Strain Fitness in Pantoea sp. MT58 around IAI47_21545

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
48,219	-		IAI47_21540	0.67	+1.4
48,227	+		IAI47_21540	0.68	-1.2
48,227	+		IAI47_21540	0.68	-1.7
48,228	-		IAI47_21540	0.68	-0.2
48,233	-		IAI47_21540	0.68	-1.1
48,233	-		IAI47_21540	0.68	+0.2
48,251	+		IAI47_21540	0.70	+1.8
48,251	+		IAI47_21540	0.70	-1.6
48,252	-		IAI47_21540	0.70	-1.6
48,252	-		IAI47_21540	0.70	+1.2
48,284	+		IAI47_21540	0.73	-0.7
48,285	-		IAI47_21540	0.73	+0.3
48,313	+		IAI47_21540	0.76	+3.8
48,314	-		IAI47_21540	0.76	+0.4
48,314	-		IAI47_21540	0.76	+0.5
48,357	+		IAI47_21540	0.80	-0.5
48,357	+		IAI47_21540	0.80	+3.1
48,357	+		IAI47_21540	0.80	+0.2
48,357	+		IAI47_21540	0.80	-0.5
48,357	+		IAI47_21540	0.80	+1.5
48,358	-		IAI47_21540	0.80	-0.8
48,404	-		IAI47_21540	0.85	+0.6
48,421	+		IAI47_21540	0.86	-0.0
48,422	-		IAI47_21540	0.86	-1.1
48,460	+				+0.4
48,461	-				-0.5
48,461	-				+2.3
48,478	+				-0.5
48,479	-				-0.5
48,479	-				+2.4
48,537	+				-0.9
48,538	-				-0.8
48,538	-				+1.1
48,538	-				+0.5
48,551	+				-1.5
48,551	+				+1.8
48,551	+				+1.7
48,552	-				+0.2
48,602	+				+1.6
48,603	-				+1.2
48,632	+				+0.8
48,633	-				+1.1
48,633	-				+0.5
48,650	+				-1.6
48,650	+				+0.8
48,651	-				+0.0
48,663	+				+0.8
48,663	+				+0.6
48,664	-				+2.6
48,664	-				+1.2
48,664	-				-0.2
48,664	-				+0.8
48,680	+				+3.2
48,681	-				-0.5
48,681	-				-1.1
48,718	+				+1.2
48,729	-				+1.2
48,729	-				-0.0
48,738	+				-0.3
48,741	-				+0.2
48,742	-				-2.2
48,747	+				-0.4
48,747	+				+2.8
48,748	-				-1.4
48,748	-				-0.4
48,761	-				+0.3
48,772	+				-1.0
48,772	+				-0.0
48,772	+				-3.3
48,773	-				+0.2
48,773	-				-0.9
48,778	+				-0.7
48,828	+				-0.4
48,828	+				-1.5
48,836	+				+0.4
48,836	+				-1.0
48,837	-				-1.5
48,845	+				-1.1
48,863	+				-0.7
48,864	-				+0.5
48,864	-				+1.1
48,864	-				-1.3
48,876	+				+1.2
48,900	+				-1.1
48,901	-				-0.3
48,901	-				-1.0
48,938	+				-0.5
48,950	-				+0.5
48,955	+				-0.4
48,956	-				-1.4
49,034	-				+1.2
49,042	+				-1.2
49,064	+				+1.0
49,105	-				+0.6
49,113	+				+1.8
49,114	-				-0.9
49,156	-				-0.8
49,242	-		IAI47_21545	0.12	-1.4
49,263	-		IAI47_21545	0.17	-1.3
49,268	+		IAI47_21545	0.18	-1.0
49,270	+		IAI47_21545	0.18	-0.2
49,271	-		IAI47_21545	0.18	-2.0
49,357	+		IAI47_21545	0.37	-1.0
49,357	+		IAI47_21545	0.37	+1.7
49,357	+		IAI47_21545	0.37	-1.2
49,357	+		IAI47_21545	0.37	+1.5
49,357	+		IAI47_21545	0.37	-0.0
49,357	+		IAI47_21545	0.37	-1.3
49,358	-		IAI47_21545	0.37	-0.0
49,358	-		IAI47_21545	0.37	+0.2
49,359	+		IAI47_21545	0.37	+0.2
49,359	+		IAI47_21545	0.37	-2.3
