Strain Fitness in Pantoea sp. MT58 around IAI47_09900

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,095,555	+		IAI47_09890	0.62	+0.2
2,095,555	+		IAI47_09890	0.62	-0.6
2,095,555	+		IAI47_09890	0.62	-1.8
2,095,555	+		IAI47_09890	0.62	-2.0
2,095,555	+		IAI47_09890	0.62	+1.3
2,095,555	+		IAI47_09890	0.62	+1.2
2,095,555	+		IAI47_09890	0.62	+0.6
2,095,556	-		IAI47_09890	0.62	-1.6
2,095,556	-		IAI47_09890	0.62	+5.4
2,095,556	-		IAI47_09890	0.62	+2.0
2,095,556	-		IAI47_09890	0.62	+1.2
2,095,556	-		IAI47_09890	0.62	+0.5
2,095,556	-		IAI47_09890	0.62	+1.3
2,095,556	-		IAI47_09890	0.62	+0.1
2,095,556	-		IAI47_09890	0.62	+1.5
2,095,556	-		IAI47_09890	0.62	-0.2
2,095,556	-		IAI47_09890	0.62	+1.7
2,095,611	+		IAI47_09890	0.69	-0.7
2,095,678	+		IAI47_09890	0.78	+1.3
2,095,679	-		IAI47_09890	0.78	+0.0
2,095,681	+		IAI47_09890	0.78	-1.2
2,095,681	+		IAI47_09890	0.78	-0.5
2,095,681	+		IAI47_09890	0.78	+0.0
2,095,682	-		IAI47_09890	0.78	+0.2
2,095,682	-		IAI47_09890	0.78	+0.4
2,095,682	-		IAI47_09890	0.78	-1.6
2,095,690	+		IAI47_09890	0.79	+0.2
2,095,690	+		IAI47_09890	0.79	+1.2
2,095,690	+		IAI47_09890	0.79	-0.9
2,095,690	+		IAI47_09890	0.79	+1.1
2,095,691	-		IAI47_09890	0.79	+0.4
2,095,691	-		IAI47_09890	0.79	-0.2
2,095,691	-		IAI47_09890	0.79	+1.5
2,095,691	-		IAI47_09890	0.79	-0.1
2,095,692	+		IAI47_09890	0.79	+1.2
2,095,692	+		IAI47_09890	0.79	-1.0
2,095,692	+		IAI47_09890	0.79	-1.2
2,095,692	+		IAI47_09890	0.79	+0.0
2,095,693	-		IAI47_09890	0.80	+1.1
2,095,693	-		IAI47_09890	0.80	+1.1
2,095,693	-		IAI47_09890	0.80	+0.4
2,095,693	-		IAI47_09890	0.80	+0.6
2,095,693	-		IAI47_09890	0.80	-1.5
2,095,693	-		IAI47_09890	0.80	+1.4
2,095,721	-		IAI47_09890	0.83	+2.0
2,095,750	+		IAI47_09890	0.87	-0.2
2,095,751	-		IAI47_09890	0.87	-1.7
2,095,840	-				-0.6
2,095,875	+				-1.0
2,095,876	-				+1.4
2,095,921	+				+0.3
2,095,921	+				+0.2
2,095,921	+				+0.8
2,095,922	-				-0.9
2,095,922	-				+0.1
2,095,935	-		IAI47_09895	0.12	+1.0
2,095,935	-		IAI47_09895	0.12	-0.7
2,096,048	+		IAI47_09895	0.37	-1.2
2,096,195	+		IAI47_09895	0.71	-0.5
2,096,195	+		IAI47_09895	0.71	+0.8
2,096,196	-		IAI47_09895	0.71	+2.1
2,096,200	+		IAI47_09895	0.72	+0.5
2,096,235	-		IAI47_09895	0.80	-0.8
2,096,248	+		IAI47_09895	0.83	+2.5
2,096,248	+		IAI47_09895	0.83	+1.2
2,096,248	+		IAI47_09895	0.83	-0.1
2,096,249	-		IAI47_09895	0.83	-2.4
2,096,249	-		IAI47_09895	0.83	+1.0
2,096,249	-		IAI47_09895	0.83	+0.1
2,096,249	-		IAI47_09895	0.83	-0.2
2,096,256	+		IAI47_09895	0.85	-0.9
2,096,285	+				+0.6
2,096,285	+				-1.6
2,096,309	+				+2.2
2,096,309	+				-0.4
2,096,309	+				+0.3
2,096,309	+				+1.1
2,096,309	+				+1.0
2,096,310	-				-0.2
2,096,310	-				+0.8
2,096,310	-				+2.0
2,096,335	+				-0.7
2,096,335	+				-1.1
2,096,336	-				+4.4
2,096,393	+				+0.0
2,096,393	+				+0.8
2,096,448	+				+0.3
2,096,462	+				-0.3
2,096,484	+				+1.7
2,096,484	+				-1.3
2,096,502	+				-0.3
2,096,502	+				+2.7
2,096,502	+				+0.4
2,096,502	+				-0.3
2,096,502	+				+1.5
2,096,502	+				+0.8
