Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01150 and MMJJ_RS01155 are separated by 35 nucleotides MMJJ_RS01155 and MMJJ_RS01160 are separated by 271 nucleotides MMJJ_RS01160 and MMJJ_RS01170 are separated by 580 nucleotides
MMJJ_RS01150: MMJJ_RS01150 - hypothetical protein, at 223,168 to 223,587
_RS01150
MMJJ_RS01155: MMJJ_RS01155 - hypothetical protein, at 223,623 to 224,075
_RS01155
MMJJ_RS01160: MMJJ_RS01160 - AAA family ATPase, at 224,347 to 225,390
_RS01160
MMJJ_RS01170: MMJJ_RS01170 - hypothetical protein, at 225,971 to 226,942
_RS01170
Position (kb) 224
225
226 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 223.492 kb on + strand, within MMJJ_RS01150 at 223.620 kb on - strand at 223.620 kb on - strand at 223.647 kb on + strand at 223.649 kb on - strand at 223.649 kb on - strand at 223.649 kb on - strand at 223.650 kb on + strand at 223.651 kb on - strand at 223.651 kb on - strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.652 kb on + strand at 223.656 kb on + strand at 223.656 kb on + strand at 223.750 kb on - strand, within MMJJ_RS01155 at 223.782 kb on - strand, within MMJJ_RS01155 at 223.929 kb on + strand, within MMJJ_RS01155 at 223.944 kb on + strand, within MMJJ_RS01155 at 223.950 kb on - strand, within MMJJ_RS01155 at 223.952 kb on - strand, within MMJJ_RS01155 at 224.035 kb on - strand at 224.060 kb on + strand at 224.081 kb on - strand at 224.222 kb on - strand at 224.223 kb on + strand at 224.265 kb on + strand at 224.267 kb on - strand at 224.268 kb on + strand at 224.269 kb on - strand at 224.271 kb on - strand at 224.272 kb on + strand at 224.272 kb on + strand at 224.272 kb on + strand at 224.278 kb on - strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.306 kb on + strand at 224.355 kb on + strand at 224.361 kb on + strand at 224.380 kb on - strand at 224.591 kb on - strand, within MMJJ_RS01160 at 224.688 kb on - strand, within MMJJ_RS01160 at 224.689 kb on + strand, within MMJJ_RS01160 at 224.717 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.753 kb on - strand, within MMJJ_RS01160 at 224.754 kb on + strand, within MMJJ_RS01160 at 224.754 kb on + strand, within MMJJ_RS01160 at 224.754 kb on + strand, within MMJJ_RS01160 at 224.754 kb on + strand, within MMJJ_RS01160 at 224.754 kb on + strand, within MMJJ_RS01160 at 224.755 kb on - strand, within MMJJ_RS01160 at 224.755 kb on - strand, within MMJJ_RS01160 at 224.755 kb on - strand, within MMJJ_RS01160 at 224.756 kb on + strand, within MMJJ_RS01160 at 224.756 kb on + strand, within MMJJ_RS01160 at 224.756 kb on + strand, within MMJJ_RS01160 at 224.756 kb on + strand, within MMJJ_RS01160 at 224.756 kb on + strand, within MMJJ_RS01160 at 224.761 kb on + strand, within MMJJ_RS01160 at 224.761 kb on + strand, within MMJJ_RS01160 at 224.800 kb on + strand, within MMJJ_RS01160 at 224.845 kb on - strand, within MMJJ_RS01160 at 224.859 kb on - strand, within MMJJ_RS01160 at 224.859 kb on - strand, within MMJJ_RS01160 at 224.869 kb on - strand, within MMJJ_RS01160 at 224.869 kb on - strand, within