Strain Fitness in Pantoea sp. MT58 around IAI47_14880

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,139,358	-				+0.2
3,139,358	-				+2.0
3,139,361	+				+1.2
3,139,362	-				-0.0
3,139,362	-				-0.7
3,139,426	+		IAI47_14870	0.16	+0.5
3,139,426	+		IAI47_14870	0.16	-0.4
3,139,427	-		IAI47_14870	0.16	-0.4
3,139,427	-		IAI47_14870	0.16	+1.2
3,139,495	+		IAI47_14870	0.26	+0.3
3,139,495	+		IAI47_14870	0.26	+0.1
3,139,495	+		IAI47_14870	0.26	-1.7
3,139,496	-		IAI47_14870	0.26	+0.0
3,139,496	-		IAI47_14870	0.26	-1.6
3,139,496	-		IAI47_14870	0.26	-0.6
3,139,496	-		IAI47_14870	0.26	+0.3
3,139,504	+		IAI47_14870	0.28	+0.3
3,139,505	-		IAI47_14870	0.28	+2.1
3,139,505	-		IAI47_14870	0.28	-0.4
3,139,505	-		IAI47_14870	0.28	-1.0
3,139,505	-		IAI47_14870	0.28	-1.0
3,139,531	+		IAI47_14870	0.32	-1.9
3,139,614	+		IAI47_14870	0.44	-0.7
3,139,615	-		IAI47_14870	0.45	+1.4
3,139,618	+		IAI47_14870	0.45	+1.9
3,139,618	+		IAI47_14870	0.45	-1.0
3,139,618	+		IAI47_14870	0.45	-1.2
3,139,618	+				-0.1
3,139,618	+		IAI47_14870	0.45	+2.9
3,139,618	+		IAI47_14870	0.45	+0.3
3,139,618	+		IAI47_14870	0.45	-0.4
3,139,618	+		IAI47_14870	0.45	+0.7
3,139,618	+		IAI47_14870	0.45	-0.7
3,139,619	-		IAI47_14870	0.45	+0.3
3,139,619	-		IAI47_14870	0.45	+1.2
3,139,619	-		IAI47_14870	0.45	-1.5
3,139,619	-		IAI47_14870	0.45	-0.2
3,139,619	-		IAI47_14870	0.45	-1.7
3,139,619	-		IAI47_14870	0.45	+2.3
3,139,619	-		IAI47_14870	0.45	+2.7
3,139,626	+		IAI47_14870	0.46	-0.5
3,139,627	-		IAI47_14870	0.46	+0.7
3,139,627	-		IAI47_14870	0.46	+1.1
3,139,627	-		IAI47_14870	0.46	+0.2
3,139,627	-		IAI47_14870	0.46	-0.5
3,139,644	+		IAI47_14870	0.49	-0.5
3,139,644	+		IAI47_14870	0.49	+0.6
3,139,644	+		IAI47_14870	0.49	+0.3
3,139,644	+		IAI47_14870	0.49	-1.2
3,139,644	+		IAI47_14870	0.49	-1.1
3,139,644	+		IAI47_14870	0.49	-0.3
3,139,644	+		IAI47_14870	0.49	-1.4
3,139,644	+		IAI47_14870	0.49	-1.4
3,139,644	+		IAI47_14870	0.49	+0.8
3,139,645	-		IAI47_14870	0.49	+1.7
3,139,645	-		IAI47_14870	0.49	+1.5
3,139,645	-		IAI47_14870	0.49	+0.8
3,139,645	-		IAI47_14870	0.49	+0.2
3,139,645	-		IAI47_14870	0.49	+1.5
3,139,767	+		IAI47_14870	0.68	+0.0
3,139,767	+		IAI47_14870	0.68	+1.0
3,139,767	+		IAI47_14870	0.68	-0.2
3,139,768	-		IAI47_14870	0.68	+2.8
3,139,768	-		IAI47_14870	0.68	+0.0
3,139,768	-		IAI47_14870	0.68	+1.6
3,139,768	-		IAI47_14870	0.68	+2.4
3,139,768	-		IAI47_14870	0.68	-1.1
3,139,768	-		IAI47_14870	0.68	-1.6
3,139,768	-		IAI47_14870	0.68	-3.1
