Strain Fitness in Pantoea sp. MT58 around IAI47_06300

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,279,645	+		IAI47_06290	0.64	-0.6
1,279,645	+		IAI47_06290	0.64	+2.0
1,279,646	-		IAI47_06290	0.64	-0.3
1,279,646	-		IAI47_06290	0.64	+2.9
1,279,758	+		IAI47_06290	0.81	-0.8
1,279,758	+		IAI47_06290	0.81	-0.6
1,279,759	-		IAI47_06290	0.81	+0.4
1,279,782	+		IAI47_06290	0.84	+2.9
1,279,802	-		IAI47_06290	0.87	-1.0
1,279,802	-		IAI47_06290	0.87	+1.4
1,279,855	+				+0.2
1,279,855	+				+0.9
1,279,856	-				-0.7
1,279,856	-				+1.1
1,279,857	+				+1.8
1,279,857	+				+2.6
1,279,857	+				+1.6
1,279,857	+				-1.5
1,279,857	+				+0.9
1,279,858	-				-1.8
1,279,858	-				-0.4
1,279,858	-				+2.4
1,279,883	-				+0.7
1,279,883	-				-0.5
1,279,894	+				+0.1
1,279,905	-				+0.8
1,279,942	+				-1.5
1,279,942	+				+0.3
1,279,955	-		IAI47_06295	0.10	-0.3
1,280,036	-		IAI47_06295	0.21	+2.2
1,280,044	+		IAI47_06295	0.22	+0.4
1,280,068	+		IAI47_06295	0.26	+0.8
1,280,068	+		IAI47_06295	0.26	-1.6
1,280,069	-		IAI47_06295	0.26	-2.1
1,280,069	-		IAI47_06295	0.26	+0.5
1,280,069	-		IAI47_06295	0.26	+1.2
1,280,072	+		IAI47_06295	0.26	+0.6
1,280,072	+		IAI47_06295	0.26	-0.4
1,280,072	+		IAI47_06295	0.26	+0.2
1,280,072	+		IAI47_06295	0.26	+0.4
1,280,073	-		IAI47_06295	0.26	-1.1
1,280,073	-		IAI47_06295	0.26	+0.6
1,280,073	-		IAI47_06295	0.26	-1.5
1,280,073	-		IAI47_06295	0.26	-2.8
1,280,096	+		IAI47_06295	0.30	+1.3
1,280,096	+		IAI47_06295	0.30	-0.8
1,280,096	+		IAI47_06295	0.30	+0.8
1,280,096	+		IAI47_06295	0.30	+1.9
1,280,096	+		IAI47_06295	0.30	+2.5
1,280,096	+		IAI47_06295	0.30	-0.4
1,280,097	-		IAI47_06295	0.30	+0.3
1,280,100	+		IAI47_06295	0.30	-2.2
1,280,100	+		IAI47_06295	0.30	+0.9
1,280,100	+		IAI47_06295	0.30	+2.0
1,280,100	+		IAI47_06295	0.30	-0.9
1,280,100	+		IAI47_06295	0.30	+1.2
1,280,100	+		IAI47_06295	0.30	-1.1
1,280,100	+		IAI47_06295	0.30	+0.7
1,280,100	+		IAI47_06295	0.30	+0.8
1,280,117	+		IAI47_06295	0.33	+0.0
1,280,117	+		IAI47_06295	0.33	-0.0
1,280,118	-		IAI47_06295	0.33	+0.7
1,280,118	-		IAI47_06295	0.33	-1.1
1,280,118	-		IAI47_06295	0.33	-1.3
1,280,118	-		IAI47_06295	0.33	-1.6
1,280,129	+		IAI47_06295	0.34	-1.3
1,280,129	+		IAI47_06295	0.34	-1.8
1,280,129	+		IAI47_06295	0.34	-2.0
1,280,129	+		IAI47_06295	0.34	-1.7
1,280,129	+		IAI47_06295	0.34	-0.7
1,280,130	-		IAI47_06295	0.34	+1.7
1,280,130	-		IAI47_06295	0.34	-1.3
1,280,130	-		IAI47_06295	0.34	+0.5
1,280,130	-		IAI47_06295	0.34	-0.4
1,280,130	-		IAI47_06295	0.34	+0.7
1,280,130	-		IAI47_06295	0.34	+0.0
1,280,130	-		IAI47_06295	0.34	+1.1
1,280,194	+		IAI47_06295	0.43	-0.9
1,280,194	+		IAI47_06295	0.43	+0.4
