4 414,614 - +0.1 414,614 - +2.9 414,695 - MMJJ_RS02185 0.15 +2.1 414,768 - -0.9 414,768 - MMJJ_RS02185 0.27 -3.0 414,768 - MMJJ_RS02185 0.27 +0.4 414,770 - MMJJ_RS02185 0.28 -2.1 414,770 - MMJJ_RS02185 0.28 -3.1 414,778 + MMJJ_RS02185 0.29 -1.1 414,917 + MMJJ_RS02185 0.52 +0.0 414,917 + MMJJ_RS02185 0.52 +2.1 414,924 - MMJJ_RS02185 0.53 -1.4 414,925 + MMJJ_RS02185 0.53 -2.3 414,960 - MMJJ_RS02185 0.59 +0.8 414,982 - MMJJ_RS02185 0.62 -0.5 414,997 - MMJJ_RS02185 0.65 -0.1 414,998 + MMJJ_RS02185 0.65 -1.4 414,998 + MMJJ_RS02185 0.65 -4.0 415,038 - MMJJ_RS02185 0.71 +0.2 415,068 - MMJJ_RS02185 0.76 -0.1 415,084 - MMJJ_RS02185 0.79 +1.9 415,116 + MMJJ_RS02185 0.84 +2.2 415,145 + MMJJ_RS02185 0.89 +0.3 415,145 + MMJJ_RS02185 0.89 -2.9 415,149 + MMJJ_RS02185 0.90 -3.8 415,172 - +0.4 415,204 - +2.1 415,228 + -0.4 415,228 + +0.2 415,229 - -2.0 415,230 + +0.1 415,235 + +0.2 415,246 - +1.1 415,255 - -2.4 415,261 + -2.2 415,314 - -1.0 415,315 + +3.6 415,315 + +1.6 415,347 + +2.2 415,347 + -0.5 415,347 + +1.0 415,347 + +1.7 415,361 - -1.5 415,375 + +0.9 415,378 - +1.1 415,378 - -2.3 415,379 + +0.7 415,439 - -0.5 415,513 - +5.0 415,513 - +2.6
Or see this region's nucleotide sequence