Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01235 and MMJJ_RS01240 are separated by 7 nucleotides MMJJ_RS01240 and MMJJ_RS01245 overlap by 4 nucleotides
MMJJ_RS01235: MMJJ_RS01235 - excinuclease ABC subunit UvrA, at 236,245 to 239,100
_RS01235
MMJJ_RS01240: MMJJ_RS01240 - excinuclease ABC subunit UvrC, at 239,108 to 240,691
_RS01240
MMJJ_RS01245: MMJJ_RS01245 - excinuclease ABC subunit UvrB, at 240,688 to 242,628
_RS01245
Position (kb) 239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 238.181 kb on - strand, within MMJJ_RS01235 at 238.182 kb on + strand, within MMJJ_RS01235 at 238.187 kb on + strand, within MMJJ_RS01235 at 238.268 kb on + strand, within MMJJ_RS01235 at 238.275 kb on - strand, within MMJJ_RS01235 at 238.444 kb on - strand, within MMJJ_RS01235 at 238.445 kb on + strand, within MMJJ_RS01235 at 238.467 kb on - strand, within MMJJ_RS01235 at 238.566 kb on - strand, within MMJJ_RS01235 at 238.566 kb on - strand, within MMJJ_RS01235 at 238.576 kb on + strand, within MMJJ_RS01235 at 238.576 kb on + strand, within MMJJ_RS01235 at 238.634 kb on - strand, within MMJJ_RS01235 at 238.668 kb on - strand, within MMJJ_RS01235 at 238.675 kb on + strand, within MMJJ_RS01235 at 238.693 kb on + strand, within MMJJ_RS01235 at 238.726 kb on - strand, within MMJJ_RS01235 at 238.727 kb on + strand, within MMJJ_RS01235 at 238.731 kb on - strand, within MMJJ_RS01235 at 238.731 kb on - strand, within MMJJ_RS01235 at 238.732 kb on + strand, within MMJJ_RS01235 at 238.737 kb on + strand, within MMJJ_RS01235 at 238.827 kb on + strand at 238.828 kb on - strand at 238.828 kb on - strand at 238.829 kb on + strand at 238.829 kb on + strand at 238.829 kb on + strand at 238.832 kb on - strand at 238.922 kb on - strand at 238.923 kb on + strand at 238.923 kb on + strand at 238.949 kb on - strand at 239.055 kb on + strand at 239.104 kb on - strand at 239.112 kb on - strand at 239.113 kb on + strand at 239.147 kb on - strand at 239.149 kb on - strand at 239.154 kb on + strand at 239.215 kb on - strand at 239.219 kb on + strand at 239.292 kb on - strand, within MMJJ_RS01240 at 239.349 kb on + strand, within MMJJ_RS01240 at 239.360 kb on - strand, within MMJJ_RS01240 at 239.361 kb on + strand, within MMJJ_RS01240 at 239.368 kb on + strand, within MMJJ_RS01240 at 239.374 kb on + strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.397 kb on + strand, within MMJJ_RS01240 at 239.397 kb on + strand, within MMJJ_RS01240 at 239.398 kb on - strand, within MMJJ_RS01240 at 239.403 kb on + strand, within MMJJ_RS01240 at 239.403 kb on + strand, within MMJJ_RS01240 at 239.447 kb on + strand, within MMJJ_RS01240 at 239.479 kb on - strand, within MMJJ_RS01240 at 239.502 kb on + strand, within MMJJ_RS01240 at 239.502 kb on + strand, within MMJJ_RS01240 at 239.581 kb on - strand, within MMJJ_RS01240 at 239.606 kb on + strand, within MMJJ_RS01240 at 239.606 kb on + strand, within MMJJ_RS01240 at 239.815 kb on + strand, within MMJJ_RS01240 at 239.866 kb on - strand, within MMJJ_RS01240 at 239.869 kb on + strand, within