Strain Fitness in Pantoea sp. MT58 around IAI47_15055

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,174,258	+				+0.4
3,174,258	+				+2.0
3,174,258	+				+0.3
3,174,258	+				-0.4
3,174,258	+				-0.3
3,174,258	+				+2.2
3,174,259	-				+1.6
3,174,259	-				-1.5
3,174,259	-				-2.0
3,174,259	-				-1.6
3,174,259	-				-0.2
3,174,442	+				-1.2
3,174,442	+				-1.4
3,174,442	+				-0.8
3,174,443	-				-0.1
3,174,443	-				-0.2
3,174,443	-				+0.6
3,174,540	+				+0.5
3,174,541	-				-2.2
3,174,592	+		IAI47_15050	0.15	-0.2
3,174,592	+		IAI47_15050	0.15	-0.9
3,174,592	+		IAI47_15050	0.15	+2.8
3,174,592	+		IAI47_15050	0.15	+1.0
3,174,592	+		IAI47_15050	0.15	+2.0
3,174,593	-		IAI47_15050	0.16	+0.0
3,174,593	-		IAI47_15050	0.16	-1.9
3,174,593	-		IAI47_15050	0.16	-0.2
3,174,612	-		IAI47_15050	0.24	-1.0
3,174,612	-		IAI47_15050	0.24	+2.0
3,174,612	-		IAI47_15050	0.24	-2.2
3,174,612	-		IAI47_15050	0.24	+2.4
3,174,612	-		IAI47_15050	0.24	-0.5
3,174,612	-		IAI47_15050	0.24	-0.0
3,174,613	+		IAI47_15050	0.25	-1.5
3,174,614	-		IAI47_15050	0.25	-1.6
3,174,614	-		IAI47_15050	0.25	-0.5
3,174,653	+		IAI47_15050	0.43	+2.6
3,174,678	+		IAI47_15050	0.54	+1.3
3,174,678	+		IAI47_15050	0.54	-1.9
3,174,678	+		IAI47_15050	0.54	+0.5
3,174,679	-		IAI47_15050	0.55	+1.6
3,174,706	-		IAI47_15050	0.67	-1.9
3,174,706	-		IAI47_15050	0.67	-2.2
3,174,706	-		IAI47_15050	0.67	+1.3
3,174,706	-		IAI47_15050	0.67	-1.5
3,174,719	-		IAI47_15050	0.73	-2.8
3,174,730	+		IAI47_15050	0.78	-1.3
3,174,731	-		IAI47_15050	0.79	-0.7
3,174,731	-		IAI47_15050	0.79	+0.4
3,174,733	+		IAI47_15050	0.79	+1.5
3,174,733	+		IAI47_15050	0.79	-2.5
3,174,733	+		IAI47_15050	0.79	-1.2
3,174,733	+		IAI47_15050	0.79	-1.3
3,174,734	-		IAI47_15050	0.80	+1.1
3,174,738	+		IAI47_15050	0.82	-1.1
3,174,738	+		IAI47_15050	0.82	+0.5
3,174,738	+		IAI47_15050	0.82	-0.0
3,174,738	+		IAI47_15050	0.82	-2.2
3,174,739	-		IAI47_15050	0.82	-1.7
3,174,739	-		IAI47_15050	0.82	+1.8
3,174,771	+				+0.2
3,174,772	-				+0.9
3,174,791	+				-1.6
3,174,803	+				+1.0
3,174,803	+				+1.2
3,174,804	-				-1.4
3,174,812	+				-1.8
3,174,813	-				-0.5
3,174,826	+				+1.9
3,174,826	+				+0.8
3,174,826	+				+1.1
3,174,827	-				-0.1
3,174,827	-				+1.0
3,174,828	+				-1.2
3,174,828	+				-0.8
3,174,828	+				-0.4
3,174,837	+				+1.0
3,174,837	+				+1.2
3,174,838	-				+4.3
3,174,883	+				-1.9