MMJJ_RS01160 at 224.870 kb on + strand, within MMJJ_RS01160 at 224.870 kb on + strand, within MMJJ_RS01160 at 224.942 kb on - strand, within MMJJ_RS01160 at 224.942 kb on - strand, within MMJJ_RS01160 at 224.976 kb on - strand, within MMJJ_RS01160 at 224.976 kb on - strand, within MMJJ_RS01160 at 224.977 kb on + strand, within MMJJ_RS01160 at 225.020 kb on + strand, within MMJJ_RS01160 at 225.028 kb on - strand, within MMJJ_RS01160 at 225.030 kb on - strand, within MMJJ_RS01160 at 225.030 kb on - strand, within MMJJ_RS01160 at 225.030 kb on - strand, within MMJJ_RS01160 at 225.030 kb on - strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.031 kb on + strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.032 kb on - strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.033 kb on + strand, within MMJJ_RS01160 at 225.034 kb on - strand, within MMJJ_RS01160 at 225.034 kb on - strand, within MMJJ_RS01160 at 225.034 kb on - strand, within MMJJ_RS01160 at 225.034 kb on - strand, within MMJJ_RS01160 at 225.034 kb on - strand, within MMJJ_RS01160 at 225.035 kb on + strand, within MMJJ_RS01160 at 225.035 kb on + strand, within MMJJ_RS01160 at 225.039 kb on - strand, within MMJJ_RS01160 at 225.039 kb on - strand, within MMJJ_RS01160 at 225.051 kb on - strand, within MMJJ_RS01160 at 225.055 kb on + strand, within MMJJ_RS01160 at 225.084 kb on - strand, within MMJJ_RS01160 at 225.085 kb on + strand at 225.088 kb on + strand, within MMJJ_RS01160 at 225.088 kb on + strand, within MMJJ_RS01160 at 225.111 kb on - strand, within MMJJ_RS01160 at 225.117 kb on - strand, within MMJJ_RS01160 at 225.117 kb on - strand, within MMJJ_RS01160 at 225.117 kb on - strand, within MMJJ_RS01160 at 225.117 kb on - strand, within MMJJ_RS01160 at 225.118 kb on + strand, within MMJJ_RS01160 at 225.118 kb on + strand, within MMJJ_RS01160 at 225.118 kb on + strand, within MMJJ_RS01160 at 225.118 kb on + strand, within MMJJ_RS01160 at 225.141 kb on - strand, within MMJJ_RS01160 at 225.141 kb on - strand, within MMJJ_RS01160 at 225.142 kb on + strand, within MMJJ_RS01160 at 225.196 kb on - strand, within MMJJ_RS01160 at 225.199 kb on + strand, within MMJJ_RS01160 at 225.340 kb on - strand at 225.355 kb on - strand at 225.357 kb on - strand at 225.360 kb on - strand at 225.371 kb on + strand at 225.410 kb on - strand at 225.429 kb on - strand at 225.441 kb on - strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.443 kb on - strand at 225.444 kb on + strand at 225.447 kb on + strand at 225.479 kb on - strand at 225.480 kb on + strand at 225.487 kb on - strand at 225.628 kb on + strand at 225.631 kb on - strand at 225.635 kb on - strand at 225.635 kb on - strand at 225.638 kb on - strand at 225.638 kb on - strand at 225.638 kb on - strand at 225.638 kb on - strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.701 kb on - strand at 225.701 kb on - strand at 225.701 kb on - strand at 225.718 kb on - strand at 225.754 kb on + strand at 225.771 kb on - strand at 225.771 kb on - strand at 225.771 kb on - strand at 225.771 kb on - strand at 225.771 kb on - strand at 225.772 kb on + strand at 225.772 kb on + strand at 225.772 kb on + strand at 225.772 kb on + strand at 225.774 kb on + strand at 225.808 kb on - strand at 225.847 kb on - strand at 225.848 kb on + strand at 225.885 kb on + strand at 225.885 kb on + strand at 225.900 kb on - strand at 225.910 kb on - strand at 225.911 kb on + strand at 225.912 kb on - strand at 225.912 kb on - strand at 225.913 kb on + strand at 225.913 kb on + strand at 225.913 kb on + strand at 225.914 kb on - strand at 225.915 kb on + strand at 225.915 kb on + strand at 225.929 kb on - strand at 225.930 kb on + strand at 225.934 kb on - strand at 225.998 kb on + strand at 226.001 kb on - strand at 226.001 kb on - strand at 226.002 kb on + strand at 226.021 kb on + strand at 226.025 kb on + strand at 226.025 kb on + strand at 226.043 kb on - strand at 226.043 kb on - strand at 226.043 kb on - strand at 226.044 kb on + strand at 226.044 kb on + strand at 226.044 kb on + strand at 226.044 kb on + strand at 226.044 kb on + strand at 226.084 kb on - strand, within MMJJ_RS01170 at 226.103 kb on + strand, within MMJJ_RS01170 at 226.107 kb on - strand, within MMJJ_RS01170 at 226.108 kb on + strand, within MMJJ_RS01170 at 226.108 kb on + strand, within MMJJ_RS01170 at 226.112 kb on + strand, within MMJJ_RS01170 at 226.131 kb on + strand, within MMJJ_RS01170 at 226.139 kb on - strand, within MMJJ_RS01170 at 226.168 kb on + strand, within MMJJ_RS01170 at 226.168 kb on + strand, within MMJJ_RS01170 at 226.170 kb on + strand, within MMJJ_RS01170 at 226.170 kb on + strand, within MMJJ_RS01170 at 226.170 kb on + strand, within MMJJ_RS01170 at 226.170 kb on + strand, within MMJJ_RS01170 at 226.172 kb on + strand, within MMJJ_RS01170 at 226.220 kb on + strand, within MMJJ_RS01170 at 226.220 kb on + strand, within MMJJ_RS01170 at 226.223 kb on + strand, within MMJJ_RS01170 at 226.248 kb on - strand, within MMJJ_RS01170 at 226.249 kb on + strand, within MMJJ_RS01170 at 226.259 kb on + strand, within MMJJ_RS01170 at 226.261 kb on + strand, within MMJJ_RS01170 at 226.273 kb on + strand, within MMJJ_RS01170 at 226.294 kb on - strand, within MMJJ_RS01170 at 226.295 kb on + strand, within MMJJ_RS01170 at 226.295 kb on + strand, within MMJJ_RS01170 at 226.295 kb on + strand, within MMJJ_RS01170 at 226.295 kb on + strand, within MMJJ_RS01170 at 226.300 kb on - strand, within MMJJ_RS01170 at 226.310 kb on + strand, within MMJJ_RS01170 at 226.313 kb on - strand, within MMJJ_RS01170 at 226.313 kb on - strand, within MMJJ_RS01170 at 226.313 kb on - strand, within MMJJ_RS01170 at 226.315 kb on - strand, within MMJJ_RS01170 at 226.315 kb on - strand, within MMJJ_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 223,492 + MMJJ_RS01150 0.77 -0.0 223,620 - -1.4 223,620 - +1.1 223,647 + -1.3 223,649 - -4.3 223,649 - -2.2 223,649 - -3.2 223,650 + +0.0 223,651 - +0.8 223,651 - +0.4 223,652 + -2.9 223,652 + +0.2 223,652 + +1.6 223,652 + -0.5 223,652 + +1.4 223,652 + -0.2 223,652 + +3.0 223,652 + -1.7 223,652 + -2.6 223,652 + -2.7 