Strain Fitness in Pantoea sp. MT58 around IAI47_10100

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,138,660	+		IAI47_10090	0.87	-0.3
2,138,660	+		IAI47_10090	0.87	+2.2
2,138,660	+		IAI47_10090	0.87	-2.2
2,138,661	-		IAI47_10090	0.87	+1.0
2,138,661	-		IAI47_10090	0.87	-1.1
2,138,661	-		IAI47_10090	0.87	-1.7
2,138,661	-		IAI47_10090	0.87	+1.7
2,138,661	-		IAI47_10090	0.87	-0.6
2,138,661	-		IAI47_10090	0.87	-0.6
2,138,661	-		IAI47_10090	0.87	-0.0
2,138,661	-		IAI47_10090	0.87	+0.3
2,138,713	+				-0.2
2,138,713	+				+0.9
2,138,714	-				-0.8
2,138,714	-				-1.7
2,138,729	-				-0.5
2,138,737	-				+0.1
2,138,748	+				+0.4
2,138,748	+				+2.2
2,138,748	+				+1.8
2,138,748	+				-1.0
2,138,748	+				-0.8
2,138,749	-				+0.2
2,138,749	-				+1.5
2,138,749	-				-1.3
2,138,823	-				-2.2
2,138,826	-				+3.4
2,138,893	+		IAI47_10095	0.16	+0.2
2,138,915	+		IAI47_10095	0.19	-1.7
2,139,062	+		IAI47_10095	0.36	-1.5
2,139,063	-		IAI47_10095	0.36	-0.4
2,139,131	+		IAI47_10095	0.44	-2.4
2,139,132	-		IAI47_10095	0.44	+1.2
2,139,219	+		IAI47_10095	0.54	-0.7
2,139,220	-		IAI47_10095	0.54	-1.1
2,139,220	-		IAI47_10095	0.54	-1.0
2,139,228	+		IAI47_10095	0.55	-0.6
2,139,228	+		IAI47_10095	0.55	+0.8
2,139,229	-		IAI47_10095	0.55	-1.2
2,139,229	-		IAI47_10095	0.55	-1.8
2,139,229	-		IAI47_10095	0.55	-0.9
2,139,407	+		IAI47_10095	0.76	-0.6
2,139,408	-		IAI47_10095	0.76	+0.9
2,139,462	+		IAI47_10095	0.82	-0.1
2,139,462	+		IAI47_10095	0.82	+1.0
2,139,462	+		IAI47_10095	0.82	+0.2
2,139,462	+		IAI47_10095	0.82	+0.1
2,139,462	+		IAI47_10095	0.82	-0.2
2,139,462	+		IAI47_10095	0.82	+1.6
2,139,463	-		IAI47_10095	0.82	-0.4
2,139,463	-		IAI47_10095	0.82	+1.5
2,139,463	-		IAI47_10095	0.82	+0.6
2,139,463	-		IAI47_10095	0.82	-0.4
2,139,463	-		IAI47_10095	0.82	+2.6
2,139,522	+		IAI47_10095	0.89	+2.2
2,139,522	+		IAI47_10095	0.89	+3.0
2,139,522	+		IAI47_10095	0.89	+0.8
2,139,522	+		IAI47_10095	0.89	-0.8
2,139,523	-		IAI47_10095	0.89	-1.1
2,139,586	+				+1.2
2,139,615	+				+0.2
2,139,615	+				-0.3
2,139,616	-				-1.3
2,139,632	+				+1.3
2,139,632	+				+1.0
2,139,633	-				-0.2
2,139,698	-				-0.2
2,139,698	-				-1.1
2,139,711	-		IAI47_10100	0.11	-0.2
2,139,995	+		IAI47_10100	0.48	+1.8
2,139,995	+		IAI47_10100	0.48	+2.4
2,140,043	-		IAI47_10100	0.54	-1.8
2,140,200	+		IAI47_10100	0.75	+1.9
2,140,200	+		IAI47_10100	0.75	+1.1
2,140,201	-		IAI47_10100	0.75	-1.5
2,140,201	-		IAI47_10100	0.75	+3.3
2,140,201	-		IAI47_10100	0.75	-0.2
2,140,201	-		IAI47_10100	0.75	-0.6
2,140,252	+		IAI47_10100	0.82	+1.4
2,140,331	+				+0.8
2,140,331	+				+1.1
2,140,331	+				-0.3
2,140,331	+				+1.6