1,280,194	+		IAI47_06295	0.43	-1.4
1,280,194	+		IAI47_06295	0.43	-1.1
1,280,194	+		IAI47_06295	0.43	-2.1
1,280,195	-		IAI47_06295	0.44	-1.4
1,280,195	-		IAI47_06295	0.44	-0.1
1,280,195	-		IAI47_06295	0.44	+3.2
1,280,195	-		IAI47_06295	0.44	+1.1
1,280,195	-		IAI47_06295	0.44	+0.0
1,280,195	-		IAI47_06295	0.44	+1.6
1,280,218	+		IAI47_06295	0.47	-0.5
1,280,218	+		IAI47_06295	0.47	-2.1
1,280,218	+		IAI47_06295	0.47	+1.3
1,280,218	+		IAI47_06295	0.47	+0.9
1,280,219	-		IAI47_06295	0.47	+0.4
1,280,219	-		IAI47_06295	0.47	+2.2
1,280,228	+		IAI47_06295	0.48	+0.0
1,280,228	+		IAI47_06295	0.48	-1.8
1,280,228	+		IAI47_06295	0.48	-1.5
1,280,228	+		IAI47_06295	0.48	-1.4
1,280,228	+		IAI47_06295	0.48	-1.5
1,280,228	+		IAI47_06295	0.48	-0.9
1,280,229	-		IAI47_06295	0.48	+0.7
1,280,229	-		IAI47_06295	0.48	+2.3
1,280,229	-		IAI47_06295	0.48	-0.9
1,280,229	-		IAI47_06295	0.48	+0.0
1,280,229	-		IAI47_06295	0.48	+0.1
1,280,297	+		IAI47_06295	0.58	-1.2
1,280,297	+		IAI47_06295	0.58	-0.6
1,280,314	+		IAI47_06295	0.60	-1.1
1,280,314	+		IAI47_06295	0.60	-1.8
1,280,333	-		IAI47_06295	0.63	-1.5
1,280,333	-		IAI47_06295	0.63	-1.7
1,280,333	-		IAI47_06295	0.63	+0.4
1,280,369	+		IAI47_06295	0.68	-0.6
1,280,369	+		IAI47_06295	0.68	-2.4
1,280,369	+		IAI47_06295	0.68	-0.5
1,280,370	-		IAI47_06295	0.68	-1.2
1,280,370	-		IAI47_06295	0.68	-0.9
1,280,370	-		IAI47_06295	0.68	-1.0
1,280,370	-		IAI47_06295	0.68	-0.5
1,280,375	-		IAI47_06295	0.69	-0.5
1,280,455	+		IAI47_06295	0.80	+0.3
1,280,456	-		IAI47_06295	0.80	-1.1
1,280,456	-		IAI47_06295	0.80	-1.2
1,280,458	+		IAI47_06295	0.80	+0.3
1,280,458	+		IAI47_06295	0.80	+1.1
1,280,458	+		IAI47_06295	0.80	-1.5
1,280,459	-		IAI47_06295	0.80	-2.0
1,280,471	+		IAI47_06295	0.82	+0.8
1,280,472	-		IAI47_06295	0.82	-2.0
1,280,472	-		IAI47_06295	0.82	+2.0
1,280,508	+		IAI47_06295	0.87	-2.2
1,280,508	+		IAI47_06295	0.87	+0.3
1,280,508	+		IAI47_06295	0.87	+2.3
1,280,508	+		IAI47_06295	0.87	-0.8
1,280,508	+		IAI47_06295	0.87	-0.7
1,280,509	-		IAI47_06295	0.87	-0.9
1,280,509	-		IAI47_06295	0.87	-2.4
1,280,510	+		IAI47_06295	0.87	+0.2
1,280,510	+		IAI47_06295	0.87	+0.8
1,280,510	+		IAI47_06295	0.87	+1.0
1,280,510	+		IAI47_06295	0.87	-1.5
1,280,511	-		IAI47_06295	0.88	+1.2
1,280,511	-		IAI47_06295	0.88	-0.9
1,280,518	+		IAI47_06295	0.89	+0.7
1,280,519	-		IAI47_06295	0.89	+2.8
1,280,519	-		IAI47_06295	0.89	-0.9
1,280,519	-		IAI47_06295	0.89	-1.2
1,280,519	-		IAI47_06295	0.89	+1.7
1,280,519	-		IAI47_06295	0.89	-1.1
1,280,519	-		IAI47_06295	0.89	-0.5
1,280,519	-		IAI47_06295	0.89	-1.5
1,280,525	+		IAI47_06295	0.90	+0.4
1,280,526	-		IAI47_06295	0.90	+1.7
1,280,526	-		IAI47_06295	0.90	+0.3
