Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19215 and IAI47_19220 are separated by 495 nucleotides IAI47_19220 and IAI47_19225 are separated by 18 nucleotides IAI47_19225 and IAI47_19230 are separated by 24 nucleotides
IAI47_19215: IAI47_19215 - hypothetical protein, at 69,934 to 70,905
_19215
IAI47_19220: IAI47_19220 - PTS galactitol transporter subunit IIA, at 71,401 to 71,850
_19220
IAI47_19225: IAI47_19225 - PTS sugar transporter subunit IIB, at 71,869 to 72,162
_19225
IAI47_19230: IAI47_19230 - PTS galactitol transporter subunit IIC, at 72,187 to 73,440
_19230
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 70.907 kb on + strand at 70.908 kb on - strand at 70.908 kb on - strand at 70.908 kb on - strand at 70.914 kb on + strand at 70.915 kb on - strand at 70.965 kb on + strand at 71.121 kb on + strand at 71.121 kb on + strand at 71.122 kb on - strand at 71.122 kb on - strand at 71.130 kb on + strand at 71.157 kb on + strand at 71.179 kb on + strand at 71.179 kb on + strand at 71.180 kb on - strand at 71.180 kb on - strand at 71.227 kb on + strand at 71.335 kb on + strand at 71.336 kb on - strand at 71.397 kb on + strand at 71.397 kb on + strand at 71.397 kb on + strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.501 kb on + strand, within IAI47_19220 at 71.501 kb on + strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.513 kb on - strand, within IAI47_19220 at 71.513 kb on - strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.573 kb on - strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.627 kb on - strand, within IAI47_19220 at 71.627 kb on - strand, within IAI47_19220 at 71.761 kb on - strand, within IAI47_19220 at 71.782 kb on + strand, within IAI47_19220 at 71.829 kb on + strand at 71.841 kb on + strand at 71.849 kb on - strand at 71.874 kb on + strand at 71.875 kb on - strand at 71.877 kb on + strand at 71.877 kb on + strand at 71.878 kb on - strand at 71.886 kb on - strand at 71.934 kb on + strand, within IAI47_19225 at 71.935 kb on - strand, within IAI47_19225 at 71.953 kb on + strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.959 kb on - strand, within IAI47_19225 at 71.976 kb on + strand, within IAI47_19225 at 72.011 kb on + strand, within IAI47_19225 at 72.012 kb on - strand, within IAI47_19225 at 72.033 kb on - strand, within IAI47_19225 at 72.042 kb on + strand, within IAI47_19225 at 72.042 kb on + strand, within IAI47_19225 at 72.043 kb on - strand, within IAI47_19225 at 72.046 kb on + strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.049 kb on - strand, within IAI47_19225 at 72.049 kb on - strand, within IAI47_19225 at 72.103 kb on - strand, within IAI47_19225 at 72.103 kb on - strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.112 kb on - strand, within IAI47_19225 at 72.112 kb on - strand, within IAI47_19225 at 72.160 kb on + strand at 72.160 kb on + strand at 72.161 kb on - strand at 72.161 kb on - strand at 72.161 kb on - strand at 72.171 kb on + strand at 72.171 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.261 kb on + strand at 72.304 kb on - strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.314 kb on + strand, within IAI47_19230 at 72.315 kb on - strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.335 kb on + strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.342 kb on - strand, within IAI47_19230 at 72.347 kb on + strand, within IAI47_19230 at 72.385 kb on - strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.394 kb on + strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.418 kb on - strand, within IAI47_19230 at 72.499 kb on - strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.566 kb on - strand, within IAI47_19230 at 72.566 kb on - strand, within IAI47_19230 at 72.598 kb on + strand, within IAI47_19230 at 72.654 kb on + strand, within IAI47_19230 at 72.655 kb on - strand, within IAI47_19230 at 72.700 kb on + strand, within IAI47_19230 at 72.700 kb on + strand, within IAI47_19230 at 72.701 kb on - strand, within IAI47_19230 at 72.726 kb on + strand, within IAI47_19230 at 72.727 kb on - strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.768 kb on + strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.771 kb on - strand, within IAI47_19230 at 72.777 kb on + strand, within IAI47_19230 at 72.793 kb on - strand, within IAI47_19230 at 72.812 kb on + strand, within IAI47_19230 at 72.813 kb on - strand, within IAI47_19230 at 72.870 kb on + strand, within IAI47_19230 at 72.871 kb on - strand, within IAI47_19230 at 72.925 kb on - strand, within IAI47_19230 at 72.930 kb on - strand, within IAI47_19230 at 73.098 kb on - strand, within IAI47_19230 at 73.131 kb on + strand, within IAI47_19230 at 73.132 kb on - strand, within IAI47_19230
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 70,907 + +3.0 70,908 - -0.8 70,908 - -0.4 70,908 - +2.8 70,914 + -1.1 70,915 - +0.5 70,965 + +1.5 71,121 + +0.2 71,121 + +1.6 71,122 - +0.5 71,122 - +0.2 71,130 + +0.6 71,157 + +1.5 71,179 + -0.0 71,179 + -0.1 71,180 - +0.3 71,180 - -1.7 71,227 + -0.3 71,335 + +0.7 71,336 - +0.5 71,397 + -0.7 71,397 + +0.5 71,397 + +0.7 71,398 - +1.8 71,398 - +0.9 71,398 - +1.8 71,399 + +0.3 71,399 + -1.5 71,399 + +1.6 71,399 + -0.2 71,400 - -0.9 71,400 - -1.2 71,400 - -1.7 71,400 - +0.1 71,412 - -1.0 71,412 - -0.0 71,469 + IAI47_19220 0.15 +4.2 71,469 + IAI47_19220 0.15 +0.6 71,469 + IAI47_19220 0.15 +2.1 71,469 + IAI47_19220 0.15 -0.8 71,469 + IAI47_19220 0.15 -0.9 71,469 + IAI47_19220 0.15 +0.5 71,470 - IAI47_19220 0.15 +0.4 71,470 - IAI47_19220 0.15 +0.8 71,470 - IAI47_19220 0.15 +0.2 71,470 - IAI47_19220 0.15 -0.4 71,501 + IAI47_19220 0.22 -1.4 71,501 + IAI47_19220 0.22 +0.8 71,502 - IAI47_19220 0.22 +0.5 71,502 - IAI47_19220 0.22 -1.3 71,502 - IAI47_19220 0.22 -1.8 71,512 + IAI47_19220 0.25 -1.0 71,512 + IAI47_19220 0.25 +0.7 71,512 + IAI47_19220 0.25 +0.2 71,513 - IAI47_19220 0.25 +1.8 71,513 - IAI47_19220 0.25 +0.2 71,545 + IAI47_19220 0.32 +2.8 71,545 + IAI47_19220 0.32 +0.9 71,545 + IAI47_19220 0.32 -0.4 71,546 - IAI47_19220 0.32 +1.3 71,546 - IAI47_19220 0.32 +0.3 71,546 - IAI47_19220 0.32 -2.8 71,546 - IAI47_19220 0.32 +0.2 71,556 + IAI47_19220 0.34 +0.6 71,556 + IAI47_19220 0.34 +1.5 71,556 + IAI47_19220 0.34 -2.2 71,557 - IAI47_19220 0.35 -0.6 71,557 - IAI47_19220 0.35 +0.2 71,557 - IAI47_19220 0.35 +1.5 71,573 - IAI47_19220 0.38 +1.2 71,626 + IAI47_19220 0.50 -0.8 71,626 + IAI47_19220 0.50 +3.4 71,626 + IAI47_19220 0.50 +1.1 71,627 - IAI47_19220 0.50 -2.4 71,627 - IAI47_19220 0.50 +1.1 71,761 - IAI47_19220 0.80 +0.3 71,782 + IAI47_19220 0.85 -1.0 71,829 + -0.5 71,841 + -0.9 71,849 - +0.5 71,874 + +2.1 71,875 - -0.3 71,877 + +0.2 71,877 + +2.0 71,878 - +1.4 71,886 - -0.7 71,934 + IAI47_19225 0.22 -1.0 71,935 - IAI47_19225 0.22 +1.2 71,953 + IAI47_19225 0.29 -0.3 71,954 - IAI47_19225 0.29 -0.0 71,954 - IAI47_19225 0.29 -0.5 71,954 - IAI47_19225 0.29 +2.4 71,958 + IAI47_19225 0.30 -0.6 