Strain Fitness in Pantoea sp. MT58 around IAI47_03525

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03515 and IAI47_03520 overlap by 4 nucleotidesIAI47_03520 and IAI47_03525 overlap by 8 nucleotidesIAI47_03525 and IAI47_03530 overlap by 1 nucleotidesIAI47_03530 and IAI47_03535 are separated by 91 nucleotides IAI47_03515: IAI47_03515 - hemin-degrading factor, at 733,849 to 734,880 _03515 IAI47_03520: IAI47_03520 - hemin ABC transporter substrate-binding protein, at 734,877 to 735,698 _03520 IAI47_03525: IAI47_03525 - iron ABC transporter permease, at 735,691 to 736,689 _03525 IAI47_03530: IAI47_03530 - heme ABC transporter ATP-binding protein, at 736,689 to 737,465 _03530 IAI47_03535: IAI47_03535 - CinA family protein, at 737,557 to 738,054 _03535 Position (kb) 735 736 737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 734.714 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.746 kb on - strand, within IAI47_03515at 734.794 kb on + strandat 734.794 kb on + strandat 734.795 kb on - strandat 734.815 kb on - strandat 734.896 kb on + strandat 734.896 kb on + strandat 734.897 kb on - strandat 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.973 kb on + strand, within IAI47_03520at 734.973 kb on + strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.998 kb on + strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 735.060 kb on + strand, within IAI47_03520at 735.060 kb on + strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.228 kb on - strand, within IAI47_03520at 735.228 kb on - strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.451 kb on - strand, within IAI47_03520at 735.503 kb on - strand, within IAI47_03520at 735.557 kb on - strand, within IAI47_03520at 735.641 kb on + strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.696 kb on + strandat 735.697 kb on - strandat 735.703 kb on - strandat 735.703 kb on - strandat 735.800 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.931 kb on - strand, within IAI47_03525at 736.002 kb on + strand, within IAI47_03525at 736.002 kb on + strand, within IAI47_03525at 736.031 kb on + strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.040 kb on + strand, within IAI47_03525at 736.144 kb on - strand, within IAI47_03525at 736.153 kb on - strand, within IAI47_03525at 736.175 kb on + strand, within IAI47_03525at 736.310 kb on + strand, within IAI47_03525at 736.332 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.390 kb on - strand, within IAI47_03525at 736.390 kb on - strand, within IAI47_03525at 736.431 kb on + strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.552 kb on - strand, within IAI47_03525at 736.552 kb on - strand, within IAI47_03525at 736.620 kb on - strandat 736.783 kb on + strand, within IAI47_03530at 736.812 kb on - strand, within IAI47_03530at 736.822 kb on + strand, within IAI47_03530at 736.822 kb on + strand, within IAI47_03530at 736.823 kb on - strand, within IAI47_03530at 737.234 kb on - strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.271 kb on - strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.289 kb on - strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.397 kb on + strandat 737.417 kb on - strandat 737.460 kb on - strandat 737.464 kb on - strandat 737.520 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.523 kb on - strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.556 kb on - strandat 737.556 kb on - strandat 737.598 kb on + strandat 737.598 kb on + strandat 737.599 kb on - strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.604 kb on - strandat 737.604 kb on - strandat 737.644 kb on - strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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734,714 + IAI47_03515 0.84 -2.2
