Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20535 and IAI47_20540 are separated by 85 nucleotides IAI47_20540 and IAI47_20545 overlap by 11 nucleotides IAI47_20545 and IAI47_20550 are separated by 230 nucleotides IAI47_20550 and IAI47_20555 overlap by 13 nucleotides
IAI47_20535: IAI47_20535 - maltose ABC transporter permease MalG, at 357,503 to 358,393
_20535
IAI47_20540: IAI47_20540 - TetR/AcrR family transcriptional regulator, at 358,479 to 359,087
_20540
IAI47_20545: IAI47_20545 - NAD(P)H-dependent oxidoreductase, at 359,077 to 359,679
_20545
IAI47_20550: IAI47_20550 - ABC transporter permease, at 359,910 to 360,578
_20550
IAI47_20555: IAI47_20555 - ATP-binding cassette domain-containing protein, at 360,566 to 361,354
_20555
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 358.160 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.229 kb on + strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.274 kb on + strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.360 kb on - strand at 358.391 kb on + strand at 358.392 kb on - strand at 358.392 kb on - strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.422 kb on + strand at 358.422 kb on + strand at 358.423 kb on - strand at 358.423 kb on - strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.650 kb on - strand, within IAI47_20540 at 358.650 kb on - strand, within IAI47_20540 at 358.697 kb on - strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.930 kb on + strand, within IAI47_20540 at 358.931 kb on - strand, within IAI47_20540 at 359.071 kb on - strand at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.170 kb on + strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.383 kb on + strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.420 kb on + strand, within IAI47_20545 at 359.421 kb on - strand, within IAI47_20545 at 359.598 kb on + strand, within IAI47_20545 at 359.599 kb on - strand, within IAI47_20545 at 359.665 kb on + strand at 359.665 kb on + strand at 359.665 kb on + strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.692 kb on - strand at 359.692 kb on - strand at 359.729 kb on - strand at 359.734 kb on + strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.840 kb on - strand at 359.902 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.920 kb on + strand at 359.968 kb on - strand at 360.026 kb on - strand, within IAI47_20550 at 360.171 kb on - strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.333 kb on - strand, within IAI47_20550 at 360.384 kb on - strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.396 kb on - strand, within IAI47_20550 at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.563 kb on + strand at 360.563 kb on + strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.585 kb on - strand at 360.600 kb on + strand at 360.