49,359	+		IAI47_21545	0.37	+2.2
49,359	+		IAI47_21545	0.37	+0.7
49,360	-		IAI47_21545	0.37	-1.6
49,360	-		IAI47_21545	0.37	+1.9
49,360	-		IAI47_21545	0.37	-1.0
49,360	-		IAI47_21545	0.37	+0.5
49,360	-		IAI47_21545	0.37	+0.0
49,378	+		IAI47_21545	0.41	-1.1
49,397	+		IAI47_21545	0.45	-0.4
49,398	-		IAI47_21545	0.45	-0.8
49,424	+		IAI47_21545	0.51	-0.3
49,424	+		IAI47_21545	0.51	+0.2
49,424	+		IAI47_21545	0.51	-1.7
49,425	-		IAI47_21545	0.51	-0.5
49,425	-		IAI47_21545	0.51	-1.2
49,425	-		IAI47_21545	0.51	+0.8
49,499	+		IAI47_21545	0.67	-1.6
49,499	+		IAI47_21545	0.67	-0.7
49,500	-		IAI47_21545	0.67	-1.3
49,500	-		IAI47_21545	0.67	-1.0
49,500	-		IAI47_21545	0.67	-0.2
49,500	-		IAI47_21545	0.67	-0.5
49,500	-		IAI47_21545	0.67	-0.0
49,500	-		IAI47_21545	0.67	-0.4
49,502	+		IAI47_21545	0.67	+0.2
49,502	+		IAI47_21545	0.67	-0.3
49,502	+		IAI47_21545	0.67	-0.5
49,502	+		IAI47_21545	0.67	-1.0
49,503	-		IAI47_21545	0.68	+0.2
49,503	-		IAI47_21545	0.68	+0.9
49,503	-		IAI47_21545	0.68	-0.1
49,503	-		IAI47_21545	0.68	-1.5
49,503	-		IAI47_21545	0.68	-1.4
49,503	-		IAI47_21545	0.68	-0.0
49,525	-		IAI47_21545	0.72	-1.1
49,526	+		IAI47_21545	0.72	-0.5
49,527	-		IAI47_21545	0.73	+0.5
49,547	+		IAI47_21545	0.77	-0.5
49,548	-		IAI47_21545	0.77	-1.0
49,566	+		IAI47_21545	0.81	-1.2
49,566	+		IAI47_21545	0.81	-0.0
49,567	-		IAI47_21545	0.81	+0.1
49,568	+		IAI47_21545	0.81	-1.4
49,568	+		IAI47_21545	0.81	+0.3
49,568	+		IAI47_21545	0.81	-0.0
49,568	+		IAI47_21545	0.81	+2.8
49,568	+		IAI47_21545	0.81	+2.8
49,569	-		IAI47_21545	0.82	+1.2
49,569	-		IAI47_21545	0.82	-0.5
49,569	-		IAI47_21545	0.82	-0.0
49,569	-		IAI47_21545	0.82	-1.0
49,574	+		IAI47_21545	0.83	+0.8
49,574	+		IAI47_21545	0.83	+0.7
49,575	-		IAI47_21545	0.83	-2.3
49,575	-		IAI47_21545	0.83	-1.2
49,578	+		IAI47_21545	0.83	-0.5
49,579	-		IAI47_21545	0.84	-0.0
49,579	-		IAI47_21545	0.84	+0.1
49,653	+				+0.5
49,654	-				-1.1
49,677	-				+0.6
49,728	-				+0.7
49,732	+				+1.6
49,733	-				+0.9
49,733	-				-0.9
49,733	-				-0.3
49,734	+				+0.1
49,734	+				-0.2
49,734	+				-1.8
49,735	+				-1.9
49,735	-				-1.3
49,735	-				-1.2
49,735	-				+0.6
49,735	-				-0.8
49,782	+				+1.6
49,877	-				-0.4
49,887	+				-3.0
49,900	-				-0.5
49,918	+				-1.6
49,948	-				+0.4
49,948	-				-0.4
49,949	+				-1.2
49,949	+				-0.4
49,950	-				+0.8
49,950	-				-1.5
49,954	-				-1.0
49,964	-				+1.3
49,994	-				+0.6
50,000	+				+0.9
50,020	+				-0.2
50,020	+				+0.0
50,021	-				+1.5
50,021	-				+0.5
50,021	-				-1.1
50,021	-				+0.5
50,021	-				+0.8
50,021	-				-2.1
50,024	+				-0.5
50,024	+				-1.5
50,025	-				+1.0
