Strain Fitness in Pantoea sp. MT58 around IAI47_15825

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,339,926	+		IAI47_15820	0.41	-0.7
3,339,926	+		IAI47_15820	0.41	-1.5
3,339,926	+		IAI47_15820	0.41	+0.7
3,339,996	+		IAI47_15820	0.46	+1.8
3,339,996	+		IAI47_15820	0.46	+1.3
3,339,997	-		IAI47_15820	0.46	-0.6
3,339,997	-		IAI47_15820	0.46	+1.2
3,339,997	-		IAI47_15820	0.46	+0.8
3,340,032	+		IAI47_15820	0.48	+0.9
3,340,032	+		IAI47_15820	0.48	-1.5
3,340,114	+		IAI47_15820	0.54	+1.3
3,340,115	-		IAI47_15820	0.54	-0.9
3,340,191	+		IAI47_15820	0.60	+0.7
3,340,191	+		IAI47_15820	0.60	-0.8
3,340,192	-		IAI47_15820	0.60	-0.6
3,340,234	-		IAI47_15820	0.63	+1.4
3,340,267	+		IAI47_15820	0.66	-0.6
3,340,267	+		IAI47_15820	0.66	+0.3
3,340,267	+		IAI47_15820	0.66	+1.2
3,340,267	+		IAI47_15820	0.66	-0.1
3,340,268	-		IAI47_15820	0.66	+1.0
3,340,268	-		IAI47_15820	0.66	-1.7
3,340,269	+		IAI47_15820	0.66	-1.4
3,340,269	+		IAI47_15820	0.66	+0.0
3,340,269	+		IAI47_15820	0.66	-0.1
3,340,270	-		IAI47_15820	0.66	-1.2
3,340,270	-		IAI47_15820	0.66	-0.8
3,340,270	-		IAI47_15820	0.66	-0.2
3,340,270	-		IAI47_15820	0.66	+0.3
3,340,283	-		IAI47_15820	0.67	-1.4
3,340,283	-		IAI47_15820	0.67	-1.9
3,340,287	+		IAI47_15820	0.67	-1.1
3,340,287	+		IAI47_15820	0.67	+2.2
3,340,287	+		IAI47_15820	0.67	+0.4
3,340,364	+		IAI47_15820	0.73	+0.3
3,340,399	-		IAI47_15820	0.75	+3.6
3,340,399	-		IAI47_15820	0.75	-2.0
3,340,399	-		IAI47_15820	0.75	-0.6
3,340,423	+		IAI47_15820	0.77	+1.8
3,340,423	+		IAI47_15820	0.77	+0.2
3,340,423	+		IAI47_15820	0.77	+0.6
3,340,423	+		IAI47_15820	0.77	+1.0
3,340,423	+		IAI47_15820	0.77	+0.9
3,340,424	-		IAI47_15820	0.77	+0.6
3,340,424	-		IAI47_15820	0.77	+2.8
3,340,424	-		IAI47_15820	0.77	-1.9
3,340,424	-		IAI47_15820	0.77	-1.7
3,340,424	-		IAI47_15820	0.77	-0.3
3,340,527	+		IAI47_15820	0.85	-0.1
3,340,527	+		IAI47_15820	0.85	+0.6
3,340,528	-		IAI47_15820	0.85	+0.6
3,340,528	-		IAI47_15820	0.85	-0.1
3,340,528	-		IAI47_15820	0.85	-0.8
3,340,561	-		IAI47_15820	0.87	-1.3
3,340,561	-		IAI47_15820	0.87	-1.5
3,340,573	+		IAI47_15820	0.88	-1.2
3,340,573	+		IAI47_15820	0.88	+0.3
3,340,573	+		IAI47_15820	0.88	-2.2
3,340,584	+		IAI47_15820	0.89	-1.3
3,340,584	+		IAI47_15820	0.89	+0.2
3,340,585	-		IAI47_15820	0.89	-0.7
3,340,622	+				-1.1
3,340,699	+				+0.8
3,340,699	+				+0.7
3,340,699	+				-0.1
3,340,699	+				+0.6
3,340,700	-				+1.8
3,340,700	-				-2.2
3,340,700	-				-1.7
3,340,704	+				+0.7
3,340,705	-				-0.0
3,340,707	+				-0.6
3,340,707	+				+0.5
3,340,737	+				+1.6
3,340,738	-				+1.3
3,340,738	-				-0.4
3,340,738	-				-0.8
3,340,738	-				-1.6
3,340,740	+				+1.4
3,340,740	+				+0.8
3,340,740	+				-1.2
3,340,740	+				-1.2
3,340,741	-				+1.1
3,340,741	-				+0.4
3,340,741	-				-1.2
3,340,741	-				-2.2
3,340,741	-				+0.2