223,652 + +1.5 223,656 + -2.2 223,656 + -0.1 223,750 - MMJJ_RS01155 0.28 -1.2 223,782 - MMJJ_RS01155 0.35 -0.7 223,929 + MMJJ_RS01155 0.68 -0.6 223,944 + MMJJ_RS01155 0.71 -3.1 223,950 - MMJJ_RS01155 0.72 -0.4 223,952 - MMJJ_RS01155 0.73 +0.2 224,035 - -1.3 224,060 + -1.2 224,081 - -2.4 224,222 - -0.0 224,223 + +0.1 224,265 + -1.0 224,267 - -0.3 224,268 + +2.7 224,269 - +1.0 224,271 - -2.0 224,272 + -2.3 224,272 + +1.0 224,272 + +1.4 224,278 - -0.6 224,279 + -0.6 224,279 + -1.0 224,306 + -1.2 224,355 + +3.7 224,361 + +1.3 224,380 - -1.0 224,591 - MMJJ_RS01160 0.23 +2.8 224,688 - MMJJ_RS01160 0.33 +0.2 224,689 + MMJJ_RS01160 0.33 +0.9 224,717 - MMJJ_RS01160 0.35 -1.3 224,753 - MMJJ_RS01160 0.39 -1.2 224,753 - MMJJ_RS01160 0.39 +2.7 224,753 - MMJJ_RS01160 0.39 +2.3 224,753 - MMJJ_RS01160 0.39 +1.1 224,753 - MMJJ_RS01160 0.39 +0.7 224,753 - MMJJ_RS01160 0.39 +0.9 224,754 + MMJJ_RS01160 0.39 -1.4 224,754 + MMJJ_RS01160 0.39 +2.1 224,754 + MMJJ_RS01160 0.39 -1.5 224,754 + MMJJ_RS01160 0.39 -2.4 224,754 + MMJJ_RS01160 0.39 -1.6 224,755 - MMJJ_RS01160 0.39 -0.6 224,755 - MMJJ_RS01160 0.39 -1.4 224,755 - MMJJ_RS01160 0.39 +2.6 224,756 + MMJJ_RS01160 0.39 +0.0 224,756 + MMJJ_RS01160 0.39 -1.4 224,756 + MMJJ_RS01160 0.39 +1.4 224,756 + MMJJ_RS01160 0.39 +0.4 224,756 + MMJJ_RS01160 0.39 -2.0 224,761 + MMJJ_RS01160 0.40 -0.6 224,761 + MMJJ_RS01160 0.40 -2.4 224,800 + MMJJ_RS01160 0.43 -1.8 224,845 - MMJJ_RS01160 0.48 +1.3 224,859 - MMJJ_RS01160 0.49 -1.3 224,859 - MMJJ_RS01160 0.49 -2.5 224,869 - MMJJ_RS01160 0.50 +1.5 224,869 - MMJJ_RS01160 0.50 -0.1 224,870 + MMJJ_RS01160 0.50 +0.4 224,870 + MMJJ_RS01160 0.50 -1.4 224,942 - MMJJ_RS01160 0.57 -0.2 224,942 - MMJJ_RS01160 0.57 -1.4 224,976 - MMJJ_RS01160 0.60 +2.2 224,976 - MMJJ_RS01160 0.60 -0.8 224,977 + MMJJ_RS01160 0.60 -0.8 225,020 + MMJJ_RS01160 0.64 +1.6 225,028 - MMJJ_RS01160 0.65 -1.9 225,030 - MMJJ_RS01160 0.65 -2.1 225,030 - MMJJ_RS01160 0.65 +2.0 225,030 - MMJJ_RS01160 0.65 -0.2 225,030 - MMJJ_RS01160 0.65 -2.7 225,031 + MMJJ_RS01160 0.66 -0.6 225,031 + MMJJ_RS01160 0.66 +0.1 225,031 + MMJJ_RS01160 0.66 +0.0 225,031 + MMJJ_RS01160 0.66 +1.6 225,031 + MMJJ_RS01160 0.66 -3.6 225,031 + MMJJ_RS01160 0.66 +2.7 225,032 - MMJJ_RS01160 0.66 +0.3 225,032 - MMJJ_RS01160 0.66 -1.3 225,032 - MMJJ_RS01160 0.66 +0.7 225,032 - MMJJ_RS01160 0.66 +0.2 225,032 - MMJJ_RS01160 0.66 -1.7 225,032 - MMJJ_RS01160 0.66 +0.7 225,032 - MMJJ_RS01160 0.66 -2.4 225,033 + MMJJ_RS01160 0.66 +1.8 225,033 + MMJJ_RS01160 0.66 -0.6 225,033 + MMJJ_RS01160 0.66 +2.5 225,033 + MMJJ_RS01160 0.66 +1.4 225,033 + MMJJ_RS01160 0.66 +1.6 225,033 + MMJJ_RS01160 0.66 -0.2 225,033 + MMJJ_RS01160 0.66 +3.7 225,034 - MMJJ_RS01160 0.66 +2.4 225,034 - MMJJ_RS01160 0.66 -0.6 225,034 - MMJJ_RS01160 0.66 -0.4 225,034 - MMJJ_RS01160 0.66 -0.8 225,034 - MMJJ_RS01160 0.66 +1.5 225,035 + MMJJ_RS01160 0.66 +0.3 225,035 + MMJJ_RS01160 0.66 -2.0 225,039 - MMJJ_RS01160 0.66 +1.3 225,039 - MMJJ_RS01160 0.66 -3.3 225,051 - MMJJ_RS01160 0.67 -0.6 225,055 + MMJJ_RS01160 0.68 +1.7 225,084 - MMJJ_RS01160 0.71 +1.0 