Strain Fitness in Pantoea sp. MT58 around IAI47_21765

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21760 and IAI47_21765 are separated by 103 nucleotidesIAI47_21765 and IAI47_21770 overlap by 4 nucleotidesIAI47_21770 and IAI47_21775 are separated by 117 nucleotides IAI47_21760: IAI47_21760 - CitMHS family transporter, at 96,647 to 97,960 _21760 IAI47_21765: IAI47_21765 - YoeB-YefM toxin-antitoxin system antitoxin YefM, at 98,064 to 98,315 _21765 IAI47_21770: IAI47_21770 - Txe/YoeB family addiction module toxin, at 98,312 to 98,566 _21770 IAI47_21775: IAI47_21775 - excinuclease ABC subunit UvrA, at 98,684 to 101,218 _21775 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 97.090 kb on + strand, within IAI47_21760at 97.168 kb on + strand, within IAI47_21760at 97.169 kb on - strand, within IAI47_21760at 97.169 kb on - strand, within IAI47_21760at 97.169 kb on - strand, within IAI47_21760at 97.205 kb on - strand, within IAI47_21760at 97.246 kb on + strand, within IAI47_21760at 97.246 kb on + strand, within IAI47_21760at 97.246 kb on + strand, within IAI47_21760at 97.246 kb on + strand, within IAI47_21760at 97.247 kb on - strand, within IAI47_21760at 97.247 kb on - strand, within IAI47_21760at 97.247 kb on - strand, within IAI47_21760at 97.292 kb on - strand, within IAI47_21760at 97.292 kb on - strand, within IAI47_21760at 97.292 kb on - strand, within IAI47_21760at 97.292 kb on - strand, within IAI47_21760at 97.357 kb on + strand, within IAI47_21760at 97.357 kb on + strand, within IAI47_21760at 97.358 kb on - strand, within IAI47_21760at 97.358 kb on - strand, within IAI47_21760at 97.380 kb on + strand, within IAI47_21760at 97.404 kb on + strand, within IAI47_21760at 97.405 kb on - strand, within IAI47_21760at 97.405 kb on - strand, within IAI47_21760at 97.426 kb on + strand, within IAI47_21760at 97.427 kb on - strand, within IAI47_21760at 97.427 kb on - strand, within IAI47_21760at 97.460 kb on + strand, within IAI47_21760at 97.460 kb on + strand, within IAI47_21760at 97.460 kb on + strand, within IAI47_21760at 97.461 kb on - strand, within IAI47_21760at 97.461 kb on - strand, within IAI47_21760at 97.461 kb on - strand, within IAI47_21760at 97.546 kb on + strand, within IAI47_21760at 97.577 kb on - strand, within IAI47_21760at 97.634 kb on + strand, within IAI47_21760at 97.634 kb on + strand, within IAI47_21760at 97.635 kb on - strand, within IAI47_21760at 97.635 kb on - strand, within IAI47_21760at 97.635 kb on - strand, within IAI47_21760at 97.644 kb on + strand, within IAI47_21760at 97.645 kb on - strand, within IAI47_21760at 97.645 kb on - strand, within IAI47_21760at 97.645 kb on - strand, within IAI47_21760at 97.645 kb on - strand, within IAI47_21760at 97.648 kb on + strand, within IAI47_21760at 97.649 kb on - strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.681 kb on + strand, within IAI47_21760at 97.682 kb on - strand, within IAI47_21760at 97.682 kb on - strand, within