3,174,884	-				+1.7
3,174,889	+				-0.3
3,174,890	-				-0.1
3,174,890	-				-1.3
3,174,890	-				-0.7
3,174,904	+				-0.8
3,174,905	-				+0.0
3,174,956	+				-1.5
3,174,956	+				+0.0
3,174,956	+				+0.8
3,174,956	+				-1.1
3,174,956	+				-2.3
3,174,956	+				-1.7
3,174,957	-				-1.6
3,174,958	+				-0.2
3,174,960	+				-0.7
3,174,960	+				+0.8
3,174,960	+				+0.7
3,174,960	+				-0.6
3,174,961	-				-1.9
3,174,979	+				+0.9
3,174,980	-				+0.3
3,175,013	+				-1.2
3,175,060	+				-0.8
3,175,060	+				-1.4
3,175,061	-				-0.4
3,175,061	-				+1.1
3,175,067	-				+2.8
3,175,084	+				-2.7
3,175,085	-				-0.9
3,175,085	-				-0.0
3,175,085	-				-0.6
3,175,085	-				+1.2
3,175,085	-				+0.2
3,175,092	+				+0.1
3,175,092	+				-0.2
3,175,093	-				-0.8
3,175,093	-				+0.1
3,175,156	-				-1.8
3,175,156	-				-0.6
3,175,156	-				+0.8
3,175,257	+				+1.9
3,175,258	-				-0.5
3,175,258	-				-1.9
3,175,258	-				-1.4
3,175,286	+				-1.2
3,175,286	+				-2.5
3,175,286	+				+0.0
3,175,300	+				+2.4
3,175,301	-				+1.8
3,175,303	+				+0.2
3,175,303	+				+0.1
3,175,303	+				+1.1
3,175,303	+				-0.9
3,175,303	+				-2.0
3,175,304	-				-0.2
3,175,304	-				+0.4
3,175,304	-				+1.1
3,175,304	-				+2.8
3,175,304	-				-1.0
3,175,304	-				+0.2
3,175,304	-				-1.2
3,175,347	-		IAI47_15055	0.11	+0.1
3,175,365	-		IAI47_15055	0.13	-1.7
3,175,372	+		IAI47_15055	0.13	-2.2
3,175,373	-		IAI47_15055	0.13	-0.6
3,175,382	+		IAI47_15055	0.14	-0.6
3,175,383	-		IAI47_15055	0.14	-1.1
3,175,383	-		IAI47_15055	0.14	-1.0
3,175,383	-		IAI47_15055	0.14	-1.2
3,175,642	+		IAI47_15055	0.33	-0.1
3,175,697	+		IAI47_15055	0.37	+0.8
3,175,697	+		IAI47_15055	0.37	+0.5
3,175,697	+		IAI47_15055	0.37	+1.4
3,175,698	-		IAI47_15055	0.37	+0.8
3,175,698	-		IAI47_15055	0.37	+0.3
3,175,698	-		IAI47_15055	0.37	-1.8
3,175,698	-		IAI47_15055	0.37	+2.1
3,175,807	+		IAI47_15055	0.45	+0.7
3,175,807	+		IAI47_15055	0.45	+0.6
3,175,985	+		IAI47_15055	0.57	-2.2
3,175,985	+		IAI47_15055	0.57	-0.0
3,175,986	-		IAI47_15055	0.57	-1.7
3,176,071	+		IAI47_15055	0.64	+1.4
3,176,072	-		IAI47_15055	0.64	-1.2
3,176,072	-		IAI47_15055	0.64	-0.5
3,176,136	+		IAI47_15055	0.68	-0.0
3,176,136	+		IAI47_15055	0.68	-1.2
3,176,136	+		IAI47_15055	0.68	+0.6
3,176,136	+		IAI47_15055	0.68	-0.8
3,176,319	-		IAI47_15055	0.82	+1.8
3,176,319	-		IAI47_15055	0.82	-0.2
3,176,319	-		IAI47_15055	0.82	-1.0