225,085 + -0.0 225,088 + MMJJ_RS01160 0.71 -0.4 225,088 + MMJJ_RS01160 0.71 +0.6 225,111 - MMJJ_RS01160 0.73 -0.0 225,117 - MMJJ_RS01160 0.74 +2.1 225,117 - MMJJ_RS01160 0.74 -0.9 225,117 - MMJJ_RS01160 0.74 +1.4 225,117 - MMJJ_RS01160 0.74 -0.0 225,118 + MMJJ_RS01160 0.74 -0.6 225,118 + MMJJ_RS01160 0.74 +1.1 225,118 + MMJJ_RS01160 0.74 +0.5 225,118 + MMJJ_RS01160 0.74 -0.4 225,141 - MMJJ_RS01160 0.76 -3.1 225,141 - MMJJ_RS01160 0.76 -0.0 225,142 + MMJJ_RS01160 0.76 -1.8 225,196 - MMJJ_RS01160 0.81 +1.9 225,199 + MMJJ_RS01160 0.82 +0.4 225,340 - -2.2 225,355 - +0.6 225,357 - -1.0 225,360 - +0.4 225,371 + -1.4 225,410 - +0.1 225,429 - -2.6 225,441 - -1.2 225,442 + +0.4 225,442 + -1.0 225,442 + -1.8 225,442 + -2.6 225,442 + -2.0 225,442 + +1.2 225,443 - -1.1 225,444 + +1.7 225,447 + +2.1 225,479 - +0.0 225,480 + +0.4 225,487 - +3.3 225,628 + -2.5 225,631 - -0.2 225,635 - +0.7 225,635 - -3.7 225,638 - -2.9 225,638 - +2.2 225,638 - +1.2 225,638 - +0.8 225,639 + +1.6 225,639 + -2.6 225,639 + -2.5 225,639 + +1.7 225,640 - -2.8 225,640 - +1.4 225,640 - +2.1 225,640 - -1.1 225,640 - +1.0 225,640 - +1.8 225,640 - +1.0 225,701 - -4.4 225,701 - -1.8 225,701 - +2.2 225,718 - -1.4 225,754 + -0.4 225,771 - +0.9 225,771 - +1.6 225,771 - +2.6 225,771 - -0.5 225,771 - -1.4 225,772 + +3.3 225,772 + +0.9 225,772 + +1.6 225,772 + +3.2 225,774 + +1.9 225,808 - +4.4 225,847 - +3.4 225,848 + +1.0 225,885 + +0.7 225,885 + +1.1 225,900 - -1.4 225,910 - -0.8 225,911 + +0.9 225,912 - +1.0 225,912 - -2.6 225,913 + +0.3 225,913 + -3.6 225,913 + -1.2 225,914 - +1.2 225,915 + -0.1 225,915 + -0.9 225,929 - +2.0 225,930 + -0.6 225,934 - -0.3 225,998 + +0.7 226,001 - -1.0 226,001 - -2.3 226,002 + -1.0 226,021 + +0.7 226,025 + -3.9 226,025 + -0.1 226,043 - -0.2 226,043 - -3.4 226,043 - +1.0 226,044 + +2.6 226,044 + -1.4 226,044 + -0.3 226,044 + +4.2 226,044 + -3.5 226,084 - MMJJ_RS01170 0.12 -1.2 226,103 + MMJJ_RS01170 0.14 -1.8 226,107 - MMJJ_RS01170 0.14 -0.6 226,108 + MMJJ_RS01170 0.14 -2.3 226,108 + MMJJ_RS01170 0.14 -2.6 226,112 + MMJJ_RS01170 0.15 +0.5 226,131 + MMJJ_RS01170 0.16 -2.4 226,139 - MMJJ_RS01170 0.17 -1.0 226,168 + MMJJ_RS01170 0.20 -2.8 226,168 + MMJJ_RS01170 0.20 -0.2 226,170 + MMJJ_RS01170 0.20 -1.8 226,170 + MMJJ_RS01170 0.20 -2.2 226,170 + MMJJ_RS01170 0.20 -3.6 226,170 + MMJJ_RS01170 0.20 +0.6 226,172 + MMJJ_RS01170 0.21 +2.1 226,220 + MMJJ_RS01170 0.26 -1.6 226,220 + MMJJ_RS01170 0.26 -2.7 226,223 + MMJJ_RS01170 0.26 +0.3 226,248 - MMJJ_RS01170 0.28 +0.4 226,249 + MMJJ_RS01170 0.29 -1.9 226,259 + MMJJ_RS01170 0.30 +1.0 226,261 + MMJJ_RS01170 0.30 +0.5 226,273 + MMJJ_RS01170 0.31 +1.1 226,294 - MMJJ_RS01170 0.33 +1.7 226,295 + MMJJ_RS01170 0.33 -1.6 226,295 + MMJJ_RS01170 0.33 -0.3 226,295 + MMJJ_RS01170 0.33 -3.3 226,295 + MMJJ_RS01170 0.33 +0.5 226,300 - MMJJ_RS01170 0.34 +1.5 226,310 + MMJJ_RS01170 0.35 +0.6 226,313 - MMJJ_RS01170 0.35 +1.3 226,313 - MMJJ_RS01170 0.35 +1.8 226,313 - MMJJ_RS01170 0.35 +0.0 226,315 - MMJJ_RS01170 0.35 +1.3 226,315 - MMJJ_RS01170 0.35 -2.1
Or see this region's nucleotide sequence