IAI47_21760at 97.682 kb on - strand, within IAI47_21760at 97.682 kb on - strand, within IAI47_21760at 97.682 kb on - strand, within IAI47_21760at 97.701 kb on - strand, within IAI47_21760at 97.701 kb on - strand, within IAI47_21760at 97.701 kb on - strand, within IAI47_21760at 97.742 kb on + strand, within IAI47_21760at 97.742 kb on + strand, within IAI47_21760at 97.742 kb on + strand, within IAI47_21760at 97.743 kb on - strand, within IAI47_21760at 97.743 kb on - strand, within IAI47_21760at 97.750 kb on + strand, within IAI47_21760at 97.815 kb on + strand, within IAI47_21760at 97.827 kb on - strand, within IAI47_21760at 97.909 kb on - strandat 97.909 kb on - strandat 97.959 kb on - strandat 98.030 kb on + strandat 98.031 kb on - strandat 98.031 kb on - strandat 98.042 kb on + strandat 98.042 kb on + strandat 98.042 kb on + strandat 98.042 kb on + strandat 98.080 kb on - strandat 98.197 kb on - strand, within IAI47_21765at 98.199 kb on - strand, within IAI47_21765at 98.199 kb on - strand, within IAI47_21765at 98.238 kb on - strand, within IAI47_21765at 98.265 kb on - strand, within IAI47_21765at 98.265 kb on - strand, within IAI47_21765at 98.306 kb on + strandat 98.306 kb on + strandat 98.306 kb on + strandat 98.306 kb on + strandat 98.306 kb on + strandat 98.306 kb on + strandat 98.306 kb on + strandat 98.307 kb on - strandat 98.307 kb on - strandat 98.307 kb on - strandat 98.307 kb on - strandat 98.307 kb on - strandat 98.348 kb on + strand, within IAI47_21770at 98.348 kb on + strand, within IAI47_21770at 98.348 kb on + strand, within IAI47_21770at 98.348 kb on + strand, within IAI47_21770at 98.349 kb on - strand, within IAI47_21770at 98.349 kb on - strand, within IAI47_21770at 98.349 kb on - strand, within IAI47_21770at 98.349 kb on - strand, within IAI47_21770at 98.354 kb on + strand, within IAI47_21770at 98.355 kb on - strand, within IAI47_21770at 98.355 kb on - strand, within IAI47_21770at 98.355 kb on - strand, within IAI47_21770at 98.365 kb on + strand, within IAI47_21770at 98.365 kb on + strand, within IAI47_21770at 98.365 kb on + strand, within IAI47_21770at 98.461 kb on + strand, within IAI47_21770at 98.461 kb on + strand, within IAI47_21770at 98.462 kb on - strand, within IAI47_21770at 98.462 kb on - strand, within IAI47_21770at 98.462 kb on - strand, within IAI47_21770at 98.462 kb on - strand, within IAI47_21770at 98.513 kb on + strand, within IAI47_21770at 98.513 kb on + strand, within IAI47_21770at 98.514 kb on - strand, within IAI47_21770at 98.535 kb on + strand, within IAI47_21770at 98.535 kb on + strand, within IAI47_21770at 98.536 kb on - strand, within IAI47_21770at 98.538 kb on + strand, within IAI47_21770at 98.538 kb on + strand, within IAI47_21770at 98.538 kb on + strand, within IAI47_21770at 98.539 kb on - strand, within IAI47_21770at 98.613 kb on - strandat 98.672 kb on + strandat 98.672 kb on + strandat 98.672 kb on + strandat 98.672 kb on + strandat 98.685 kb on + strandat 98.685 