3,139,770	+		IAI47_14870	0.68	+0.0
3,139,770	+		IAI47_14870	0.68	+1.3
3,139,771	-		IAI47_14870	0.68	+0.6
3,139,771	-		IAI47_14870	0.68	+1.0
3,139,771	-		IAI47_14870	0.68	+2.1
3,139,840	+		IAI47_14870	0.79	+2.6
3,139,841	-		IAI47_14870	0.79	-1.3
3,139,841	-		IAI47_14870	0.79	-1.1
3,139,841	-		IAI47_14870	0.79	-2.3
3,139,841	-		IAI47_14870	0.79	-1.3
3,139,841	-		IAI47_14870	0.79	+2.0
3,139,844	-		IAI47_14870	0.79	+0.5
3,139,897	-		IAI47_14870	0.88	-0.1
3,139,897	-		IAI47_14870	0.88	-2.3
3,139,897	-		IAI47_14870	0.88	-0.2
3,139,897	-		IAI47_14870	0.88	-0.1
3,139,998	+				+0.5
3,139,998	+				-2.1
3,139,998	+				+0.9
3,139,999	-				-0.9
3,139,999	-				+1.7
3,139,999	-				-1.7
3,140,018	+		IAI47_14875	0.12	-1.5
3,140,018	+		IAI47_14875	0.12	+0.4
3,140,018	+		IAI47_14875	0.12	-0.6
3,140,018	+		IAI47_14875	0.12	+1.0
3,140,018	+		IAI47_14875	0.12	+1.8
3,140,018	+		IAI47_14875	0.12	-0.4
3,140,018	+		IAI47_14875	0.12	+0.6
3,140,019	-		IAI47_14875	0.12	+0.6
3,140,019	-		IAI47_14875	0.12	+1.9
3,140,019	-		IAI47_14875	0.12	+0.2
3,140,019	-		IAI47_14875	0.12	+2.1
3,140,019	-		IAI47_14875	0.12	-2.1
3,140,019	-		IAI47_14875	0.12	+0.1
3,140,019	-		IAI47_14875	0.12	+1.8
3,140,019	-		IAI47_14875	0.12	-0.4
3,140,019	-		IAI47_14875	0.12	-1.4
3,140,073	+		IAI47_14875	0.27	-0.0
3,140,073	+		IAI47_14875	0.27	-0.5
3,140,213	+		IAI47_14875	0.66	+0.6
3,140,213	+		IAI47_14875	0.66	-0.6
3,140,214	-		IAI47_14875	0.66	-1.9
3,140,214	-		IAI47_14875	0.66	-0.4
3,140,216	+		IAI47_14875	0.67	-1.4
3,140,216	+		IAI47_14875	0.67	+0.2
3,140,216	+		IAI47_14875	0.67	+0.6
3,140,216	+		IAI47_14875	0.67	-0.7
3,140,216	+		IAI47_14875	0.67	+0.6
3,140,216	+		IAI47_14875	0.67	-0.8
3,140,216	+		IAI47_14875	0.67	+0.2
3,140,216	+		IAI47_14875	0.67	-0.7
3,140,216	+		IAI47_14875	0.67	+2.4
3,140,217	-		IAI47_14875	0.67	-1.4
3,140,217	-		IAI47_14875	0.67	+1.1
3,140,217	-		IAI47_14875	0.67	+0.2
3,140,217	-		IAI47_14875	0.67	+1.2
3,140,222	+		IAI47_14875	0.69	-1.5
3,140,222	+		IAI47_14875	0.69	-0.4
3,140,223	-		IAI47_14875	0.69	+0.8
3,140,223	-		IAI47_14875	0.69	-1.4
3,140,249	+		IAI47_14875	0.76	-0.8
3,140,249	+		IAI47_14875	0.76	-0.7
3,140,249	+		IAI47_14875	0.76	+1.0
3,140,252	+		IAI47_14875	0.77	-1.5
3,140,253	-		IAI47_14875	0.77	+1.4
3,140,253	-		IAI47_14875	0.77	-0.7
3,140,253	-		IAI47_14875	0.77	-1.4
3,140,253	-		IAI47_14875	0.77	+0.7
3,140,253	-		IAI47_14875	0.77	-0.1
3,140,253	-		IAI47_14875	0.77	-1.2