1,280,526	-		IAI47_06295	0.90	+0.2
1,280,526	-		IAI47_06295	0.90	-1.9
1,280,526	-		IAI47_06295	0.90	+0.3
1,280,526	-		IAI47_06295	0.90	+1.1
1,280,601	+				-0.7
1,280,601	+				+2.8
1,280,602	-				-0.6
1,280,607	+				-1.9
1,280,607	+				+1.4
1,280,607	+				+0.0
1,280,607	+				-1.7
1,280,607	+				-0.4
1,280,607	+				-0.9
1,280,608	-				+0.8
1,280,608	-				-0.3
1,280,608	-				-0.7
1,280,608	-				+0.2
1,280,608	-				+0.2
1,280,608	-				-2.0
1,280,608	-				-2.1
1,280,608	-				+0.1
1,280,608	-				+1.3
1,280,619	+				-0.8
1,280,619	+				-1.3
1,280,619	+				-1.7
1,280,620	-				-0.3
1,280,625	-				+0.3
1,280,625	-				-2.0
1,280,625	-				-0.5
1,280,625	-				+0.7
1,280,643	+				-1.5
1,280,643	+				-0.5
1,280,644	-				-1.9
1,280,644	-				-0.3
1,280,644	-				-0.6
1,280,743	-		IAI47_06300	0.17	+0.0
1,280,750	+		IAI47_06300	0.18	+0.4
1,280,750	+		IAI47_06300	0.18	-0.3
1,280,750	+		IAI47_06300	0.18	-0.8
1,280,751	-		IAI47_06300	0.18	+1.4
1,280,751	-		IAI47_06300	0.18	-0.1
1,280,819	+		IAI47_06300	0.27	-0.9
1,280,819	+		IAI47_06300	0.27	-1.1
1,280,820	-		IAI47_06300	0.27	-1.2
1,280,820	-		IAI47_06300	0.27	-0.5
1,280,820	-		IAI47_06300	0.27	+0.1
1,280,820	-		IAI47_06300	0.27	+0.9
1,280,820	-		IAI47_06300	0.27	-1.5
1,280,844	+		IAI47_06300	0.30	+0.1
1,280,845	-		IAI47_06300	0.31	+0.3
1,280,845	-		IAI47_06300	0.31	-2.1
1,280,845	-		IAI47_06300	0.31	+1.1
1,280,910	+		IAI47_06300	0.39	-0.7
1,280,910	+		IAI47_06300	0.39	+0.9
1,280,911	-		IAI47_06300	0.39	+2.0
1,280,911	-		IAI47_06300	0.39	+0.6
1,280,911	-		IAI47_06300	0.39	-1.0
1,281,011	-		IAI47_06300	0.52	-0.5
1,281,019	-		IAI47_06300	0.53	-1.3
1,281,019	-		IAI47_06300	0.53	-1.2
1,281,213	+		IAI47_06300	0.78	-1.0
1,281,213	+		IAI47_06300	0.78	+0.7
1,281,214	-		IAI47_06300	0.78	-2.1
1,281,351	-				+0.8
1,281,351	-				-1.5
1,281,379	+				-1.1
1,281,379	+				+3.0
1,281,379	+				-1.1
1,281,379	+				-2.1
1,281,380	-				+1.9
1,281,420	-				+0.3
1,281,459	-				-1.9
1,281,459	-				+0.4
1,281,459	-				-0.1
1,281,552	+		IAI47_06305	0.15	-0.2
1,281,552	+		IAI47_06305	0.15	-1.3
1,281,552	+		IAI47_06305	0.15	+0.9
1,281,553	-		IAI47_06305	0.15	-0.7
1,281,570	+		IAI47_06305	0.17	+0.9
1,281,570	+		IAI47_06305	0.17	+1.9
1,281,571	-		IAI47_06305	0.17	-0.6
1,281,571	-		IAI47_06305	0.17	+0.0
1,281,576	+		IAI47_06305	0.18	+0.5
1,281,576	+		IAI47_06305	0.18	+1.6
1,281,576	+		IAI47_06305	0.18	-1.7
1,281,576	+		IAI47_06305	0.18	-0.9
1,281,577	-		IAI47_06305	0.18	+0.5
1,281,577	-		IAI47_06305	0.18	+0.4
1,281,594	+		IAI47_06305	0.20	+2.3
1,281,628	-		IAI47_06305	0.23	-2.2
1,281,628	-		IAI47_06305	0.23	-1.6
1,281,638	+		IAI47_06305	0.24	+2.2
1,281,639	-		IAI47_06305	0.25	+0.6