3,176,319	-		IAI47_15055	0.82	+0.3
3,176,354	+		IAI47_15055	0.84	-0.1
3,176,354	+		IAI47_15055	0.84	-1.7
3,176,354	+		IAI47_15055	0.84	-0.8
3,176,354	+		IAI47_15055	0.84	+0.4
3,176,354	+		IAI47_15055	0.84	+0.1
3,176,354	+		IAI47_15055	0.84	-1.6
3,176,354	+		IAI47_15055	0.84	+0.6
3,176,354	+		IAI47_15055	0.84	+2.8
3,176,354	+		IAI47_15055	0.84	-1.4
3,176,354	+		IAI47_15055	0.84	-0.4
3,176,354	+		IAI47_15055	0.84	-0.1
3,176,354	+		IAI47_15055	0.84	+0.7
3,176,355	-		IAI47_15055	0.84	+0.1
3,176,355	-		IAI47_15055	0.84	+0.8
3,176,369	+		IAI47_15055	0.85	-0.4
3,176,472	+				+0.9
3,176,472	+				-1.0
3,176,473	-				-0.8
3,176,473	-				+0.9
3,176,473	-				-1.8
3,176,473	-				-0.0
3,176,498	+				+1.6
3,176,575	+				-0.1
3,176,575	+				+1.5
3,176,576	-				+1.0
3,176,591	+				-0.7
3,176,591	+				-1.3
3,176,592	-				+0.2
3,176,592	-				-0.1
3,176,592	-				-0.0
3,176,594	+				-1.2
3,176,594	+				+0.5
3,176,594	+				-0.6
3,176,594	+				+2.2
3,176,594	+				+3.2
3,176,594	+				-0.7
3,176,594	+				+0.5
3,176,595	-				-0.0
3,176,595	-				-0.1
3,176,595	-				-0.4
3,176,595	-				-0.4
3,176,595	-				-0.5
3,176,595	-				-1.4
3,176,611	+				-0.2
3,176,612	-				+1.6
3,176,612	-				-1.6
3,176,612	-				+0.3
3,176,612	-				-1.0
3,176,648	+				-2.3
3,176,649	-				-2.9
3,176,649	-				-1.1
3,176,649	-				-1.1
3,176,649	-				+1.6
3,176,664	+		IAI47_15060	0.14	+0.3
3,176,664	+		IAI47_15060	0.14	+0.8
3,176,665	-		IAI47_15060	0.14	-0.2
3,176,669	+		IAI47_15060	0.15	-0.3
3,176,669	+		IAI47_15060	0.15	+1.0
3,176,670	-		IAI47_15060	0.15	-0.2
3,176,670	-		IAI47_15060	0.15	-1.7
3,176,682	+		IAI47_15060	0.18	-0.4
3,176,682	+		IAI47_15060	0.18	+1.6
3,176,682	+		IAI47_15060	0.18	-0.5
3,176,682	+		IAI47_15060	0.18	+0.1
3,176,683	-		IAI47_15060	0.19	+0.2
3,176,683	-		IAI47_15060	0.19	+0.8
3,176,683	-		IAI47_15060	0.19	-0.1
3,176,683	-		IAI47_15060	0.19	-0.2
3,176,683	-		IAI47_15060	0.19	+0.3
3,176,683	-		IAI47_15060	0.19	+1.2
3,176,701	+		IAI47_15060	0.23	+0.9
3,176,701	+		IAI47_15060	0.23	-0.1
3,176,702	-		IAI47_15060	0.23	-0.8
3,176,708	+		IAI47_15060	0.25	+0.9
3,176,709	-		IAI47_15060	0.25	+1.8
3,176,747	+		IAI47_15060	0.35	-1.5
3,176,748	-		IAI47_15060	0.35	-1.2
3,176,771	-		IAI47_15060	0.41	-0.3
3,176,771	-		IAI47_15060	0.41	-1.0
3,176,801	-		IAI47_15060	0.49	+0.3
3,176,801	-		IAI47_15060	0.49	+0.8