3,340,741	-				-0.5
3,340,741	-				+0.6
3,340,741	-				-0.2
3,340,775	+				-2.2
3,340,775	+				-1.2
3,340,776	-				+1.8
3,340,776	-				+0.8
3,340,776	-				-1.3
3,340,875	+				-0.3
3,340,875	+				-0.9
3,340,875	+				+0.6
3,340,876	-				-2.0
3,340,906	-				+0.2
3,340,906	-				+0.7
3,340,906	-				-0.2
3,340,906	-				+0.2
3,340,906	-				-0.7
3,340,919	+				-2.0
3,340,919	+				+0.3
3,340,919	+				+0.9
3,340,919	+				+0.8
3,340,919	+				-0.8
3,340,919	+				+1.5
3,340,919	+				-1.1
3,340,920	-				+0.6
3,340,920	-				-0.5
3,341,010	+				+0.3
3,341,010	+				-1.2
3,341,011	-				+1.8
3,341,011	-				+0.7
3,341,011	-				+2.4
3,341,016	+				+1.4
3,341,016	+				+0.1
3,341,016	+				+1.3
3,341,016	+				-1.6
3,341,016	+				+0.1
3,341,016	+				+0.6
3,341,016	+				+0.1
3,341,017	-				-1.4
3,341,017	-				-1.8
3,341,017	-				-0.4
3,341,017	-				+1.4
3,341,017	-				-0.2
3,341,017	-				-0.3
3,341,017	-				+0.6
3,341,017	-				-0.9
3,341,017	-				-0.5
3,341,017	-				-0.2
3,341,017	-				-0.8
3,341,019	-				+0.9
3,341,102	+		IAI47_15825	0.14	+1.8
3,341,178	+		IAI47_15825	0.19	-1.2
3,341,178	+		IAI47_15825	0.19	-1.9
3,341,178	+		IAI47_15825	0.19	+3.1
3,341,178	+		IAI47_15825	0.19	+1.0
3,341,178	+		IAI47_15825	0.19	+0.2
3,341,178	+		IAI47_15825	0.19	+0.3
3,341,179	-		IAI47_15825	0.19	+1.5
3,341,179	-		IAI47_15825	0.19	+0.7
3,341,179	-		IAI47_15825	0.19	+0.4
3,341,179	-		IAI47_15825	0.19	-1.8
3,341,223	+		IAI47_15825	0.22	+0.9
3,341,223	+		IAI47_15825	0.22	+0.7
3,341,223	+		IAI47_15825	0.22	+0.5
3,341,223	+		IAI47_15825	0.22	+0.6
3,341,223	+		IAI47_15825	0.22	+0.1
3,341,224	-		IAI47_15825	0.22	-0.4
3,341,224	-		IAI47_15825	0.22	+0.5
3,341,224	-		IAI47_15825	0.22	-1.3
3,341,256	+		IAI47_15825	0.24	-0.7
3,341,256	+		IAI47_15825	0.24	+1.3
3,341,256	+		IAI47_15825	0.24	-1.2
3,341,257	-		IAI47_15825	0.24	+0.5
3,341,257	-		IAI47_15825	0.24	-0.8
3,341,257	-		IAI47_15825	0.24	-1.5
3,341,277	+		IAI47_15825	0.26	+1.3
3,341,277	+		IAI47_15825	0.26	-0.2
3,341,277	+		IAI47_15825	0.26	-0.3
3,341,277	+		IAI47_15825	0.26	+1.9
3,341,277	+		IAI47_15825	0.26	+0.6
3,341,277	+		IAI47_15825	0.26	-1.8
3,341,277	+		IAI47_15825	0.26	+0.3
3,341,278	-		IAI47_15825	0.26	+2.2
3,341,278	-		IAI47_15825	0.26	-0.4
3,341,278	-		IAI47_15825	0.26	-0.5
3,341,278	-		IAI47_15825	0.26	+1.4
3,341,278	-		IAI47_15825	0.26	-0.3
3,341,279	+		IAI47_15825	0.26	+0.9
3,341,288	+		IAI47_15825	0.27	+0.4
3,341,288	+		IAI47_15825	0.27	-0.1
3,341,288	+		IAI47_15825	0.27	+1.0
3,341,289	-		IAI47_15825	0.27	+2.2
3,341,291	+		IAI47_15825	0.27	+0.3
3,341,291	+		IAI47_15825	0.27	-0.2
3,341,292	-		IAI47_15825	0.27	+3.0
3,341,292	-		IAI47_15825	0.27	+1.5
3,341,292	-		IAI47_15825	0.27	-0.3
3,341,292	-		IAI47_15825	0.27	-1.8
3,341,299	-		IAI47_15825	0.27	+1.8
3,341,299	-		IAI47_15825	0.27	+1.4
