Strain Fitness in Pantoea sp. MT58 around IAI47_08990

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,899,395	+		IAI47_08980	0.67	+0.4
1,899,494	+		IAI47_08980	0.72	+0.8
1,899,494	+		IAI47_08980	0.72	+1.4
1,899,494	+		IAI47_08980	0.72	-0.4
1,899,494	+		IAI47_08980	0.72	+1.4
1,899,584	+		IAI47_08980	0.77	+1.7
1,899,584	+		IAI47_08980	0.77	+0.1
1,899,618	-		IAI47_08980	0.79	+0.9
1,899,646	+		IAI47_08980	0.80	+1.4
1,899,713	-		IAI47_08980	0.84	-0.3
1,899,750	+		IAI47_08980	0.85	+0.3
1,899,750	+		IAI47_08980	0.85	-0.8
1,899,750	+		IAI47_08980	0.85	-0.4
1,899,750	+		IAI47_08980	0.85	+0.9
1,899,750	+		IAI47_08980	0.85	+0.6
1,899,750	+		IAI47_08980	0.85	-0.4
1,899,751	-		IAI47_08980	0.85	+0.3
1,899,751	-		IAI47_08980	0.85	-1.9
1,899,751	-		IAI47_08980	0.85	+2.1
1,899,751	-		IAI47_08980	0.85	+0.9
1,899,751	-		IAI47_08980	0.85	+2.1
1,899,751	-		IAI47_08980	0.85	-1.0
1,899,819	-		IAI47_08980	0.89	+0.0
1,899,819	-		IAI47_08980	0.89	+2.3
1,899,851	+				+0.6
1,899,852	-				-1.1
1,899,852	-				+3.6
1,899,873	+				+0.8
1,900,041	+				-0.1
1,900,041	+				-1.9
1,900,042	-				-0.6
1,900,044	+				-0.3
1,900,044	+				-0.7
1,900,044	+				-0.7
1,900,044	+				+2.3
1,900,045	-				-0.4
1,900,120	+		IAI47_08985	0.30	-0.3
1,900,135	+		IAI47_08985	0.35	+0.5
1,900,136	-		IAI47_08985	0.36	-1.3
1,900,146	+		IAI47_08985	0.39	+0.1
1,900,146	+		IAI47_08985	0.39	-0.7
1,900,146	+		IAI47_08985	0.39	+0.1
1,900,146	+		IAI47_08985	0.39	+1.3
1,900,146	+		IAI47_08985	0.39	+0.1
1,900,147	-		IAI47_08985	0.39	-0.3
1,900,147	-		IAI47_08985	0.39	+0.7
1,900,149	+		IAI47_08985	0.40	+2.3
1,900,149	+		IAI47_08985	0.40	-1.1
1,900,149	+		IAI47_08985	0.40	-1.6
1,900,149	+		IAI47_08985	0.40	-0.1
1,900,149	+		IAI47_08985	0.40	+0.1
1,900,150	-		IAI47_08985	0.40	-1.7
1,900,150	-		IAI47_08985	0.40	-1.1
1,900,150	-		IAI47_08985	0.40	-0.2
1,900,150	-		IAI47_08985	0.40	-1.4
1,900,150	-		IAI47_08985	0.40	+2.5
1,900,150	-		IAI47_08985	0.40	-0.0
1,900,150	-		IAI47_08985	0.40	-1.1
1,900,150	-		IAI47_08985	0.40	-1.3
1,900,150	-		IAI47_08985	0.40	-1.4
1,900,150	-		IAI47_08985	0.40	-0.9
1,900,150	-		IAI47_08985	0.40	-1.7
1,900,153	+		IAI47_08985	0.41	-1.3
1,900,153	+		IAI47_08985	0.41	-1.1
1,900,154	-		IAI47_08985	0.41	-0.9
1,900,154	-		IAI47_08985	0.41	+1.0
1,900,154	-		IAI47_08985	0.41	+0.6
1,900,213	+		IAI47_08985	0.60	+2.0
1,900,214	-		IAI47_08985	0.61	-0.4
1,900,214	-		IAI47_08985	0.61	+0.9
1,900,214	-		IAI47_08985	0.61	+1.2
1,900,214	-		IAI47_08985	0.61	+1.7
1,900,228	+		IAI47_08985	0.65	+1.2
1,900,228	+		IAI47_08985	0.65	+0.4
1,900,228	+		IAI47_08985	0.65	+0.9
1,900,229	-		IAI47_08985	0.65	-0.3
1,900,229	-		IAI47_08985	0.65	-1.1
1,900,229	-		IAI47_08985	0.65	-1.1
1,900,229	-		IAI47_08985	0.65	-1.4
1,900,229	-		IAI47_08985	0.65	+1.7
1,900,229	-		IAI47_08985	0.65	+0.0
1,900,232	+		IAI47_08985	0.66	-0.9
1,900,232	+		IAI47_08985	0.66	+2.6
1,900,232	+		IAI47_08985	0.66	-0.6
1,900,233	-		IAI47_08985	0.67	-0.8
1,900,270	-		IAI47_08985	0.79	+0.2
1,900,270	-		IAI47_08985	0.79	+3.4
1,900,270	-		IAI47_08985	0.79	+0.1
1,900,334	+				+0.5
1,900,334	+				+0.9
1,900,335	-				-0.3
1,900,371	+				-0.8
1,900,434	+				+1.6
1,900,434	+				+0.9
1,900,434	+				-0.4
1,900,434	+				+0.3
1,900,434	+				-1.2
1,900,434	+				-0.9
1,900,435	-				+0.2
1,900,435	-				-1.8
1,900,435	-				-1.5
1,900,435	-				-0.8