3,140,253	-		IAI47_14875	0.77	+0.8
3,140,253	-		IAI47_14875	0.77	-0.4
3,140,337	-				+0.2
3,140,337	-				-0.7
3,140,337	-				+0.6
3,140,337	-				-0.3
3,140,347	+				+1.5
3,140,347	+				+0.9
3,140,347	+				-2.3
3,140,347	+				+0.2
3,140,347	+				-1.0
3,140,347	+				-2.4
3,140,347	+				-0.4
3,140,347	+				+0.3
3,140,348	-				-0.7
3,140,348	-				+2.4
3,140,351	+				+2.0
3,140,389	-				+0.4
3,140,423	+		IAI47_14880	0.11	-1.0
3,140,423	+		IAI47_14880	0.11	-1.1
3,140,424	-		IAI47_14880	0.12	+1.6
3,140,424	-		IAI47_14880	0.12	-1.3
3,140,449	+		IAI47_14880	0.15	+0.1
3,140,449	+		IAI47_14880	0.15	-0.4
3,140,449	+		IAI47_14880	0.15	+0.9
3,140,449	+		IAI47_14880	0.15	+0.6
3,140,450	-		IAI47_14880	0.15	-1.9
3,140,450	-		IAI47_14880	0.15	-1.7
3,140,497	+		IAI47_14880	0.22	+0.2
3,140,521	+		IAI47_14880	0.26	+1.8
3,140,521	+		IAI47_14880	0.26	+1.0
3,140,521	+		IAI47_14880	0.26	-1.4
3,140,522	-		IAI47_14880	0.26	+1.2
3,140,522	-		IAI47_14880	0.26	+1.1
3,140,522	-		IAI47_14880	0.26	+0.0
3,140,522	-		IAI47_14880	0.26	+1.1
3,140,522	-		IAI47_14880	0.26	-0.1
3,140,573	-		IAI47_14880	0.33	+0.3
3,140,573	-		IAI47_14880	0.33	-0.4
3,140,651	+		IAI47_14880	0.45	-2.1
3,140,652	-		IAI47_14880	0.45	-0.5
3,140,652	-		IAI47_14880	0.45	+0.7
3,140,652	-		IAI47_14880	0.45	-1.6
3,140,652	-		IAI47_14880	0.45	+1.6
3,140,652	-		IAI47_14880	0.45	-1.8
3,140,652	-		IAI47_14880	0.45	+2.7
3,140,668	+		IAI47_14880	0.47	+1.0
3,140,668	+		IAI47_14880	0.47	-1.7
3,140,668	+		IAI47_14880	0.47	-0.4
3,140,668	+		IAI47_14880	0.47	-0.8
3,140,669	-		IAI47_14880	0.48	+2.1
3,140,669	-		IAI47_14880	0.48	+0.7
3,140,669	-		IAI47_14880	0.48	+0.5
3,140,669	-		IAI47_14880	0.48	+0.5
3,140,669	-		IAI47_14880	0.48	+1.0
3,140,684	+		IAI47_14880	0.50	-1.0
3,140,685	-		IAI47_14880	0.50	+3.2
3,140,845	+		IAI47_14880	0.74	-1.6
3,140,846	-		IAI47_14880	0.74	+0.6
3,140,846	-		IAI47_14880	0.74	-0.2
3,140,846	-		IAI47_14880	0.74	+0.5
3,140,846	-		IAI47_14880	0.74	-0.6
3,140,899	+		IAI47_14880	0.82	+1.2
3,140,985	+				+1.6
3,140,986	-				+2.6
3,141,027	+				+0.4
3,141,027	+				+2.3
3,141,028	-				-1.6
3,141,040	-				+1.1
3,141,040	-				+1.1
3,141,040	-				+1.1
3,141,051	-				+0.2
3,141,051	-				-0.7
3,141,051	-				-0.1
3,141,068	+				-1.1
3,141,096	+				+0.8
3,141,096	+				+2.0
3,141,096	+				+0.9
3,141,096	+				+0.0
3,141,097	-				-0.4
3,141,097	-				-0.8
3,141,104	+				-0.8
3,141,104	+				+0.1
3,141,104	+				+0.6
3,141,104	+				+3.3
3,141,104	+				+0.7
3,141,104	+				-0.8