3,341,321	+		IAI47_15825	0.29	-0.6
3,341,321	+		IAI47_15825	0.29	-0.7
3,341,321	+		IAI47_15825	0.29	+3.3
3,341,321	+		IAI47_15825	0.29	-1.2
3,341,322	-		IAI47_15825	0.29	-1.8
3,341,322	-		IAI47_15825	0.29	+2.3
3,341,358	+		IAI47_15825	0.32	+2.4
3,341,378	+		IAI47_15825	0.33	+1.1
3,341,392	+		IAI47_15825	0.34	+1.3
3,341,392	+		IAI47_15825	0.34	+2.6
3,341,392	+		IAI47_15825	0.34	-1.7
3,341,393	-		IAI47_15825	0.34	+2.5
3,341,393	-		IAI47_15825	0.34	+0.6
3,341,441	+		IAI47_15825	0.38	+0.0
3,341,441	+		IAI47_15825	0.38	+1.6
3,341,531	+		IAI47_15825	0.44	+1.0
3,341,532	-		IAI47_15825	0.44	+2.5
3,341,630	+		IAI47_15825	0.51	-0.7
3,341,631	-		IAI47_15825	0.51	-1.3
3,341,631	-		IAI47_15825	0.51	+0.6
3,341,670	+		IAI47_15825	0.54	-1.3
3,341,670	+		IAI47_15825	0.54	+0.6
3,341,670	+		IAI47_15825	0.54	+2.3
3,341,670	+		IAI47_15825	0.54	-2.6
3,341,670	+		IAI47_15825	0.54	+1.2
3,341,670	+		IAI47_15825	0.54	-0.1
3,341,670	+		IAI47_15825	0.54	-0.1
3,341,670	+		IAI47_15825	0.54	-0.0
3,341,670	+		IAI47_15825	0.54	-2.0
3,341,670	+		IAI47_15825	0.54	-0.6
3,341,670	+		IAI47_15825	0.54	-0.8
3,341,670	+		IAI47_15825	0.54	+1.9
3,341,670	+		IAI47_15825	0.54	+0.8
3,341,670	+		IAI47_15825	0.54	-0.5
3,341,671	-		IAI47_15825	0.54	+0.1
3,341,671	-		IAI47_15825	0.54	+1.0
3,341,671	-		IAI47_15825	0.54	-1.6
3,341,671	-		IAI47_15825	0.54	+0.5
3,341,671	-		IAI47_15825	0.54	-0.1
3,341,671	-		IAI47_15825	0.54	-1.7
3,341,671	-		IAI47_15825	0.54	+0.3
3,341,671	-		IAI47_15825	0.54	-0.5
3,341,671	-		IAI47_15825	0.54	+1.6
3,341,671	-		IAI47_15825	0.54	-0.3
3,341,671	-		IAI47_15825	0.54	-1.2
3,341,671	-		IAI47_15825	0.54	-0.7
3,341,671	-		IAI47_15825	0.54	+0.2
3,341,671	-		IAI47_15825	0.54	+1.2
3,341,671	-		IAI47_15825	0.54	+0.7
3,341,673	+		IAI47_15825	0.54	-0.8
3,341,673	+		IAI47_15825	0.54	+0.9
3,341,673	+		IAI47_15825	0.54	+0.9
3,341,673	+		IAI47_15825	0.54	+1.5
3,341,673	+		IAI47_15825	0.54	+2.7
3,341,673	+		IAI47_15825	0.54	-1.2
3,341,673	+		IAI47_15825	0.54	-0.7
3,341,674	-		IAI47_15825	0.54	-1.2
3,341,674	-		IAI47_15825	0.54	-0.4
3,341,674	-		IAI47_15825	0.54	-0.8
3,341,674	-		IAI47_15825	0.54	-0.6
3,341,674	-		IAI47_15825	0.54	+0.4
3,341,674	-		IAI47_15825	0.54	+0.4
3,341,674	-		IAI47_15825	0.54	-1.1
3,341,721	-		IAI47_15825	0.57	+0.4
3,341,813	+		IAI47_15825	0.64	+0.5
3,341,813	+		IAI47_15825	0.64	-2.2
3,341,814	-		IAI47_15825	0.64	-0.8
3,341,814	-		IAI47_15825	0.64	-0.1
3,341,814	-		IAI47_15825	0.64	-0.6
3,341,814	-		IAI47_15825	0.64	+1.3
3,341,814	-		IAI47_15825	0.64	-1.0
3,341,814	-		IAI47_15825	0.64	-1.1
3,341,816	+		IAI47_15825	0.64	+1.6
3,341,817	-		IAI47_15825	0.64	-2.2
3,341,817	-		IAI47_15825	0.64	-0.2
3,341,847	+		IAI47_15825	0.66	-0.1
3,341,848	-		IAI47_15825	0.66	-1.2
3,341,848	-		IAI47_15825	0.66	-1.6