1,900,474	+		IAI47_08990	0.13	-0.4
1,900,475	-		IAI47_08990	0.13	+0.4
1,900,475	-		IAI47_08990	0.13	+3.6
1,900,478	+		IAI47_08990	0.13	-0.6
1,900,478	+		IAI47_08990	0.13	+0.6
1,900,495	+		IAI47_08990	0.15	+0.3
1,900,495	+		IAI47_08990	0.15	+0.6
1,900,495	+		IAI47_08990	0.15	-2.3
1,900,495	+		IAI47_08990	0.15	+1.2
1,900,496	-		IAI47_08990	0.16	-0.3
1,900,496	-		IAI47_08990	0.16	+1.0
1,900,496	-		IAI47_08990	0.16	-0.9
1,900,496	-		IAI47_08990	0.16	-0.1
1,900,496	-		IAI47_08990	0.16	+1.2
1,900,496	-		IAI47_08990	0.16	+0.6
1,900,499	+		IAI47_08990	0.16	-1.1
1,900,500	-		IAI47_08990	0.16	+0.0
1,900,510	+		IAI47_08990	0.17	+1.4
1,900,510	+		IAI47_08990	0.17	-1.5
1,900,511	-		IAI47_08990	0.17	+2.0
1,900,533	+		IAI47_08990	0.20	-0.1
1,900,586	-		IAI47_08990	0.27	+3.8
1,900,673	-		IAI47_08990	0.38	-0.3
1,900,690	+		IAI47_08990	0.40	+0.9
1,900,717	+		IAI47_08990	0.43	+2.0
1,900,717	+		IAI47_08990	0.43	+0.9
1,900,717	+		IAI47_08990	0.43	-0.3
1,900,717	+		IAI47_08990	0.43	-1.9
1,900,718	-		IAI47_08990	0.43	+1.5
1,900,732	+		IAI47_08990	0.45	-0.7
1,900,747	+		IAI47_08990	0.47	-1.8
1,900,747	+		IAI47_08990	0.47	+1.9
1,900,747	+		IAI47_08990	0.47	-1.9
1,900,748	-		IAI47_08990	0.47	+0.1
1,900,748	-		IAI47_08990	0.47	-1.5
1,900,748	-		IAI47_08990	0.47	-1.5
1,900,851	+		IAI47_08990	0.60	+0.8
1,900,851	+		IAI47_08990	0.60	+0.4
1,900,852	-		IAI47_08990	0.60	+1.7
1,900,858	+		IAI47_08990	0.60	+1.6
1,900,859	-		IAI47_08990	0.61	-0.8
1,900,859	-		IAI47_08990	0.61	-2.0
1,900,859	-		IAI47_08990	0.61	+2.3
1,900,871	-		IAI47_08990	0.62	-0.8
1,900,990	-		IAI47_08990	0.77	+1.8
1,900,990	-		IAI47_08990	0.77	+0.5
1,901,010	+		IAI47_08990	0.79	-1.2
1,901,010	+		IAI47_08990	0.79	-0.9
1,901,010	+		IAI47_08990	0.79	+4.9
1,901,010	+		IAI47_08990	0.79	+0.0
1,901,011	-		IAI47_08990	0.79	+2.6
1,901,011	-		IAI47_08990	0.79	+0.0
1,901,159	-				+1.9
1,901,203	+				+0.6
1,901,226	+				+0.6
1,901,227	-				-1.0
1,901,321	-				-0.2
1,901,390	+				+0.5
1,901,417	+				-0.6
1,901,658	+				+0.3
1,901,659	-				+1.0
1,901,659	-				-0.2
1,901,659	-				+1.1
1,901,659	-				-0.6
1,901,659	-				-1.6
1,901,659	-				+0.1
1,901,659	-				+0.3
1,901,659	-				+2.2
1,901,659	-				-1.8
1,901,660	+				+0.9
1,901,660	+				-0.5
1,901,660	+				+0.5
1,901,660	+				+1.5
1,901,661	-				-0.5
1,901,661	-				-0.3
1,901,661	-				-0.5
1,901,661	-				+2.1
1,901,661	-				+1.4
1,901,661	-				+1.9
1,901,661	-				+0.5
1,901,661	-				-0.6
1,901,661	-				+2.6
1,901,661	-				+0.1
1,901,661	-				+1.4
1,901,661	-				+0.1
1,901,674	-				+1.7
1,901,674	-				+3.3
1,901,674	-				+0.7
1,901,800	-				+3.3
1,901,816	+				-0.1
1,901,816	+				-0.4
1,901,816	+				-0.0
1,901,817	-				+3.2
1,901,817	-				+1.4
1,901,817	-				-1.0
1,901,836	+				-0.1
1,901,837	-				-0.6
1,901,837	-				-0.1
1,901,924	-				-0.0
1,901,924	-				+0.5
1,901,947	+				-0.3
1,902,043	+		IAI47_09010	0.14	+0.1
1,902,043	+		IAI47_09010	0.14	-2.1
1,902,043	+		IAI47_09010	0.14	-0.8
1,902,044	-		IAI47_09010	0.14	+1.3
1,902,044	-		IAI47_09010	0.14	+0.9
1,902,109	+		IAI47_09010	0.22	+0.5
1,902,110	-		IAI47_09010	0.22	+0.7
1,902,110	-		IAI47_09010	0.22	-1.5
1,902,148	+		IAI47_09010	0.27	+2.0
1,902,148	+		IAI47_09010	0.27	-0.9
1,902,149	-		IAI47_09010	0.27	-2.0
1,902,149	-		IAI47_09010	0.27	-0.8
1,902,149	-		IAI47_09010	0.27	+2.3
1,902,149	-		IAI47_09010	0.27	-1.6