Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03285 and IAI47_03290 overlap by 4 nucleotides IAI47_03290 and IAI47_03295 are separated by 309 nucleotides
IAI47_03285: IAI47_03285 - PLP-dependent aminotransferase family protein, at 684,077 to 685,480
_03285
IAI47_03290: IAI47_03290 - hypothetical protein, at 685,477 to 685,959
_03290
IAI47_03295: IAI47_03295 - cupin domain-containing protein, at 686,269 to 686,880
_03295
Position (kb) 685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 684.540 kb on - strand, within IAI47_03285 at 684.540 kb on - strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.644 kb on + strand, within IAI47_03285 at 684.644 kb on + strand, within IAI47_03285 at 684.645 kb on - strand, within IAI47_03285 at 684.652 kb on - strand, within IAI47_03285 at 684.672 kb on - strand, within IAI47_03285 at 684.837 kb on + strand, within IAI47_03285 at 684.837 kb on + strand, within IAI47_03285 at 684.838 kb on - strand, within IAI47_03285 at 684.838 kb on - strand, within IAI47_03285 at 684.851 kb on - strand, within IAI47_03285 at 684.851 kb on - strand, within IAI47_03285 at 684.870 kb on + strand, within IAI47_03285 at 684.870 kb on + strand, within IAI47_03285 at 684.871 kb on - strand, within IAI47_03285 at 684.871 kb on - strand, within IAI47_03285 at 684.911 kb on + strand, within IAI47_03285 at 684.911 kb on + strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.952 kb on + strand, within IAI47_03285 at 685.094 kb on - strand, within IAI47_03285 at 685.094 kb on - strand, within IAI47_03285 at 685.159 kb on + strand, within IAI47_03285 at 685.159 kb on + strand, within IAI47_03285 at 685.159 kb on + strand, within IAI47_03285 at 685.160 kb on - strand, within IAI47_03285 at 685.160 kb on - strand, within IAI47_03285 at 685.221 kb on + strand, within IAI47_03285 at 685.291 kb on + strand, within IAI47_03285 at 685.291 kb on + strand, within IAI47_03285 at 685.291 kb on + strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.292 kb on - strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.294 kb on + strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.295 kb on - strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.297 kb on + strand, within IAI47_03285 at 685.298 kb on - strand, within IAI47_03285 at 685.298 kb on - strand, within IAI47_03285 at 685.311 kb on - strand, within IAI47_03285 at 685.357 kb on - strand at 685.357 kb on - strand at 685.357 kb on - strand at 685.399 kb on + strand at 685.437 kb on + strand at 685.438 kb on - strand at 685.438 kb on - strand at 685.479 kb on - strand at 685.479 kb on - strand at 685.514 kb on + strand at 685.514 kb on + strand at 685.514 kb on + strand at 685.514 kb on + strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.517 kb on + strand at 685.517 kb on + strand at 685.517 kb on + strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.518 kb on - strand at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.526 kb on + strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.527 kb on - strand, within IAI47_03290 at 685.617 kb on + strand, within IAI47_03290 at 685.618 kb on - strand, within IAI47_03290 at 685.618 kb