3,341,881	+		IAI47_15825	0.69	-1.2
3,341,881	+		IAI47_15825	0.69	+0.1
3,341,881	+		IAI47_15825	0.69	+0.0
3,341,882	-		IAI47_15825	0.69	-0.4
3,341,882	-		IAI47_15825	0.69	-1.4
3,341,889	+		IAI47_15825	0.69	-0.6
3,341,889	+		IAI47_15825	0.69	-0.4
3,341,889	+		IAI47_15825	0.69	+0.6
3,341,890	-		IAI47_15825	0.69	+0.3
3,341,890	-		IAI47_15825	0.69	-0.0
3,341,890	-		IAI47_15825	0.69	+0.3
3,341,903	+		IAI47_15825	0.70	-1.8
3,341,903	+		IAI47_15825	0.70	-0.3
3,341,904	-		IAI47_15825	0.70	-1.1
3,341,961	+		IAI47_15825	0.74	+1.5
3,341,961	+		IAI47_15825	0.74	-1.1
3,342,078	+		IAI47_15825	0.83	-0.6
3,342,078	+		IAI47_15825	0.83	+0.2
3,342,078	+		IAI47_15825	0.83	+1.4
3,342,079	-		IAI47_15825	0.83	+0.5
3,342,079	-		IAI47_15825	0.83	-1.0
3,342,079	-		IAI47_15825	0.83	+1.0
3,342,079	-		IAI47_15825	0.83	+1.9
3,342,079	-		IAI47_15825	0.83	-1.2
3,342,079	-		IAI47_15825	0.83	-1.6
3,342,079	-		IAI47_15825	0.83	-1.1
3,342,084	+		IAI47_15825	0.83	-1.8
3,342,084	+		IAI47_15825	0.83	+1.8
3,342,084	+		IAI47_15825	0.83	-1.2
3,342,085	-		IAI47_15825	0.83	-1.5
3,342,085	-		IAI47_15825	0.83	-1.3
3,342,085	-		IAI47_15825	0.83	-1.6
3,342,099	-		IAI47_15825	0.84	+0.3
3,342,099	-		IAI47_15825	0.84	+2.6
3,342,165	+		IAI47_15825	0.89	-0.3
3,342,221	+				-0.6
3,342,221	+				-1.0
3,342,221	+				-0.0
3,342,222	-				-0.9
3,342,222	-				+0.3
3,342,268	+				+1.2
3,342,268	+				+1.2
3,342,268	+				+0.4
3,342,269	-				-0.5
3,342,269	-				+1.5
3,342,299	+				-0.5
3,342,299	+				+0.4
3,342,300	-				-0.2
3,342,300	-				+2.2
3,342,317	+				+1.4
3,342,317	+				+0.2
3,342,317	+				+0.8
3,342,317	+				-1.6
3,342,318	-				+1.2
3,342,318	-				-1.4
3,342,318	-				+2.8
3,342,318	-				-0.8
3,342,318	-				-0.2
3,342,346	+				+0.1
3,342,346	+				-1.0
3,342,346	+				-0.9
3,342,347	-				+2.6
3,342,392	+				-0.4
3,342,392	+				+0.6
3,342,392	+				-0.8
3,342,392	+				+2.1
3,342,393	-				-1.6
3,342,393	-				+1.6
3,342,393	-				+0.6
3,342,393	-				+0.2
3,342,393	-				+1.0
3,342,395	+				-1.1
3,342,395	+				+1.4
3,342,396	-				-2.4
3,342,396	-				-0.6
3,342,396	-				+0.1
3,342,396	-				-1.3
3,342,396	-				-2.2
3,342,396	-				+0.3
3,342,396	-				-0.2
3,342,396	-				-1.0
3,342,396	-				-0.9
3,342,419	+		IAI47_15830	0.10	-1.6
3,342,515	-		IAI47_15830	0.20	+0.4
3,342,545	+		IAI47_15830	0.23	+1.9
3,342,545	+		IAI47_15830	0.23	-0.0
3,342,545	+		IAI47_15830	0.23	+1.7
3,342,545	+		IAI47_15830	0.23	-1.0
3,342,545	+		IAI47_15830	0.23	-0.7
3,342,545	+		IAI47_15830	0.23	-0.4
3,342,546	-		IAI47_15830	0.24	+1.5
3,342,546	-		IAI47_15830	0.24	+1.1
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3,342,569	+		IAI47_15830	0.26	+2.1
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3,343,262	+				+0.2
3,343,262	+				-1.7
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3,343,263	-				+0.4