MMJJ_RS01240 at 239.964 kb on + strand, within MMJJ_RS01240 at 239.966 kb on - strand, within MMJJ_RS01240 at 239.996 kb on + strand at 239.998 kb on + strand, within MMJJ_RS01240 at 239.998 kb on + strand, within MMJJ_RS01240 at 240.032 kb on + strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.042 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.101 kb on + strand, within MMJJ_RS01240 at 240.234 kb on - strand, within MMJJ_RS01240 at 240.250 kb on - strand, within MMJJ_RS01240 at 240.275 kb on + strand, within MMJJ_RS01240 at 240.298 kb on - strand, within MMJJ_RS01240 at 240.394 kb on - strand, within MMJJ_RS01240 at 240.402 kb on + strand, within MMJJ_RS01240 at 240.448 kb on - strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.551 kb on - strand at 240.606 kb on - strand at 240.654 kb on + strand at 240.668 kb on + strand at 240.711 kb on + strand at 240.796 kb on + strand at 240.838 kb on + strand at 240.895 kb on + strand, within MMJJ_RS01245 at 240.959 kb on + strand, within MMJJ_RS01245 at 240.974 kb on + strand, within MMJJ_RS01245 at 240.980 kb on + strand, within MMJJ_RS01245 at 240.997 kb on - strand, within MMJJ_RS01245 at 241.000 kb on + strand, within MMJJ_RS01245 at 241.018 kb on - strand, within MMJJ_RS01245 at 241.019 kb on + strand, within MMJJ_RS01245 at 241.020 kb on - strand, within MMJJ_RS01245 at 241.021 kb on + strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.223 kb on - strand, within MMJJ_RS01245 at 241.260 kb on + strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.299 kb on - strand, within MMJJ_RS01245 at 241.417 kb on - strand, within MMJJ_RS01245 at 241.484 kb on - strand, within MMJJ_RS01245 at 241.485 kb on + strand, within MMJJ_RS01245 at 241.509 kb on + strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.688 kb on - strand, within MMJJ_RS01245
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 238,181 - MMJJ_RS01235 0.68 +2.2 238,182 + MMJJ_RS01235 0.68 -2.3 238,187 + MMJJ_RS01235 0.68 -1.7 238,268 + MMJJ_RS01235 0.71 -0.9 238,275 - MMJJ_RS01235 0.71 +2.9 238,444 - MMJJ_RS01235 0.77 -0.0 238,445 + MMJJ_RS01235 0.77 -2.1 238,467 - MMJJ_RS01235 0.78 -1.8 238,566 - MMJJ_RS01235 0.81 +1.5 238,566 - MMJJ_RS01235 0.81 +1.1 238,576 + MMJJ_RS01235 0.82 +0.7 238,576 + MMJJ_RS01235 0.82 -2.4 238,634 - MMJJ_RS01235 0.84 +1.3 238,668 - MMJJ_RS01235 0.85 +0.4 238,675 + MMJJ_RS01235 0.85 -2.0 238,693 + MMJJ_RS01235 0.86 -2.6 238,726 - MMJJ_RS01235 0.87 -1.1 238,727 + MMJJ_RS01235 0.87 -2.0 238,731 - MMJJ_RS01235 0.87 +0.9 238,731 - MMJJ_RS01235 0.87 +0.7 238,732 + MMJJ_RS01235 0.87 +0.4 238,737 + MMJJ_RS01235 0.87 -1.5 238,827 + +3.4 238,828 - +1.6 238,828 - -0.3 238,829 + -3.2 238,829 + +1.7 238,829 + +0.3 238,832 - -2.8 238,922 - -1.0 238,923 + +3.2 238,923 + +1.5 238,949 - -0.7 239,055 + -0.3 239,104 - +0.9 239,112 - +2.1 239,113 + +1.2 239,147 - -1.1 239,149 - +1.3 239,154 + -2.7 239,215 - -1.9 239,219 + -0.3 239,292 - MMJJ_RS01240 0.12 -2.0 239,349 + MMJJ_RS01240 0.15 -0.4 239,360 - MMJJ_RS01240 0.16 -2.3 239,361 + MMJJ_RS01240 0.16 -1.6 239,368 + MMJJ_RS01240 0.16 -1.0 239,374 + MMJJ_RS01240 0.17 +0.4 239,396 - MMJJ_RS01240 0.18 +0.4 239,396 - MMJJ_RS01240 0.18 -0.3 239,396 - MMJJ_RS01240 0.18 -0.7 239,396 - MMJJ_RS01240 0.18 -2.4 239,396 - MMJJ_RS01240 0.18 -1.5 239,397 + MMJJ_RS01240 0.18 +2.5 239,397 + MMJJ_RS01240 0.18 -1.2 239,398 - MMJJ_RS01240 0.18 -0.0 239,403 + MMJJ_RS01240 0.19 +1.3 239,403 + MMJJ_RS01240 0.19 +1.4 239,447 + MMJJ_RS01240 0.21 -1.4 239,479 - MMJJ_RS01240 0.23 +1.2 239,502 + MMJJ_RS01240 0.25 -1.5 239,502 + MMJJ_RS01240 0.25 +0.7 239,581 - MMJJ_RS01240 0.30 +1.4 239,606 + MMJJ_RS01240 0.31 -2.5 239,606 + MMJJ_RS01240 0.31 -0.6 239,815 + MMJJ_RS01240 0.45 -1.4 239,866 - MMJJ_RS01240 0.48 -0.3 239,869 + MMJJ_RS01240 0.48 -2.5 239,964 + MMJJ_RS01240 0.54 +1.0 239,966 - MMJJ_RS01240 0.54 -0.7 239,996 + -0.0 239,998 + MMJJ_RS01240 0.56 -0.5 239,998 + MMJJ_RS01240 0.56 +0.4 240,032 + MMJJ_RS01240 0.58 +1.6 240,034 - MMJJ_RS01240 0.58 +1.0 240,034 - MMJJ_RS01240 0.58 -0.6 240,042 + MMJJ_RS01240 0.59 +1.6 240,066 + MMJJ_RS01240 0.60 -0.3 240,066 + MMJJ_RS01240 0.60 +2.1 240,101 + MMJJ_RS01240 0.63 -1.8 240,234 - MMJJ_RS01240 0.71 +0.9 240,250 - MMJJ_RS01240 0.72 -4.7 240,275 + MMJJ_RS01240 0.74 +3.3 240,298 - MMJJ_RS01240 0.75 -2.0 240,394 - MMJJ_RS01240 0.81 +1.4 240,402 + MMJJ_RS01240 0.82 -0.1 240,448 - MMJJ_RS01240 0.85 -1.1 240,449 + MMJJ_RS01240 0.85 +1.0 240,449 + MMJJ_RS01240 0.85 -1.7 240,551 - -0.2 240,606 - +1.1 240,654 + -1.6 240,668 + +0.9 240,711 + -1.3 240,796 + -1.2 240,838 + -0.1 240,895 + MMJJ_RS01245 0.11 +0.3 240,959 + MMJJ_RS01245 0.14 +0.1 240,974 + MMJJ_RS01245 0.15 -2.0 240,980 + MMJJ_RS01245 0.15 -2.0 240,997 - MMJJ_RS01245 0.16 +4.1 241,000 + MMJJ_RS01245 0.16 +1.9 241,018 - MMJJ_RS01245 0.17 -2.5 241,019 + MMJJ_RS01245 0.17 -0.5 241,020 - MMJJ_RS01245 0.17 +0.7 241,021 + MMJJ_RS01245 0.17 +1.2 241,106 - MMJJ_RS01245 0.22 -0.0 241,106 - MMJJ_RS01245 0.22 +1.0 241,130 - MMJJ_RS01245 0.23 -0.6 241,130 - MMJJ_RS01245 0.23 -4.3 241,130 - MMJJ_RS01245 0.23 -0.2 241,130 - MMJJ_RS01245 0.23 +1.4 241,130 - MMJJ_RS01245 0.23 +1.3 241,131 + MMJJ_RS01245 0.23 -1.0 241,131 + MMJJ_RS01245 0.23 +0.3 241,131 + MMJJ_RS01245 0.23 +1.0 241,131 + MMJJ_RS01245 0.23 +0.3 241,131 + MMJJ_RS01245 0.23 -1.4 241,131 + MMJJ_RS01245 0.23 +1.6 241,131 + MMJJ_RS01245 0.23 -1.2 241,132 - MMJJ_RS01245 0.23 +0.1 241,132 - MMJJ_RS01245 0.23 -0.0 241,132 - MMJJ_RS01245 0.23 +1.9 241,132 - MMJJ_RS01245 0.23 -2.0 241,132 - MMJJ_RS01245 0.23 +0.6 241,132 - MMJJ_RS01245 0.23 +0.5 241,133 + MMJJ_RS01245 0.23 -0.5 241,133 + MMJJ_RS01245 0.23 -3.0 241,133 + MMJJ_RS01245 0.23 -1.0 241,133 + MMJJ_RS01245 0.23 -1.9 241,223 - MMJJ_RS01245 0.28 -1.5 241,260 + MMJJ_RS01245 0.29 +2.8 241,295 - MMJJ_RS01245 0.31 -2.2 241,295 - MMJJ_RS01245 0.31 -3.3 241,299 - MMJJ_RS01245 0.31 -1.0 241,417 - MMJJ_RS01245 0.38 +0.6 241,484 - MMJJ_RS01245 0.41 -0.9 241,485 + MMJJ_RS01245 0.41 +0.9 241,509 + MMJJ_RS01245 0.42 -1.6 241,663 - MMJJ_RS01245 0.50 +1.6 241,663 - MMJJ_RS01245 0.50 +1.8 241,688 - MMJJ_RS01245 0.52 -2.8
Or see this region's nucleotide sequence