734,745 + IAI47_03515 0.87 -0.5
734,745 + IAI47_03515 0.87 -2.5
734,745 + IAI47_03515 0.87 +0.3
734,746 - IAI47_03515 0.87 -1.1
734,794 + -0.7
734,794 + +2.3
734,795 - +1.1
734,815 - -2.9
734,896 + -0.0
734,896 + -0.0
734,897 - -1.6
734,969 + IAI47_03520 0.11 +0.3
734,969 + IAI47_03520 0.11 +0.7
734,969 + IAI47_03520 0.11 +0.4
734,969 + IAI47_03520 0.11 -0.7
734,969 + IAI47_03520 0.11 +0.3
734,969 + IAI47_03520 0.11 +1.0
734,969 + IAI47_03520 0.11 +1.0
734,969 + IAI47_03520 0.11 +1.9
734,969 + IAI47_03520 0.11 +0.4
734,970 - IAI47_03520 0.11 -2.3
734,970 - IAI47_03520 0.11 +0.4
734,970 - IAI47_03520 0.11 +0.5
734,970 - IAI47_03520 0.11 +1.1
734,970 - IAI47_03520 0.11 +0.3
734,970 - IAI47_03520 0.11 -1.1
734,970 - IAI47_03520 0.11 -2.6
734,970 - IAI47_03520 0.11 -2.3
734,973 + IAI47_03520 0.12 +1.7
734,973 + IAI47_03520 0.12 -1.5
734,974 - IAI47_03520 0.12 -2.0
734,974 - IAI47_03520 0.12 +0.2
734,974 - IAI47_03520 0.12 -1.1
734,974 - IAI47_03520 0.12 -0.1
734,974 - IAI47_03520 0.12 +0.6
734,974 - IAI47_03520 0.12 +0.1
734,998 + IAI47_03520 0.15 +3.0
734,999 - IAI47_03520 0.15 -0.2
734,999 - IAI47_03520 0.15 +1.3
734,999 - IAI47_03520 0.15 +1.9
735,060 + IAI47_03520 0.22 +0.4
735,060 + IAI47_03520 0.22 +2.3
735,061 - IAI47_03520 0.22 -2.0
735,061 - IAI47_03520 0.22 +1.9
735,061 - IAI47_03520 0.22 -0.7
735,061 - IAI47_03520 0.22 -1.5
735,061 - IAI47_03520 0.22 +3.2
735,062 + IAI47_03520 0.23 -0.5
735,062 + IAI47_03520 0.23 -0.9
735,062 + IAI47_03520 0.23 +0.5
735,062 + IAI47_03520 0.23 -0.2
735,062 + IAI47_03520 0.23 -1.2
735,062 + IAI47_03520 0.23 +0.4
735,062 + IAI47_03520 0.23 +0.4
735,062 + IAI47_03520 0.23 -0.5
735,062 + IAI47_03520 0.23 -0.8
735,062 + IAI47_03520 0.23 +0.2
735,063 - IAI47_03520 0.23 +1.8
735,063 - IAI47_03520 0.23 +1.0
735,063 - IAI47_03520 0.23 -1.5
735,063 - IAI47_03520 0.23 +0.7
735,063 - IAI47_03520 0.23 -1.4
735,063 - IAI47_03520 0.23 -0.3
735,063 - IAI47_03520 0.23 -0.1
735,063 - IAI47_03520 0.23 +3.4
735,063 - IAI47_03520 0.23 -0.5
735,063 - IAI47_03520 0.23 +0.4
735,063 - IAI47_03520 0.23 +0.3
735,063 - IAI47_03520 0.23 -0.7
735,228 - IAI47_03520 0.43 +1.8
735,228 - IAI47_03520 0.43 +1.6
735,339 + IAI47_03520 0.56 -0.6
735,339 + IAI47_03520 0.56 -0.5
735,339 + IAI47_03520 0.56 +1.2
735,339 + IAI47_03520 0.56 -0.3
735,339 + IAI47_03520 0.56 +1.1
735,339 + IAI47_03520 0.56 -1.9
735,339 + IAI47_03520 0.56 -0.7
735,339 + IAI47_03520 0.56 -1.1
735,340 - IAI47_03520 0.56 +1.9
735,340 - IAI47_03520 0.56 +1.2
735,340 - IAI47_03520 0.56 +0.8
735,340 - IAI47_03520 0.56 +0.4
735,340 - IAI47_03520 0.56 +1.8
735,340 - IAI47_03520 0.56 -0.7
735,340 - IAI47_03520 0.56 -1.3
735,432 - IAI47_03520 0.68 -1.3
735,432 - IAI47_03520 0.68 -1.5
735,432 - IAI47_03520 0.68 +1.1
735,450 + IAI47_03520 0.70 -0.8
735,450 + IAI47_03520 0.70 -1.5
735,450 + IAI47_03520 0.70 -1.4