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.857 kb on + strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.858 kb on - strandat 98.859 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.860 kb on + strandat 98.861 kb on - strandat 98.861 kb on - strandat 98.861 kb on - strandat 98.861 kb on - strandat 98.872 kb on + strandat 98.872 kb on + strandat 98.872 kb on + strandat 98.923 kb on + strandat 98.923 kb on + strandat 98.923 kb on + strandat 98.923 kb on + strandat 98.924 kb on - strandat 98.924 kb on - strandat 98.924 kb on - strandat 98.924 kb on - strandat 98.929 kb on + strandat 98.930 kb on - strandat 98.970 kb on + strand, within IAI47_21775at 98.970 kb on + strand, within IAI47_21775at 98.970 kb on + strand, within IAI47_21775at 98.970 kb on + strand, within IAI47_21775at 98.970 kb on + strand, within IAI47_21775at 98.970 kb on + strand, within IAI47_21775at 98.971 kb on - strand, within IAI47_21775at 98.971 kb on - strand, within IAI47_21775at 98.971 kb on - strand, within IAI47_21775at 98.971 kb on - strand, within IAI47_21775at 98.971 kb on - strand, within IAI47_21775at 98.977 kb on + strand, within IAI47_21775at 98.977 kb on + strand, within IAI47_21775at 98.978 kb on - strand, within IAI47_21775at 98.978 kb on - strand, within IAI47_21775at 98.978 kb on - strand, within IAI47_21775at 98.983 kb on + strand, within IAI47_21775at 98.983 kb on + strand, within IAI47_21775at 98.983 kb on + strand, within IAI47_21775at 98.984 kb on - strand, within IAI47_21775at 98.984 kb on - strand, within IAI47_21775at 98.990 kb on + strand, within IAI47_21775at 99.072 kb on + strand, within IAI47_21775at 99.072 kb on + strand, within IAI47_21775at 99.073 kb on - strand, within IAI47_21775at 99.073 kb on - strand, within IAI47_21775at 99.101 kb on + strand, within IAI47_21775at 99.115 kb on + strand, within IAI47_21775at 99.115 kb on + strand, within IAI47_21775at 99.115 kb on + strand, within IAI47_21775at 99.116 kb on - strand, within IAI47_21775at 99.123 kb on + strand, within IAI47_21775at 99.123 kb on + strand, within IAI47_21775at 99.123 kb on + strand, within IAI47_21775at 99.124 kb on - strand, within IAI47_21775at 99.124 kb on - strand, within IAI47_21775at 99.217 kb on + strand, within IAI47_21775at 99.218 kb on - strand, within IAI47_21775at 99.218 kb on - strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.219 kb on + strand, within IAI47_21775at 99.220 kb on - strand, within IAI47_21775at 99.220 kb on - strand, within IAI47_21775at 99.220 kb on - strand, within IAI47_21775at 99.265 kb on + strand, within IAI47_21775at 99.265 kb on + strand, within IAI47_21775

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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97,090 + IAI47_21760 0.34 -0.9
97,168 + IAI47_21760 0.40 -0.9
97,169 - IAI47_21760 0.40 -0.7
97,169 - IAI47_21760 0.40 +2.8
97,169 - IAI47_21760 0.40 -1.0
97,205 - IAI47_21760 0.42 +1.9
97,246 + IAI47_21760 0.46 -0.4