on - strand, within IAI47_03290 at 685.643 kb on + strand, within IAI47_03290 at 685.643 kb on + strand, within IAI47_03290 at 685.643 kb on + strand, within IAI47_03290 at 685.643 kb on + strand, within IAI47_03290 at 685.643 kb on + strand, within IAI47_03290 at 685.644 kb on - strand, within IAI47_03290 at 685.644 kb on - strand, within IAI47_03290 at 685.647 kb on - strand, within IAI47_03290 at 685.661 kb on + strand, within IAI47_03290 at 685.661 kb on + strand, within IAI47_03290 at 685.689 kb on + strand, within IAI47_03290 at 685.689 kb on + strand, within IAI47_03290 at 685.689 kb on + strand, within IAI47_03290 at 685.689 kb on + strand, within IAI47_03290 at 685.690 kb on - strand, within IAI47_03290 at 685.690 kb on - strand, within IAI47_03290 at 685.703 kb on + strand, within IAI47_03290 at 685.823 kb on + strand, within IAI47_03290 at 685.823 kb on + strand, within IAI47_03290 at 685.824 kb on - strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.832 kb on + strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.833 kb on - strand, within IAI47_03290 at 685.915 kb on - strand at 685.915 kb on - strand at 685.920 kb on + strand at 685.947 kb on + strand at 685.947 kb on + strand at 685.947 kb on + strand at 685.950 kb on + strand at 685.950 kb on + strand at 685.951 kb on - strand at 685.951 kb on - strand at 685.951 kb on - strand at 685.951 kb on - strand at 685.964 kb on + strand at 685.982 kb on + strand at 685.982 kb on + strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.983 kb on - strand at 685.986 kb on + strand at 685.987 kb on - strand at 685.989 kb on + strand at 685.989 kb on + strand at 685.989 kb on + strand at 685.990 kb on - strand at 685.990 kb on - strand at 685.990 kb on - strand at 685.990 kb on - strand at 685.998 kb on + strand at 685.998 kb on + strand at 685.998 kb on + strand at 685.999 kb on - strand at 686.011 kb on + strand at 686.012 kb on - strand at 686.012 kb on - strand at 686.012 kb on - strand at 686.012 kb on - strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.051 kb on + strand at 686.052 kb on - strand at 686.052 kb on - strand at 686.147 kb on - strand at 686.147 kb on - strand at 686.170 kb on + strand at 686.180 kb on + strand at 686.181 kb on - strand at 686.181 kb on - strand at 686.190 kb on - strand at 686.246 kb on + strand at 686.246 kb on + strand at 686.246 kb on + strand at 686.247 kb on - strand at 686.247 kb on - strand at 686.247 kb on - strand at 686.249 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.268 kb on + strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.269 kb on - strand at 686.297 kb on + strand at 686.297 kb on + strand at 686.297 kb on + strand at 686.297 kb on + strand at 686.297 kb on + strand at 686.297 kb on + strand at 686.298 kb on - strand at 686.298 kb on - strand at 686.298 kb on - strand at 686.343 kb on + strand, within IAI47_03295 at 686.343 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.358 kb on + strand, within IAI47_03295 at 686.359 kb on - strand, within IAI47_03295 at 686.361 kb on - strand, within IAI47_03295 at 686.399 kb on + strand, within IAI47_03295 at 686.400 kb on - strand, within