735,451 - IAI47_03520 0.70 +1.7
735,503 - IAI47_03520 0.76 -0.3
735,557 - IAI47_03520 0.83 +1.3
735,641 + -1.1
735,642 - +1.1
735,642 - -0.3
735,642 - +0.1
735,642 - -2.5
735,696 + -0.3
735,697 - -0.0
735,703 - -0.3
735,703 - -0.8
735,800 + IAI47_03525 0.11 +0.8
735,825 + IAI47_03525 0.13 +0.5
735,825 + IAI47_03525 0.13 -0.9
735,825 + IAI47_03525 0.13 +1.2
735,826 - IAI47_03525 0.14 +1.2
735,826 - IAI47_03525 0.14 -2.1
735,826 - IAI47_03525 0.14 -1.8
735,867 - IAI47_03525 0.18 -1.5
735,867 - IAI47_03525 0.18 +2.7
735,867 - IAI47_03525 0.18 -0.6
735,931 - IAI47_03525 0.24 +1.6
736,002 + IAI47_03525 0.31 -1.0
736,002 + IAI47_03525 0.31 +0.4
736,031 + IAI47_03525 0.34 +1.5
736,032 - IAI47_03525 0.34 +3.2
736,032 - IAI47_03525 0.34 -2.1
736,032 - IAI47_03525 0.34 -0.8
736,032 - IAI47_03525 0.34 -1.3
736,032 - IAI47_03525 0.34 +0.6
736,032 - IAI47_03525 0.34 +1.4
736,040 + IAI47_03525 0.35 +0.1
736,144 - IAI47_03525 0.45 -1.8
736,153 - IAI47_03525 0.46 +0.4
736,175 + IAI47_03525 0.48 +0.5
736,310 + IAI47_03525 0.62 +1.6
736,332 + IAI47_03525 0.64 -0.6
736,366 + IAI47_03525 0.68 +0.3
736,366 + IAI47_03525 0.68 +0.1
736,366 + IAI47_03525 0.68 +0.4
736,367 - IAI47_03525 0.68 -1.9
736,367 - IAI47_03525 0.68 +0.7
736,367 - IAI47_03525 0.68 -0.7
736,367 - IAI47_03525 0.68 -0.1
736,390 - IAI47_03525 0.70 -1.9
736,390 - IAI47_03525 0.70 -0.5
736,431 + IAI47_03525 0.74 -0.0
736,432 - IAI47_03525 0.74 +0.5
736,432 - IAI47_03525 0.74 -0.7
736,432 - IAI47_03525 0.74 +0.9
736,551 + IAI47_03525 0.86 -1.0
736,551 + IAI47_03525 0.86 -1.5
736,551 + IAI47_03525 0.86 +0.4
736,552 - IAI47_03525 0.86 -1.4
736,552 - IAI47_03525 0.86 +1.5
736,620 - +1.1
736,783 + IAI47_03530 0.12 +0.1
736,812 - IAI47_03530 0.16 +1.4
736,822 + IAI47_03530 0.17 -2.0
736,822 + IAI47_03530 0.17 +0.8
736,823 - IAI47_03530 0.17 -2.0
737,234 - IAI47_03530 0.70 -0.2
737,270 + IAI47_03530 0.75 +0.4
737,270 + IAI47_03530 0.75 -2.0
737,271 - IAI47_03530 0.75 +0.8
737,278 + IAI47_03530 0.76 -2.0
737,278 + IAI47_03530 0.76 +1.2
737,278 + IAI47_03530 0.76 +0.8
737,278 + IAI47_03530 0.76 -1.7
737,278 + IAI47_03530 0.76 +0.9
737,278 + IAI47_03530 0.76 +3.4
737,279 - IAI47_03530 0.76 -0.7
737,279 - IAI47_03530 0.76 +0.2
737,279 - IAI47_03530 0.76 -0.4
737,279 - IAI47_03530 0.76 +0.6
737,279 - IAI47_03530 0.76 -0.7
737,279 - IAI47_03530 0.76 -1.4
737,279 - IAI47_03530 0.76 -0.9
737,279 - IAI47_03530 0.76 +1.3
737,288 + IAI47_03530 0.77 -1.2
737,288 + IAI47_03530 0.77 -2.2
737,289 - IAI47_03530 0.77 -0.7
737,317 + IAI47_03530 0.81 +1.7
737,317 + IAI47_03530 0.81 +0.6
737,318 - IAI47_03530 0.81 +0.7
737,318 - IAI47_03530 0.81 +2.0
737,318 - IAI47_03530 0.81 -1.6
737,397 + +2.3
737,417 - -1.6
737,460 - -1.5
737,464 - +0.3
737,520 + -0.7
737,522 + +1.1
737,522 + +1.3
737,522 + +0.9
737,522 + +1.1
737,522 + +1.3
737,523 - -1.9
737,555 + -0.5
737,555 + +0.2
737,555 + -0.3
737,556 - -0.8
737,556 - -3.0
737,598 + -0.6
737,598 + -2.4
737,599 - +0.9
737,603 + -1.1
737,603 + +1.1
737,603 + +1.7
737,604 - +0.3
737,604 - +1.0
737,644 - IAI47_03535 0.17 +0.4
737,661 + IAI47_03535 0.21 -1.3
737,661 + IAI47_03535 0.21 -0.1
737,661 + IAI47_03535 0.21 +0.8
737,662 - IAI47_03535 0.21 -2.2
737,662 - IAI47_03535 0.21 +0.0
737,662 - IAI47_03535 0.21 -1.5
737,662 - IAI47_03535 0.21 -0.6

Or see this region's nucleotide sequence