2,140,332	-				+0.8
2,140,393	+				+0.5
2,140,584	-		IAI47_10105	0.20	-0.7
2,140,591	+		IAI47_10105	0.21	-0.7
2,140,591	+		IAI47_10105	0.21	-0.4
2,140,591	+		IAI47_10105	0.21	-1.1
2,140,591	+		IAI47_10105	0.21	-1.1
2,140,591	+		IAI47_10105	0.21	+0.5
2,140,591	+		IAI47_10105	0.21	-0.4
2,140,592	-		IAI47_10105	0.21	-0.6
2,140,592	-		IAI47_10105	0.21	-1.5
2,140,672	+		IAI47_10105	0.33	+0.9
2,140,712	+		IAI47_10105	0.40	+1.5
2,140,712	+		IAI47_10105	0.40	+1.8
2,140,752	-		IAI47_10105	0.46	+0.5
2,140,767	+		IAI47_10105	0.48	+1.0
2,140,767	+		IAI47_10105	0.48	-0.9
2,140,767	+		IAI47_10105	0.48	+0.8
2,140,767	+		IAI47_10105	0.48	+0.9
2,140,768	-		IAI47_10105	0.49	-1.0
2,140,768	-		IAI47_10105	0.49	+0.9
2,140,768	-		IAI47_10105	0.49	-0.2
2,140,768	-		IAI47_10105	0.49	+0.6
2,140,768	-		IAI47_10105	0.49	-1.3
2,140,801	+		IAI47_10105	0.54	-0.8
2,140,801	+		IAI47_10105	0.54	-0.9
2,140,801	+		IAI47_10105	0.54	+0.8
2,140,802	-		IAI47_10105	0.54	-0.7
2,140,802	-		IAI47_10105	0.54	-0.2
2,140,802	-		IAI47_10105	0.54	+0.5
2,140,802	-		IAI47_10105	0.54	-0.2
2,140,802	-		IAI47_10105	0.54	-0.5
2,140,802	-		IAI47_10105	0.54	-0.2
2,140,802	-		IAI47_10105	0.54	+1.2
2,140,802	-		IAI47_10105	0.54	+1.5
2,140,820	+		IAI47_10105	0.57	-0.7
2,140,820	+		IAI47_10105	0.57	+0.2
2,140,820	+		IAI47_10105	0.57	-2.1
2,140,821	-		IAI47_10105	0.57	-1.1
2,140,821	-		IAI47_10105	0.57	+2.8
2,140,825	+		IAI47_10105	0.57	-0.3
2,140,826	-		IAI47_10105	0.58	-0.5
2,140,853	+		IAI47_10105	0.62	-0.5
2,140,853	+		IAI47_10105	0.62	+1.2
2,140,853	+		IAI47_10105	0.62	+0.4
2,140,854	-		IAI47_10105	0.62	-2.3
2,140,919	+		IAI47_10105	0.72	-0.5
2,140,919	+		IAI47_10105	0.72	-1.8
2,140,920	-		IAI47_10105	0.72	+0.5
2,140,920	-		IAI47_10105	0.72	+1.5
2,140,954	+		IAI47_10105	0.78	+2.1
2,140,955	-		IAI47_10105	0.78	+1.7
2,140,955	-		IAI47_10105	0.78	+0.9
2,140,955	-		IAI47_10105	0.78	-0.8
2,140,955	-		IAI47_10105	0.78	+2.1
2,141,083	-				-0.1
2,141,102	-				+0.3
2,141,102	-				-0.9
2,141,150	+				+1.5
2,141,150	+				+0.8
2,141,164	+				-0.2
2,141,164	+				-0.4
2,141,164	+				+0.3
2,141,165	+				-0.5
2,141,165	-				+0.8
2,141,165	-				-0.7
2,141,241	+				-1.0
2,141,241	+				+2.4
2,141,241	+				-0.2
2,141,242	-				-1.3
2,141,242	-				+0.7
2,141,242	-				+3.4
2,141,242	-				+2.2
2,141,242	-				+2.0
2,141,242	-				+3.2
2,141,242	-				-1.4
2,141,242	-				-1.1
2,141,242	-				-0.5
2,141,242	-				-0.9
2,141,242	-				-0.5
2,141,242	-				-2.3
2,141,242	-				+2.0
2,141,242	-				+1.2
2,141,245	+				-0.7
2,141,246	-				-1.0
2,141,246	-				-0.0
2,141,363	+		IAI47_10110	0.38	+1.0
2,141,363	+		IAI47_10110	0.38	+0.9