1,281,694	-		IAI47_06305	0.31	+0.6
1,281,694	-		IAI47_06305	0.31	-2.4
1,281,694	-		IAI47_06305	0.31	+2.9
1,281,694	-		IAI47_06305	0.31	-0.5
1,281,717	+		IAI47_06305	0.33	-0.7
1,281,717	+		IAI47_06305	0.33	+2.2
1,281,717	+		IAI47_06305	0.33	+2.4
1,281,718	-		IAI47_06305	0.33	-0.0
1,281,718	-		IAI47_06305	0.33	-1.0
1,281,734	+		IAI47_06305	0.35	-1.8
1,281,734	+		IAI47_06305	0.35	+0.2
1,281,734	+		IAI47_06305	0.35	-0.4
1,281,734	+		IAI47_06305	0.35	-1.1
1,281,735	-		IAI47_06305	0.35	+1.7
1,281,735	-		IAI47_06305	0.35	-0.2
1,281,735	-		IAI47_06305	0.35	-0.6
1,281,735	-		IAI47_06305	0.35	-1.1
1,281,735	-		IAI47_06305	0.35	-2.7
1,281,735	-		IAI47_06305	0.35	+2.1
1,281,735	-		IAI47_06305	0.35	-1.0
1,281,735	-		IAI47_06305	0.35	+0.4
1,281,741	+		IAI47_06305	0.36	+2.9
1,281,741	+		IAI47_06305	0.36	-1.7
1,281,742	-		IAI47_06305	0.36	+1.0
1,281,742	-		IAI47_06305	0.36	+0.8
1,281,774	+		IAI47_06305	0.40	+0.3
1,281,774	+		IAI47_06305	0.40	-2.5
1,281,774	+		IAI47_06305	0.40	-1.9
1,281,775	-		IAI47_06305	0.40	-1.2
1,281,775	-		IAI47_06305	0.40	-0.3
1,281,775	-		IAI47_06305	0.40	+0.5
1,281,821	-		IAI47_06305	0.45	+2.1
1,281,991	+		IAI47_06305	0.64	-0.1
1,281,991	+		IAI47_06305	0.64	-1.1
1,281,991	+		IAI47_06305	0.64	+0.9
1,281,992	-		IAI47_06305	0.64	+2.1
1,281,994	+		IAI47_06305	0.64	+0.9
1,281,994	+		IAI47_06305	0.64	+2.2
1,281,994	+		IAI47_06305	0.64	-0.5
1,281,995	-		IAI47_06305	0.64	-2.0
1,281,995	-		IAI47_06305	0.64	-1.1
1,282,009	-		IAI47_06305	0.66	+0.7
1,282,046	-		IAI47_06305	0.70	-0.4
1,282,125	+		IAI47_06305	0.79	-1.4
1,282,125	+		IAI47_06305	0.79	+1.0
1,282,126	-		IAI47_06305	0.79	+1.7
1,282,229	-				-1.1
1,282,260	+				-2.0
1,282,260	+				+1.2
1,282,260	+				+0.3
1,282,260	+				+0.3
1,282,260	+				-1.4
1,282,261	-				+0.6
1,282,261	-				+0.8
1,282,261	-				+0.4
1,282,261	-				-0.7
1,282,261	-				-1.5
1,282,261	-				-0.5
1,282,261	-				-0.3
1,282,261	-				-1.1
1,282,261	-				+0.4
1,282,302	+				+0.6
1,282,305	+				-0.8
1,282,305	+				+0.4
1,282,305	+				-0.6
1,282,306	-				-0.8
1,282,306	-				+0.4
1,282,344	-				-0.8
1,282,344	-				-0.1
1,282,344	-				-0.3
1,282,361	+				+1.2
1,282,361	+				+1.5
1,282,361	+				+0.9
1,282,361	+				-0.5
1,282,361	+				+0.9
1,282,361	+				+0.5
1,282,361	+				-0.3
1,282,361	+				-0.3
1,282,362	-				-0.4
1,282,362	-				-0.1
1,282,362	-				+0.1
1,282,362	-				+1.6
1,282,362	-				+0.4
1,282,380	+				-2.0
1,282,380	+				+1.5
1,282,380	+				-0.7
1,282,380	+				-0.8
1,282,380	+				-0.9
1,282,380	+				+0.9
1,282,380	+				-0.3
1,282,380	+				-0.5
1,282,381	-				+1.6
1,282,381	-				+0.3
1,282,381	-				-2.0
1,282,381	-				+1.0
1,282,381	-				-0.4