50,025	-				-1.4
50,031	+				-0.8
50,044	+				+1.3
50,044	+				+0.3
50,045	-				-0.0
50,045	-				-1.4
50,045	-				+0.8
50,045	-				+0.1
50,045	-				-1.3
50,153	+		IAI47_21550	0.17	+0.5
50,154	-		IAI47_21550	0.17	-0.4
50,201	+		IAI47_21550	0.21	-1.0
50,202	-		IAI47_21550	0.21	-1.5
50,202	-		IAI47_21550	0.21	-1.0
50,207	-		IAI47_21550	0.21	+1.8
50,264	+		IAI47_21550	0.26	+0.5
50,265	-		IAI47_21550	0.26	-1.2
50,383	-		IAI47_21550	0.36	-1.2
50,383	-		IAI47_21550	0.36	-0.4
50,392	+		IAI47_21550	0.36	-0.2
50,392	+		IAI47_21550	0.36	+0.3
50,393	-		IAI47_21550	0.36	+2.0
50,426	+		IAI47_21550	0.39	+3.5
50,426	+		IAI47_21550	0.39	+0.8
50,426	+		IAI47_21550	0.39	-2.0
50,426	+		IAI47_21550	0.39	-0.8
50,427	-		IAI47_21550	0.39	+0.2
50,427	-		IAI47_21550	0.39	-1.1
50,427	-		IAI47_21550	0.39	-0.4
50,427	-		IAI47_21550	0.39	-1.7
50,427	-		IAI47_21550	0.39	-2.1
50,439	-		IAI47_21550	0.40	+0.1
50,439	-		IAI47_21550	0.40	+0.5
50,439	-		IAI47_21550	0.40	-1.4
50,439	-		IAI47_21550	0.40	+0.6
50,439	-		IAI47_21550	0.40	+1.2
50,439	-		IAI47_21550	0.40	-1.5
50,440	+		IAI47_21550	0.40	+0.5
50,441	-		IAI47_21550	0.40	-0.2
50,459	+		IAI47_21550	0.42	+0.5
50,459	+		IAI47_21550	0.42	+0.8
50,459	+		IAI47_21550	0.42	-0.0
50,459	+		IAI47_21550	0.42	-1.1
50,460	-		IAI47_21550	0.42	-1.1
50,460	-		IAI47_21550	0.42	-0.3
50,460	-		IAI47_21550	0.42	-0.4
50,460	-		IAI47_21550	0.42	+1.5
50,460	-		IAI47_21550	0.42	-1.9
50,462	+		IAI47_21550	0.42	+0.1
50,462	+		IAI47_21550	0.42	+3.8
50,463	-		IAI47_21550	0.42	-0.9
50,463	-		IAI47_21550	0.42	+0.6
50,463	-		IAI47_21550	0.42	+0.8
50,463	-		IAI47_21550	0.42	+0.5
50,463	-		IAI47_21550	0.42	-0.7
50,463	-		IAI47_21550	0.42	+1.6
50,463	-		IAI47_21550	0.42	-0.9
50,463	-		IAI47_21550	0.42	+0.5
50,463	-		IAI47_21550	0.42	-0.8
50,463	-		IAI47_21550	0.42	-1.1
50,472	+		IAI47_21550	0.43	-0.7
50,473	-		IAI47_21550	0.43	-1.9
50,473	-		IAI47_21550	0.43	-0.9
50,487	+		IAI47_21550	0.44	+0.8
50,511	+		IAI47_21550	0.46	-0.8
50,512	-		IAI47_21550	0.46	-1.0
50,532	+		IAI47_21550	0.48	-0.8
50,532	+		IAI47_21550	0.48	-1.4
50,532	+		IAI47_21550	0.48	+0.7
50,532	+		IAI47_21550	0.48	-0.4
50,532	+		IAI47_21550	0.48	-0.5
50,533	-		IAI47_21550	0.48	+0.7
50,533	-		IAI47_21550	0.48	+0.4
50,533	-		IAI47_21550	0.48	-1.8
50,533	-		IAI47_21550	0.48	-0.7
50,533	-		IAI47_21550	0.48	+0.0
50,533	-		IAI47_21550	0.48	-0.2
50,533	-		IAI47_21550	0.48	-0.2
50,533	-		IAI47_21550	0.48	+0.7
50,543	-		IAI47_21550	0.49	+2.0
50,543	-		IAI47_21550	0.49	+3.8
50,543	-		IAI47_21550	0.49	+1.0
50,543	-		IAI47_21550	0.49	+0.5
50,627	+		IAI47_21550	0.56	-0.2
50,628	-		IAI47_21550	0.56	+0.3