97,246 + IAI47_21760 0.46 +1.6
97,246 + IAI47_21760 0.46 +1.2
97,246 + IAI47_21760 0.46 +2.1
97,247 - IAI47_21760 0.46 +1.7
97,247 - IAI47_21760 0.46 -0.8
97,247 - IAI47_21760 0.46 +2.0
97,292 - IAI47_21760 0.49 +0.3
97,292 - IAI47_21760 0.49 +1.1
97,292 - IAI47_21760 0.49 +0.1
97,292 - IAI47_21760 0.49 +0.2
97,357 + IAI47_21760 0.54 +0.1
97,357 + IAI47_21760 0.54 +0.7
97,358 - IAI47_21760 0.54 -0.9
97,358 - IAI47_21760 0.54 +1.5
97,380 + IAI47_21760 0.56 -0.5
97,404 + IAI47_21760 0.58 -0.2
97,405 - IAI47_21760 0.58 -1.2
97,405 - IAI47_21760 0.58 -0.5
97,426 + IAI47_21760 0.59 -1.3
97,427 - IAI47_21760 0.59 +1.4
97,427 - IAI47_21760 0.59 +1.8
97,460 + IAI47_21760 0.62 -0.4
97,460 + IAI47_21760 0.62 -0.7
97,460 + IAI47_21760 0.62 +0.0
97,461 - IAI47_21760 0.62 -0.7
97,461 - IAI47_21760 0.62 -0.0
97,461 - IAI47_21760 0.62 -1.1
97,546 + IAI47_21760 0.68 +3.0
97,577 - IAI47_21760 0.71 +0.7
97,634 + IAI47_21760 0.75 -0.4
97,634 + IAI47_21760 0.75 -1.5
97,635 - IAI47_21760 0.75 -0.2
97,635 - IAI47_21760 0.75 -2.2
97,635 - IAI47_21760 0.75 -1.6
97,644 + IAI47_21760 0.76 +2.6
97,645 - IAI47_21760 0.76 -0.2
97,645 - IAI47_21760 0.76 -0.9
97,645 - IAI47_21760 0.76 +2.2
97,645 - IAI47_21760 0.76 +2.9
97,648 + IAI47_21760 0.76 +0.9
97,649 - IAI47_21760 0.76 -1.5
97,681 + IAI47_21760 0.79 +2.4
97,681 + IAI47_21760 0.79 -0.8
97,681 + IAI47_21760 0.79 +2.8
97,681 + IAI47_21760 0.79 -0.9
97,681 + IAI47_21760 0.79 -1.5
97,681 + IAI47_21760 0.79 -0.4
97,681 + IAI47_21760 0.79 +0.8
97,681 + IAI47_21760 0.79 +1.4
97,681 + IAI47_21760 0.79 -0.4
97,682 - IAI47_21760 0.79 -1.5
97,682 - IAI47_21760 0.79 +1.2
97,682 - IAI47_21760 0.79 -0.9
97,682 - IAI47_21760 0.79 +1.6
97,682 - IAI47_21760 0.79 +1.2
97,701 - IAI47_21760 0.80 +2.6
97,701 - IAI47_21760 0.80 -0.9
97,701 - IAI47_21760 0.80 +0.7
97,742 + IAI47_21760 0.83 +0.4
97,742 + IAI47_21760 0.83 -0.1
97,742 + IAI47_21760 0.83 -0.7
97,743 - IAI47_21760 0.83 +1.0
97,743 - IAI47_21760 0.83 -0.9
97,750 + IAI47_21760 0.84 -0.9
97,815 + IAI47_21760 0.89 -1.6
97,827 - IAI47_21760 0.90 +1.8
97,909 - -0.7
97,909 - +3.6
97,959 - -0.7
98,030 + -0.2
98,031 - -1.2
98,031 - -0.5
98,042 + +0.2
98,042 + -0.3
98,042 + +0.7
98,042 + -2.7
98,080 - -1.0
98,197 - IAI47_21765 0.53 +0.2
98,199 - IAI47_21765 0.54 -1.5
98,199 - IAI47_21765 0.54 -0.9
98,238 - IAI47_21765 0.69 -0.7
98,265 - IAI47_21765 0.80 -0.0
98,265 - IAI47_21765 0.80 -1.1
98,306 + +1.3
98,306 + +0.6
98,306 + +0.0
98,306 + +2.8
98,306 + -1.5
98,306 + -0.3
98,306 + +0.2
98,307 - -2.1
98,307 - -2.0
98,307 - -1.7
98,307 - +0.5
98,307 - -1.7
98,348 + IAI47_21770 0.14 -0.5
98,348 + IAI47_21770 0.14 +0.1
98,348 + IAI47_21770 0.14 +1.3
98,348 + IAI47_21770 0.14 +0.7
98,349 - IAI47_21770 0.15 +1.2
98,349 - IAI47_21770 0.15 -1.6
98,349 - IAI47_21770 0.15 +0.7
98,349 - IAI47_21770 0.15 +0.2
98,354 + IAI47_21770 0.16 +1.6
98,355 - IAI47_21770 0.17 -0.9
98,355 - IAI47_21770 0.17 -2.3
98,355 - IAI47_21770 0.17 -0.7
98,365 + IAI47_21770 0.21 +1.5