2,096,502	+				-1.3
2,096,503	-				+0.9
2,096,503	-				-0.3
2,096,503	-				-0.3
2,096,504	+				+0.2
2,096,504	+				-0.3
2,096,504	+				+1.7
2,096,504	+				+0.9
2,096,504	+				+0.3
2,096,504	+				-1.3
2,096,504	+				-0.5
2,096,504	+				+0.8
2,096,504	+				+1.5
2,096,504	+				+0.5
2,096,504	+				+0.7
2,096,505	-				-1.0
2,096,505	-				-1.1
2,096,505	-				+0.4
2,096,505	-				-2.1
2,096,505	-				+0.1
2,096,505	-				-1.6
2,096,505	-				+0.8
2,096,505	-				+1.5
2,096,505	-				-1.0
2,096,514	+				+2.1
2,096,515	-				+0.7
2,096,515	-				+0.0
2,096,602	+		IAI47_09900	0.42	+0.1
2,096,656	+		IAI47_09900	0.63	-0.7
2,096,657	-		IAI47_09900	0.64	-0.3
2,096,657	-		IAI47_09900	0.64	+0.2
2,096,665	-		IAI47_09900	0.67	-0.7
2,096,665	-		IAI47_09900	0.67	-0.5
2,096,744	+				-0.3
2,096,745	-				+1.8
2,096,745	-				-0.3
2,096,745	-				-2.4
2,096,745	-				-2.8
2,096,789	+				-1.3
2,096,827	+				-0.3
2,096,827	+				-0.3
2,096,827	+				+0.4
2,096,827	+				+1.3
2,096,827	+				+1.4
2,096,828	-				-0.5
2,096,828	-				+1.6
2,096,828	-				+0.3
2,096,919	+		IAI47_09905	0.13	-0.6
2,096,919	+		IAI47_09905	0.13	+1.3
2,096,920	-		IAI47_09905	0.13	-1.3
2,097,011	+		IAI47_09905	0.20	+3.9
2,097,012	-		IAI47_09905	0.20	+0.5
2,097,012	-		IAI47_09905	0.20	+0.7
2,097,094	+		IAI47_09905	0.27	+0.8
2,097,095	-		IAI47_09905	0.27	+3.5
2,097,095	-		IAI47_09905	0.27	-1.8
2,097,128	+		IAI47_09905	0.29	+0.8
2,097,142	+		IAI47_09905	0.30	-0.1
2,097,142	+		IAI47_09905	0.30	+1.4
2,097,142	+		IAI47_09905	0.30	+0.6
2,097,143	-		IAI47_09905	0.30	-2.3
2,097,143	-		IAI47_09905	0.30	+1.5
2,097,143	-		IAI47_09905	0.30	-0.6
2,097,147	+		IAI47_09905	0.31	-1.1
2,097,148	-		IAI47_09905	0.31	+1.3
2,097,148	-		IAI47_09905	0.31	-0.9
2,097,282	+		IAI47_09905	0.41	+1.7
2,097,282	+		IAI47_09905	0.41	+1.2
2,097,282	+		IAI47_09905	0.41	-0.2
2,097,282	+		IAI47_09905	0.41	+2.1
2,097,283	-		IAI47_09905	0.41	+0.5
2,097,283	-		IAI47_09905	0.41	+1.6
2,097,303	+		IAI47_09905	0.42	+1.1
2,097,304	-		IAI47_09905	0.43	+0.8
2,097,304	-		IAI47_09905	0.43	+1.4
2,097,328	-		IAI47_09905	0.44	+1.1
2,097,342	-		IAI47_09905	0.45	-0.6
2,097,352	+		IAI47_09905	0.46	+2.1
2,097,352	+		IAI47_09905	0.46	+0.6
2,097,352	+		IAI47_09905	0.46	+1.2
2,097,353	-		IAI47_09905	0.46	-0.6
2,097,353	-		IAI47_09905	0.46	+0.5
2,097,353	-		IAI47_09905	0.46	-1.6
2,097,353	-		IAI47_09905	0.46	+1.3
2,097,542	-		IAI47_09905	0.61	-0.3
2,097,542	-		IAI47_09905	0.61	+1.6
2,097,584	+		IAI47_09905	0.64	-0.5
2,097,584	+		IAI47_09905	0.64	-0.9
2,097,585	-		IAI47_09905	0.64	-0.3
2,097,585	-		IAI47_09905	0.64	+0.0
2,097,627	+		IAI47_09905	0.67	+0.5
2,097,627	+		IAI47_09905	0.67	+0.6
2,097,627	+		IAI47_09905	0.67	-0.5
2,097,628	-		IAI47_09905	0.67	+0.5
2,097,628	-		IAI47_09905	0.67	-0.9
2,097,641	+		IAI47_09905	0.68	+2.0
2,097,697	-		IAI47_09905	0.73	-1.1
2,097,733	+		IAI47_09905	0.75	-1.2
2,097,733	+		IAI47_09905	0.75	-2.6
2,097,733	+		IAI47_09905	0.75	-1.3
2,097,734	-		IAI47_09905	0.75	+2.0
2,097,734	-		IAI47_09905	0.75	-1.3