3,141,105	-				-1.9
3,141,105	-				-0.2
3,141,105	-				+1.3
3,141,105	-				-1.1
3,141,105	-				+0.4
3,141,126	+				-0.7
3,141,126	+				-0.7
3,141,126	+				+1.2
3,141,127	-				+1.4
3,141,127	-				+0.2
3,141,127	-				+0.0
3,141,127	-				+2.0
3,141,127	-				+1.2
3,141,174	+				-0.3
3,141,175	-				+1.0
3,141,184	+				-0.4
3,141,188	+				+1.0
3,141,188	+				-1.2
3,141,192	-				-0.8
3,141,192	-				-1.2
3,141,192	-				-0.5
3,141,205	+				+0.7
3,141,205	+				+0.2
3,141,205	+				+1.2
3,141,206	-				+0.5
3,141,206	-				-1.5
3,141,206	-				-1.4
3,141,221	+		IAI47_14885	0.11	-2.9
3,141,222	-		IAI47_14885	0.11	-0.1
3,141,272	+		IAI47_14885	0.24	-1.8
3,141,272	+		IAI47_14885	0.24	-1.9
3,141,272	+		IAI47_14885	0.24	+0.3
3,141,272	+		IAI47_14885	0.24	-1.6
3,141,272	+		IAI47_14885	0.24	-0.2
3,141,273	-		IAI47_14885	0.24	-2.5
3,141,273	-		IAI47_14885	0.24	+0.0
3,141,273	-		IAI47_14885	0.24	-1.3
3,141,332	+		IAI47_14885	0.39	-0.4
3,141,332	+		IAI47_14885	0.39	+1.4
3,141,332	+		IAI47_14885	0.39	+2.3
3,141,435	+		IAI47_14885	0.66	-2.2
3,141,435	+		IAI47_14885	0.66	+0.5
3,141,436	-		IAI47_14885	0.66	-1.6
3,141,436	-		IAI47_14885	0.66	+0.8
3,141,436	-		IAI47_14885	0.66	-0.9
3,141,568	-				-0.4
3,141,705	+		IAI47_14890	0.13	+1.5
3,141,705	+		IAI47_14890	0.13	-1.6
3,141,705	+		IAI47_14890	0.13	+2.2
3,141,705	+		IAI47_14890	0.13	-0.1
3,141,705	+		IAI47_14890	0.13	+0.8
3,141,705	+		IAI47_14890	0.13	-0.7
3,141,706	-		IAI47_14890	0.13	+1.0
3,141,706	-		IAI47_14890	0.13	+0.0
3,141,706	-		IAI47_14890	0.13	+2.3
3,141,706	-		IAI47_14890	0.13	-2.3
3,141,706	-		IAI47_14890	0.13	+2.3
3,141,708	+		IAI47_14890	0.13	+0.4
3,141,708	+		IAI47_14890	0.13	-1.9
3,141,708	+		IAI47_14890	0.13	+0.6
3,141,708	+		IAI47_14890	0.13	-0.1
3,141,708	+		IAI47_14890	0.13	-2.4
3,141,708	+		IAI47_14890	0.13	-0.4
3,141,708	+		IAI47_14890	0.13	-1.6
3,141,708	+		IAI47_14890	0.13	+0.5
3,141,708	+		IAI47_14890	0.13	-1.1
3,141,709	-		IAI47_14890	0.13	-2.3
3,141,709	-		IAI47_14890	0.13	+0.1
3,141,709	-		IAI47_14890	0.13	+0.5
3,141,709	-		IAI47_14890	0.13	+1.2
3,141,709	-		IAI47_14890	0.13	-0.4
3,141,754	+		IAI47_14890	0.18	-2.8
3,141,852	-		IAI47_14890	0.27	-0.5
3,141,857	-		IAI47_14890	0.27	+2.8
3,141,899	-		IAI47_14890	0.31	+0.8
3,141,899	-		IAI47_14890	0.31	+0.5
3,141,908	-		IAI47_14890	0.32	-1.7
3,142,003	+		IAI47_14890	0.41	+0.5
3,142,003	+		IAI47_14890	0.41	-1.7
3,142,004	-		IAI47_14890	0.41	+0.9
3,142,004	-		IAI47_14890	0.41	-1.4