98,365 + IAI47_21770 0.21 +1.2
98,365 + IAI47_21770 0.21 -2.0
98,461 + IAI47_21770 0.58 +0.2
98,461 + IAI47_21770 0.58 +2.5
98,462 - IAI47_21770 0.59 +0.2
98,462 - IAI47_21770 0.59 +1.3
98,462 - IAI47_21770 0.59 -0.1
98,462 - IAI47_21770 0.59 +0.9
98,513 + IAI47_21770 0.79 +0.7
98,513 + IAI47_21770 0.79 -1.1
98,514 - IAI47_21770 0.79 +1.9
98,535 + IAI47_21770 0.87 +1.2
98,535 + IAI47_21770 0.87 -1.2
98,536 - IAI47_21770 0.88 +0.6
98,538 + IAI47_21770 0.89 -1.0
98,538 + IAI47_21770 0.89 +1.4
98,538 + IAI47_21770 0.89 +1.3
98,539 - IAI47_21770 0.89 -0.8
98,613 - -1.1
98,672 + -0.6
98,672 + -1.1
98,672 + -1.4
98,672 + -2.0
98,685 + +1.5
98,685 + +0.1
98,857 + -0.4
98,857 + -2.4
98,857 + +0.2
98,857 + -2.3
98,857 + -1.4
98,857 + +1.5
98,857 + +0.1
98,857 + -0.6
98,857 + -1.4
98,858 - +0.4
98,858 - +1.5
98,858 - +1.1
98,858 - -2.0
98,858 - +1.6
98,858 - +0.9
98,858 - -0.3
98,858 - +0.5
98,858 - -0.5
98,859 + +1.0
98,860 + +0.9
98,860 + +0.6
98,860 + -1.1
98,860 + -1.6
98,860 + +1.4
98,860 + +2.2
98,860 + +2.5
98,861 - -2.0
98,861 - +0.8
98,861 - +1.3
98,861 - +0.9
98,872 + -1.5
98,872 + -1.0
98,872 + -1.1
98,923 + -1.2
98,923 + +0.9
98,923 + -1.0
98,923 + -0.4
98,924 - -1.0
98,924 - -1.3
98,924 - +1.1
98,924 - +3.9
98,929 + +0.8
98,930 - -0.5
98,970 + IAI47_21775 0.11 -0.8
98,970 + IAI47_21775 0.11 +2.2
98,970 + IAI47_21775 0.11 -1.7
98,970 + IAI47_21775 0.11 +0.8
98,970 + IAI47_21775 0.11 -0.2
98,970 + IAI47_21775 0.11 -1.4
98,971 - IAI47_21775 0.11 -1.3
98,971 - IAI47_21775 0.11 -2.1
98,971 - IAI47_21775 0.11 +0.9
98,971 - IAI47_21775 0.11 -0.0
98,971 - IAI47_21775 0.11 -0.0
98,977 + IAI47_21775 0.12 -0.5
98,977 + IAI47_21775 0.12 +0.1
98,978 - IAI47_21775 0.12 +1.8
98,978 - IAI47_21775 0.12 -1.7
98,978 - IAI47_21775 0.12 +0.0
98,983 + IAI47_21775 0.12 +2.4
98,983 + IAI47_21775 0.12 +0.8
98,983 + IAI47_21775 0.12 -1.0
98,984 - IAI47_21775 0.12 +0.7
98,984 - IAI47_21775 0.12 -1.2
98,990 + IAI47_21775 0.12 +0.8
99,072 + IAI47_21775 0.15 -0.8
99,072 + IAI47_21775 0.15 -0.4
99,073 - IAI47_21775 0.15 -0.2
99,073 - IAI47_21775 0.15 +0.6
99,101 + IAI47_21775 0.16 -0.7
99,115 + IAI47_21775 0.17 -0.6
99,115 + IAI47_21775 0.17 +1.2
99,115 + IAI47_21775 0.17 +1.1
99,116 - IAI47_21775 0.17 -0.2
99,123 + IAI47_21775 0.17 -2.3
99,123 + IAI47_21775 0.17 -2.3
99,123 + IAI47_21775 0.17 -0.5
99,124 - IAI47_21775 0.17 +2.3
99,124 - IAI47_21775 0.17 -1.4
99,217 + IAI47_21775 0.21 -0.4
99,218 - IAI47_21775 0.21 -0.7
99,218 - IAI47_21775 0.21 +0.4
99,219 + IAI47_21775 0.21 +0.6
99,219 + IAI47_21775 0.21 +2.8
99,219 + IAI47_21775 0.21 +1.3
99,219 + IAI47_21775 0.21 +0.3
99,219 + IAI47_21775 0.21 -0.5
99,219 + IAI47_21775 0.21 +0.4
99,219 + IAI47_21775 0.21 -1.1
99,219 + IAI47_21775 0.21 +1.5
99,219 + IAI47_21775 0.21 +0.3
99,220 - IAI47_21775 0.21 +0.2
99,220 - IAI47_21775 0.21 -1.4
99,220 - IAI47_21775 0.21 -1.3
99,265 + IAI47_21775 0.23 +0.8
99,265 + IAI47_21775 0.23 -0.5

Or see this region's nucleotide sequence