3,176,801	-		IAI47_15060	0.49	-0.6
3,176,818	+		IAI47_15060	0.53	-2.6
3,176,818	+		IAI47_15060	0.53	+1.2
3,176,852	+		IAI47_15060	0.62	+0.5
3,176,852	+		IAI47_15060	0.62	+1.2
3,176,852	+		IAI47_15060	0.62	+1.6
3,176,852	+		IAI47_15060	0.62	+0.3
3,176,852	+		IAI47_15060	0.62	+1.2
3,176,852	+		IAI47_15060	0.62	-1.1
3,176,852	+		IAI47_15060	0.62	-1.9
3,176,852	+		IAI47_15060	0.62	-1.2
3,176,852	+		IAI47_15060	0.62	-0.5
3,176,852	+		IAI47_15060	0.62	-1.1
3,176,853	-		IAI47_15060	0.62	-0.1
3,176,853	-		IAI47_15060	0.62	+1.1
3,176,853	-		IAI47_15060	0.62	-2.0
3,176,853	-		IAI47_15060	0.62	+1.1
3,176,853	-		IAI47_15060	0.62	+1.1
3,176,853	-		IAI47_15060	0.62	+2.8
3,176,853	-		IAI47_15060	0.62	-0.6
3,176,853	-		IAI47_15060	0.62	-1.0
3,176,853	-		IAI47_15060	0.62	-0.0
3,176,853	-		IAI47_15060	0.62	-0.7
3,176,853	-		IAI47_15060	0.62	+2.3
3,176,853	-		IAI47_15060	0.62	+2.1
3,176,853	-		IAI47_15060	0.62	-1.1
3,176,853	-		IAI47_15060	0.62	-0.1
3,176,853	-		IAI47_15060	0.62	+0.2
3,176,882	+		IAI47_15060	0.69	-0.2
3,176,883	-		IAI47_15060	0.69	-0.4
3,176,883	-		IAI47_15060	0.69	+0.5
3,176,884	+		IAI47_15060	0.70	-0.8
3,176,885	-		IAI47_15060	0.70	+1.6
3,176,885	-		IAI47_15060	0.70	-0.3
3,176,885	-		IAI47_15060	0.70	+0.2
3,176,932	+		IAI47_15060	0.82	+0.8
3,176,933	-		IAI47_15060	0.82	-0.4
3,176,933	-		IAI47_15060	0.82	-0.6
3,176,985	+				-0.4
3,177,015	+				-2.7
3,177,049	+				-0.8
3,177,063	+				-0.2
3,177,063	+				+0.7
3,177,064	-				+1.6
3,177,064	-				-0.7
3,177,064	-				+0.0
3,177,079	+				-3.0
3,177,137	+				+1.0
3,177,137	+				-1.5
3,177,137	+				-0.5
3,177,137	+				+1.2
3,177,137	+				+0.3
3,177,138	-				-0.0
3,177,154	+				+1.1
3,177,154	+				-1.2
3,177,175	+				+4.2
3,177,249	+				-2.1
3,177,250	-				-1.8
3,177,250	-				-1.7
3,177,250	-				-0.2
3,177,292	+		IAI47_15065	0.13	-0.5
3,177,292	+		IAI47_15065	0.13	+2.6
3,177,318	+		IAI47_15065	0.15	-0.2
3,177,370	+		IAI47_15065	0.21	+1.8
3,177,370	+		IAI47_15065	0.21	-0.9
3,177,380	-		IAI47_15065	0.22	-1.7
3,177,433	-		IAI47_15065	0.27	-1.1
3,177,448	+		IAI47_15065	0.29	-1.7
3,177,470	+		IAI47_15065	0.31	-0.5
3,177,470	+		IAI47_15065	0.31	-2.8
3,177,470	+		IAI47_15065	0.31	-0.2
3,177,470	+		IAI47_15065	0.31	-1.9
3,177,470	+		IAI47_15065	0.31	+0.9
3,177,471	-		IAI47_15065	0.31	+1.8
3,177,544	+		IAI47_15065	0.39	-0.2
3,177,545	-		IAI47_15065	0.39	+0.4