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 358,160 - IAI47_20535 0.74 +0.8 358,160 - IAI47_20535 0.74 -2.1 358,229 + IAI47_20535 0.81 +1.3 358,230 - IAI47_20535 0.82 +1.7 358,230 - IAI47_20535 0.82 -0.0 358,256 + IAI47_20535 0.85 +1.2 358,256 + IAI47_20535 0.85 -0.8 358,256 + IAI47_20535 0.85 +1.8 358,257 - IAI47_20535 0.85 -2.3 358,257 - IAI47_20535 0.85 -0.4 358,257 - IAI47_20535 0.85 -0.3 358,274 + IAI47_20535 0.87 -0.0 358,275 - IAI47_20535 0.87 +0.3 358,275 - IAI47_20535 0.87 +0.8 358,275 - IAI47_20535 0.87 -1.0 358,275 - IAI47_20535 0.87 -1.4 358,360 - +1.6 358,391 + +0.4 358,392 - -0.0 358,392 - -0.0 358,407 + -0.1 358,407 + +0.8 358,407 + -0.1 358,408 - -0.7 358,408 - +0.5 358,408 - -0.7 358,408 - -0.8 358,422 + +0.7 358,422 + -1.0 358,423 - +0.9 358,423 - -0.5 358,480 + +0.6 358,480 + -2.8 358,480 + -2.1 358,480 + +0.7 358,480 + -0.1 358,481 - +0.6 358,481 - +1.2 358,481 - +0.2 358,481 - +0.7 358,500 - -0.4 358,500 - -0.0 358,500 - +2.0 358,650 - IAI47_20540 0.28 +1.4 358,650 - IAI47_20540 0.28 -0.9 358,697 - IAI47_20540 0.36 +1.0 358,789 + IAI47_20540 0.51 -0.7 358,789 + IAI47_20540 0.51 +0.2 358,789 + IAI47_20540 0.51 -0.3 358,789 + IAI47_20540 0.51 -1.3 358,888 + IAI47_20540 0.67 -2.1 358,888 + IAI47_20540 0.67 -1.8 358,889 - IAI47_20540 0.67 +1.9 358,889 - IAI47_20540 0.67 -1.9 358,889 - IAI47_20540 0.67 +0.1 358,930 + IAI47_20540 0.74 +0.4 358,931 - IAI47_20540 0.74 -0.2 359,071 - -0.8 359,138 + IAI47_20545 0.10 -1.4 359,138 + IAI47_20545 0.10 -0.1 359,138 + IAI47_20545 0.10 -1.4 359,138 + IAI47_20545 0.10 -0.4 359,138 + IAI47_20545 0.10 +0.3 359,139 - IAI47_20545 0.10 -0.4 359,139 - IAI47_20545 0.10 +2.1 359,170 + IAI47_20545 0.15 -1.9 359,171 - IAI47_20545 0.16 +0.2 359,171 - IAI47_20545 0.16 -0.1 359,171 - IAI47_20545 0.16 +2.9 359,171 - IAI47_20545 0.16 +0.6 359,383 + IAI47_20545 0.51 -1.2 359,384 - IAI47_20545 0.51 +0.7 359,384 - IAI47_20545 0.51 +1.6 359,384 - IAI47_20545 0.51 -0.3 359,384 - IAI47_20545 0.51 +1.2 359,420 + IAI47_20545 0.57 -1.9 359,421 - IAI47_20545 0.57 +2.4 359,598 + IAI47_20545 0.86 +2.4 359,599 - IAI47_20545 0.87 +1.1 359,665 + -0.8 359,665 + -0.8 359,665 + +1.0 359,666 - +1.6 359,666 - -0.1 359,666 - -2.0 359,666 - +1.8 359,666 - -1.4 359,668 + -1.1 359,668 + +0.4 359,668 + -0.7 359,669 - -0.9 359,669 - -2.3 359,669 - +1.8 359,669 - +0.8 359,669 - +2.9 359,669 - -0.2 359,669 - -1.7 359,691 + +0.6 359,691 + -2.3 359,691 + +0.2 359,692 - +0.3 359,692 - +1.4 359,729 - +0.1 359,734 + +0.2 359,756 - +2.1 359,756 - +0.2 359,756 - +0.1 359,840 - -2.3 359,902 + -1.6 359,904 + -0.7 359,905 - -0.9 359,905 - -0.9 359,911 + +0.9 359,911 + +0.5 359,912 - -0.5 359,920 + -0.4 359,968 - +1.7 360,026 - IAI47_20550 0.17 -0.4 360,171 - IAI47_20550 0.39 -0.9 360,195 + IAI47_20550 0.43 -0.3 360,195 + IAI47_20550 0.43 +0.2 360,196 - IAI47_20550 0.43 -0.1 360,196 - IAI47_20550 0.43 -0.0 360,196 - IAI47_20550 0.43 +2.6 360,196 - IAI47_20550 0.43 -1.2 360,196 - IAI47_20550 0.43 -1.4 360,248 + IAI47_20550 0.51 +2.0 360,248 + IAI47_20550 0.51 +0.5 360,333 - IAI47_20550 0.63 +0.6 360,384 - IAI47_20550 0.71 +1.2 360,395 + IAI47_20550 0.72 -1.4 360,395 + IAI47_20550 0.72 -0.8 360,396 - IAI47_20550 0.73 -0.6 360,514 + -0.1 360,514 + -0.5 360,514 + -2.1 360,514 + -1.2 360,515 - -1.0 360,515 - +2.5 360,515 - -0.7 360,515 - -2.6 360,515 - +1.0 360,515 - -0.6 360,515 - -1.7 360,515 - +2.0 360,563 + +0.4 360,563 + +0.2 360,564 - -0.6 360,564 - -0.5 360,564 - +3.1 360,564 - -2.0 360,572 + -0.1 360,572 + +0.1 360,572 + +2.1 360,573 - +0.2 360,573 - +0.1 360,573 - +1.5 360,573 - -0.6 360,585 - -1.1 360,600 + -1.4 360,601 - -1.2
Or see this region's nucleotide sequence