71,958 + IAI47_19225 0.30 -1.4 71,958 + IAI47_19225 0.30 +0.5 71,958 + IAI47_19225 0.30 -0.5 71,959 - IAI47_19225 0.31 +0.5 71,976 + IAI47_19225 0.36 +0.5 72,011 + IAI47_19225 0.48 -2.0 72,012 - IAI47_19225 0.49 -2.7 72,033 - IAI47_19225 0.56 +1.2 72,042 + IAI47_19225 0.59 -1.4 72,042 + IAI47_19225 0.59 +0.2 72,043 - IAI47_19225 0.59 +0.7 72,046 + IAI47_19225 0.60 -0.8 72,047 - IAI47_19225 0.61 -0.1 72,047 - IAI47_19225 0.61 +0.3 72,047 - IAI47_19225 0.61 -0.8 72,049 - IAI47_19225 0.61 -0.2 72,049 - IAI47_19225 0.61 -1.6 72,103 - IAI47_19225 0.80 +1.0 72,103 - IAI47_19225 0.80 +2.2 72,111 + IAI47_19225 0.82 +3.0 72,111 + IAI47_19225 0.82 -0.7 72,111 + IAI47_19225 0.82 -2.6 72,112 - IAI47_19225 0.83 -0.4 72,112 - IAI47_19225 0.83 -1.1 72,160 + +0.6 72,160 + -0.4 72,161 - -0.2 72,161 - +0.2 72,161 - +1.4 72,171 + -0.5 72,171 + +0.2 72,204 + +1.3 72,204 + -1.0 72,204 + -2.5 72,204 + -1.4 72,204 + +0.1 72,205 - -0.0 72,205 - +0.6 72,206 + -1.8 72,206 + -1.5 72,206 + -2.1 72,206 + +0.2 72,206 + +1.8 72,207 - +1.9 72,207 - +0.2 72,207 - +0.3 72,207 - +0.8 72,207 - -1.7 72,207 - +2.4 72,218 + +0.6 72,218 + +0.8 72,219 - +1.1 72,219 - +1.7 72,219 - -0.4 72,219 - +1.5 72,261 + +3.8 72,304 - -2.2 72,312 + +1.8 72,312 + -0.8 72,312 + -0.7 72,312 + +0.6 72,312 + -0.4 72,314 + IAI47_19230 0.10 +0.7 72,315 - IAI47_19230 0.10 -1.8 72,320 + IAI47_19230 0.11 +0.3 72,320 + IAI47_19230 0.11 -2.4 72,320 + IAI47_19230 0.11 +2.7 72,320 + IAI47_19230 0.11 -1.2 72,320 + IAI47_19230 0.11 +1.2 72,320 + IAI47_19230 0.11 -0.5 72,320 + IAI47_19230 0.11 -1.1 72,320 + IAI47_19230 0.11 -1.0 72,321 - IAI47_19230 0.11 +0.6 72,321 - IAI47_19230 0.11 -0.7 72,321 - IAI47_19230 0.11 -1.0 72,321 - IAI47_19230 0.11 +0.8 72,335 + IAI47_19230 0.12 +4.6 72,336 - IAI47_19230 0.12 -0.6 72,336 - IAI47_19230 0.12 -0.3 72,336 - IAI47_19230 0.12 -0.5 72,342 - IAI47_19230 0.12 -2.7 72,347 + IAI47_19230 0.13 -0.7 72,385 - IAI47_19230 0.16 +2.4 72,391 + IAI47_19230 0.16 +0.3 72,391 + IAI47_19230 0.16 +0.7 72,391 + IAI47_19230 0.16 -0.0 72,391 + IAI47_19230 0.16 -0.0 72,394 + IAI47_19230 0.17 -0.2 72,395 - IAI47_19230 0.17 -0.2 72,395 - IAI47_19230 0.17 -1.8 72,395 - IAI47_19230 0.17 -0.8 72,418 - IAI47_19230 0.18 -1.0 72,499 - IAI47_19230 0.25 -1.7 72,565 + IAI47_19230 0.30 -0.2 72,565 + IAI47_19230 0.30 +1.2 72,565 + IAI47_19230 0.30 +0.5 72,566 - IAI47_19230 0.30 -0.0 72,566 - IAI47_19230 0.30 +1.9 72,598 + IAI47_19230 0.33 +1.0 72,654 + IAI47_19230 0.37 -0.5 72,655 - IAI47_19230 0.37 +0.5 72,700 + IAI47_19230 0.41 -0.7 72,700 + IAI47_19230 0.41 -1.3 72,701 - IAI47_19230 0.41 -0.1 72,726 + IAI47_19230 0.43 -0.8 72,727 - IAI47_19230 0.43 +0.5 72,741 + IAI47_19230 0.44 -0.3 72,741 + IAI47_19230 0.44 +1.4 72,741 + IAI47_19230 0.44 +1.2 72,742 - IAI47_19230 0.44 +1.4 72,742 - IAI47_19230 0.44 -0.4 72,742 - IAI47_19230 0.44 -0.4 72,768 + IAI47_19230 0.46 -0.8 72,769 - IAI47_19230 0.46 +1.8 72,769 - IAI47_19230 0.46 +1.0 72,769 - IAI47_19230 0.46 -2.1 72,770 + IAI47_19230 0.46 +0.1 72,770 + IAI47_19230 0.46 +1.2 72,770 + IAI47_19230 0.46 +1.4 72,771 - IAI47_19230 0.47 +1.1 72,777 + IAI47_19230 0.47 -1.0 72,793 - IAI47_19230 0.48 +0.9 72,812 + IAI47_19230 0.50 +1.6 72,813 - IAI47_19230 0.50 +0.8 72,870 + IAI47_19230 0.54 +0.2 72,871 - IAI47_19230 0.55 +0.7 72,925 - IAI47_19230 0.59 +0.2 72,930 - IAI47_19230 0.59 +0.5 73,098 - IAI47_19230 0.73 -0.4 73,131 + IAI47_19230 0.75 +1.5 73,132 - IAI47_19230 0.75 +1.2
Or see this region's nucleotide sequence