Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02170

Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02160 and MMJJ_RS02165 are separated by 34 nucleotidesMMJJ_RS02165 and MMJJ_RS02170 are separated by 169 nucleotidesMMJJ_RS02170 and MMJJ_RS02175 are separated by 9 nucleotidesMMJJ_RS02175 and MMJJ_RS02180 are separated by 75 nucleotides MMJJ_RS02160: MMJJ_RS02160 - amino acid ABC transporter permease, at 410,380 to 411,039 _RS02160 MMJJ_RS02165: MMJJ_RS02165 - ABC transporter substrate-binding protein, at 411,074 to 411,868 _RS02165 MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586 _RS02170 MMJJ_RS02175: MMJJ_RS02175 - imidazoleglycerol-phosphate dehydratase HisB, at 412,596 to 413,168 _RS02175 MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539 _RS02180 Position (kb) 412 413Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 411.055 kb on + strandat 411.080 kb on - strandat 411.081 kb on + strandat 411.081 kb on + strandat 411.161 kb on - strand, within MMJJ_RS02165at 411.162 kb on + strand, within MMJJ_RS02165at 411.191 kb on - strand, within MMJJ_RS02165at 411.260 kb on - strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.331 kb on + strand, within MMJJ_RS02165at 411.335 kb on + strand, within MMJJ_RS02165at 411.336 kb on - strand, within MMJJ_RS02165at 411.401 kb on - strand, within MMJJ_RS02165at 411.411 kb on + strand, within MMJJ_RS02165at 411.422 kb on - strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.549 kb on + strand, within MMJJ_RS02165at 411.558 kb on - strand, within MMJJ_RS02165at 411.559 kb on + strand, within MMJJ_RS02165at 411.656 kb on - strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.735 kb on + strand, within MMJJ_RS02165at 411.854 kb on - strandat 411.860 kb on + strandat 411.916 kb on - strandat 411.991 kb on + strandat 412.039 kb on - strandat 412.110 kb on - strand, within MMJJ_RS02170at 412.149 kb on + strand, within MMJJ_RS02170at 412.211 kb on - strand, within MMJJ_RS02170at 412.211 kb on - strand, within MMJJ_RS02170at 412.212 kb on + strand, within MMJJ_RS02170at 412.212 kb on + strand, within MMJJ_RS02170at 412.285 kb on + strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.294 kb on + strand, within MMJJ_RS02170at 412.311 kb on - strand, within MMJJ_RS02170at 412.314 kb on + strand, within MMJJ_RS02170at 412.315 kb on - strand, within MMJJ_RS02170at 412.316 kb on + strand, within MMJJ_RS02170at 412.316 kb on + strand, within MMJJ_RS02170at 412.333 kb on + strand, within MMJJ_RS02170at 412.348 kb on + strand, within MMJJ_RS02170at 412.396 kb on + strand, within MMJJ_RS02170at 412.396 kb on + strand, within MMJJ_RS02170at 412.413 kb on - strand, within MMJJ_RS02170at 412.473 kb on - strand, within MMJJ_RS02170at 412.478 kb on + strand, within MMJJ_RS02170at 412.495 kb on + strand, within MMJJ_RS02170at 412.543 kb on + strandat 412.717 kb on + strandat 413.196 kb on + strandat 413.196 kb on + strandat 413.198 kb on + strandat 413.200 kb on - strandat 413.200 kb on - strandat 413.200 kb on - strandat 413.201 kb on + strandat 413.222 kb on - strandat 413.223 kb on + strandat 413.246 kb on + strandat 413.541 kb on + strand, within MMJJ_RS02180at 413.556 kb on - strand, within MMJJ_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
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411,055 + +2.4
411,080 - +1.8
411,081 + +1.6
411,081 + +1.3
411,161 - MMJJ_RS02165 0.11 -1.8
411,162 + MMJJ_RS02165 0.11 -3.0
411,191 - MMJJ_RS02165 0.15 -0.7
411,260 - MMJJ_RS02165 0.23 +1.3
411,261 + MMJJ_RS02165 0.24 +2.0
411,261 + MMJJ_RS02165 0.24 +0.6
411,264 - MMJJ_RS02165 0.24 +2.1
411,264 - MMJJ_RS02165 0.24 +1.3
411,264 - MMJJ_RS02165 0.24 +0.9
411,265 + MMJJ_RS02165 0.24 +0.8
411,265 + MMJJ_RS02165 0.24 -0.9
411,265 + MMJJ_RS02165 0.24 -2.0
411,268 - MMJJ_RS02165 0.24 -0.5
411,268 - MMJJ_RS02165 0.24 -0.1
411,268 - MMJJ_RS02165 0.24 -1.2
411,331 + MMJJ_RS02165 0.32 -2.1
411,335 + MMJJ_RS02165 0.33 -3.5
411,336 - MMJJ_RS02165 0.33 -3.2
411,401 - MMJJ_RS02165 0.41 +2.3
411,411 + MMJJ_RS02165 0.42 -1.9
411,422 - MMJJ_RS02165 0.44 +1.8
411,471 + MMJJ_RS02165 0.50 -1.7
411,471 + MMJJ_RS02165 0.50 +1.9
411,549 + MMJJ_RS02165 0.60 +0.5
411,558 - MMJJ_RS02165 0.61 -1.1
411,559 + MMJJ_RS02165 0.61 -1.1
411,656 - MMJJ_RS02165 0.73 -4.5
411,657 + MMJJ_RS02165 0.73 +0.8
411,657 + MMJJ_RS02165 0.73 +1.0
411,735 + MMJJ_RS02165 0.83 +0.6
411,854 - +0.1
411,860 + +1.5
411,916 - -1.8
411,991 + -0.4
412,039 - +0.3
412,110 - MMJJ_RS02170 0.13 +0.6
412,149 + MMJJ_RS02170 0.20 +0.9
412,211 - MMJJ_RS02170 0.32 +0.6
412,211 - MMJJ_RS02170 0.32 -2.2
412,212 + MMJJ_RS02170 0.32 -1.1
412,212 + MMJJ_RS02170 0.32 +1.4
412,285 + MMJJ_RS02170 0.45 +0.6
412,287 - MMJJ_RS02170 0.45 +1.3
412,287 - MMJJ_RS02170 0.45 -2.5
412,287 - MMJJ_RS02170 0.45 -2.3
412,288 + MMJJ_RS02170 0.46 -2.8
412,288 + MMJJ_RS02170 0.46 +0.5
412,288 + MMJJ_RS02170 0.46 +1.1
412,294 + MMJJ_RS02170 0.47 -0.5
412,311 - MMJJ_RS02170 0.50 -0.3
412,314 + MMJJ_RS02170 0.50 -3.4
412,315 - MMJJ_RS02170 0.50 -0.5
412,316 + MMJJ_RS02170 0.51 -0.5
412,316 + MMJJ_RS02170 0.51 -0.1
412,333 + MMJJ_RS02170 0.54 -0.5
412,348 + MMJJ_RS02170 0.56 +4.4
412,396 + MMJJ_RS02170 0.65 -1.7
412,396 + MMJJ_RS02170 0.65 +2.2
412,413 - MMJJ_RS02170 0.68 -3.3
412,473 - MMJJ_RS02170 0.79 -0.1
412,478 + MMJJ_RS02170 0.80 +3.0
412,495 + MMJJ_RS02170 0.83 +0.6
412,543 + -0.5
412,717 + -0.5
413,196 + -2.0
413,196 + -1.7
413,198 + -1.9
413,200 - -2.2
413,200 - -0.2
413,200 - -1.1
413,201 + -0.9
413,222 - -2.1
413,223 + -1.5
413,246 + -1.7
413,541 + MMJJ_RS02180 0.23 -1.2
413,556 - MMJJ_RS02180 0.24 +1.6

Or see this region's nucleotide sequence