IAI47_03295 at 686.400 kb on - strand, within IAI47_03295 at 686.409 kb on + strand, within IAI47_03295 at 686.410 kb on - strand, within IAI47_03295 at 686.576 kb on + strand, within IAI47_03295 at 686.576 kb on + strand, within IAI47_03295 at 686.577 kb on - strand, within IAI47_03295 at 686.577 kb on - strand, within IAI47_03295 at 686.577 kb on - strand, within IAI47_03295 at 686.579 kb on + strand, within IAI47_03295 at 686.579 kb on + strand, within IAI47_03295 at 686.579 kb on + strand, within IAI47_03295 at 686.579 kb on + strand, within IAI47_03295 at 686.579 kb on + strand, within IAI47_03295 at 686.580 kb on - strand, within IAI47_03295 at 686.580 kb on - strand, within IAI47_03295 at 686.580 kb on - strand, within IAI47_03295 at 686.580 kb on - strand, within IAI47_03295 at 686.699 kb on - strand, within IAI47_03295 at 686.742 kb on + strand, within IAI47_03295 at 686.858 kb on + strand at 686.858 kb on + strand at 686.858 kb on + strand at 686.859 kb on - strand at 686.859 kb on - strand at 686.859 kb on - strand at 686.879 kb on - strand at 686.879 kb on - strand at 686.879 kb on - strand at 686.879 kb on - strand at 686.955 kb on + strand at 686.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 684,540 - IAI47_03285 0.33 +2.4 684,540 - IAI47_03285 0.33 +2.6 684,556 + IAI47_03285 0.34 -0.3 684,556 + IAI47_03285 0.34 -0.3 684,556 + IAI47_03285 0.34 -1.5 684,556 + IAI47_03285 0.34 +1.4 684,557 - IAI47_03285 0.34 +0.0 684,557 - IAI47_03285 0.34 -0.3 684,557 - IAI47_03285 0.34 +3.1 684,644 + IAI47_03285 0.40 -0.2 684,644 + IAI47_03285 0.40 +4.0 684,645 - IAI47_03285 0.40 +0.4 684,652 - IAI47_03285 0.41 -0.7 684,672 - IAI47_03285 0.42 +0.8 684,837 + IAI47_03285 0.54 +3.1 684,837 + IAI47_03285 0.54 -0.2 684,838 - IAI47_03285 0.54 +1.1 684,838 - IAI47_03285 0.54 -0.1 684,851 - IAI47_03285 0.55 +0.0 684,851 - IAI47_03285 0.55 +0.2 684,870 + IAI47_03285 0.56 -0.4 684,870 + IAI47_03285 0.56 -1.1 684,871 - IAI47_03285 0.57 +1.2 684,871 - IAI47_03285 0.57 +2.8 684,911 + IAI47_03285 0.59 +1.3 684,911 + IAI47_03285 0.59 +6.0 684,912 - IAI47_03285 0.59 -0.6 684,912 - IAI47_03285 0.59 +0.7 684,912 - IAI47_03285 0.59 +1.3 684,912 - IAI47_03285 0.59 -0.8 684,912 - IAI47_03285 0.59 +0.2 684,952 + IAI47_03285 0.62 +2.6 685,094 - IAI47_03285 0.72 -0.5 685,094 - IAI47_03285 0.72 +1.7 685,159 + IAI47_03285 0.77 -0.4 685,159 + IAI47_03285 0.77 +1.1 685,159 + IAI47_03285 0.77 +1.2 685,160 - IAI47_03285 0.77 -1.3 685,160 - IAI47_03285 0.77 -1.3 685,221 + IAI47_03285 0.81 +0.1 685,291 + IAI47_03285 0.86 +0.2 685,291 + IAI47_03285 0.86 +0.7 685,291 + IAI47_03285 0.86 +2.0 685,292 - IAI47_03285 0.87 +0.7 685,292 - IAI47_03285 0.87 -0.6 685,292 - IAI47_03285 0.87 +1.4 685,292 - IAI47_03285 0.87 -1.0 685,292 - IAI47_03285 0.87 +0.7 685,292 - IAI47_03285 0.87 +1.5 685,294 + IAI47_03285 0.87 -0.4 685,294 + IAI47_03285 0.87 +1.1 685,294 + IAI47_03285 0.87 -0.3 685,294 + IAI47_03285 0.87 -0.2 685,294 + IAI47_03285 0.87 +0.7 685,294 + IAI47_03285 0.87 -0.2 685,294 + IAI47_03285 0.87 +0.6 685,294 + IAI47_03285 0.87 -0.5 685,295 - IAI47_03285 0.87 -0.7 685,295 - IAI47_03285 0.87 +0.5 685,295 - IAI47_03285 0.87 +0.2 685,295 - IAI47_03285 0.87 +0.7 685,295 - IAI47_03285 0.87 +1.2 685,295 - IAI47_03285 0.87 -1.0 685,297 + IAI47_03285 0.87 +0.7 685,297 + IAI47_03285 0.87 -0.1 685,297 + IAI47_03285 0.87 +0.2 685,297 + IAI47_03285 0.87 -0.4 685,297 + IAI47_03285 0.87 -1.1 685,297 + IAI47_03285 0.87 +3.9 685,298 - IAI47_03285 0.87 +1.9 685,298 - IAI47_03285 0.87 -2.0 685,311 - IAI47_03285 0.88 +0.3 685,357 - +1.9 685,357 - -0.1 685,357 - +0.3 685,399 + -0.3 685,437 + -0.2 685,438 - -0.4 685,438 - -0.1 685,479 - +1.6 685,479 - +0.8 685,514 + -0.2 685,514 + +0.7 685,514 + +0.1 685,514 + -0.2 685,515 - +0.7 685,515 - +2.0 685,515 - +1.0 685,515 - +0.9 685,517 + +0.2 685,517 + -1.7 685,517 + +0.7 685,518 - +1.2 685,518 - +0.4 685,518 - +0.9 685,518 - +1.5 685,518 - -1.7 685,518 - -0.3 685,518 - +2.7 685,518 - -0.1 685,518 - +1.7 685,526 + IAI47_03290 0.10 +2.2 685,526 + IAI47_03290 0.10 +0.4 685,526 + IAI47_03290 0.10 -1.5 685,526 + IAI47_03290 0.10 -0.4 685,526 + IAI47_03290 0.10 -0.8 685,526 + IAI47_03290 0.10 +1.6 685,526 + IAI47_03290 0.10 -1.0 685,526 + IAI47_03290 0.10 -0.6 685,526 + IAI47_03290 0.10 +1.4 685,526 + IAI47_03290 0.10 -0.4 685,526 + IAI47_03290 0.10 -0.9 685,527 - IAI47_03290 0.10 +1.8 685,527 - IAI47_03290 0.10 +2.1 685,527 - IAI47_03290 0.10 +1.6 685,527 - IAI47_03290 0.10 +0.7 685,527 - IAI47_03290 0.10 +1.3 685,527 - IAI47_03290 0.10 +1.6 685,527 - IAI47_03290 0.10 -1.2 685,527 - IAI47_03290 0.10 -2.1 685,527 - IAI47_03290 0.10 +0.7 685,527 - IAI47_03290 0.10 +1.2 685,527 - IAI47_03290 0.10 +1.2 685,527 - IAI47_03290 0.10 -0.8 685,617 + IAI47_03290 0.29 +1.5 685,618 - IAI47_03290 0.29 -1.1 685,618 - IAI47_03290 0.29 +1.5 685,643 + IAI47_03290 0.34 +1.5 685,643 + IAI47_03290 0.34 -2.5 685,643 + IAI47_03290 0.34 +0.0 685,643 + IAI47_03290 0.34 -0.7 685,643 + IAI47_03290 0.34 +0.7 685,644 - IAI47_03290 0.35 +1.3 685,644 - IAI47_03290 0.35 +0.6 685,647 - IAI47_03290 0.35 -1.1 685,661 + IAI47_03290 0.38 +0.2 685,661 + IAI47_03290 0.38 -0.1 685,689 + IAI47_03290 0.44 +0.5 685,689 + IAI47_03290 0.44 +2.1 685,689 + IAI47_03290 0.44 +0.4 685,689 + IAI47_03290 0.44 -0.8 685,690 - IAI47_03290 0.44 +1.4 685,690 - IAI47_03290 0.44 +0.9 685,703 + IAI47_03290 0.47 +3.5 685,823 + IAI47_03290 0.72 +0.1 685,823 + IAI47_03290 0.72 +0.7 685,824 - IAI47_03290 0.72 +0.6 685,832 + IAI47_03290 0.73 +1.6 685,832 + IAI47_03290 0.73 +0.2 685,832 + IAI47_03290 0.73 +0.0 685,832 + IAI47_03290 0.73 -1.3 685,832 + IAI47_03290 0.73 +1.7 685,832 + IAI47_03290 0.73 +1.4 685,832 + IAI47_03290 0.73 -0.6 685,832 + IAI47_03290 0.73 +0.6 685,833 - IAI47_03290 0.74 +0.9 685,833 - IAI47_03290 0.74 -0.3 685,833 - IAI47_03290 0.74 +0.4 685,833 - IAI47_03290 0.74 +1.0 685,833 - IAI47_03290 0.74 +1.7 685,833 - IAI47_03290 0.74 +3.7 685,833 - IAI47_03290 0.74 +1.2 685,833 - IAI47_03290 0.74 +2.9 685,833 - IAI47_03290 0.74 +1.3 685,833 - IAI47_03290 0.74 +3.3 685,833 - IAI47_03290 0.74 +0.0 685,915 - -0.2 685,915 - +1.7 685,920 + +0.2 685,947 + +1.4 685,947 + +0.4 685,947 + +1.2 685,950 + +0.3 685,950 + +0.9 685,951 - -1.4 685,951 - -0.8 685,951 - +0.8 685,951 - +0.3 685,964 + +2.7 685,982 + -0.8 685,982 + -0.4 685,983 - +2.8 685,983 - +0.3 685,983 - +0.4 685,983 - +0.9 685,983 - +0.2 685,983 - -0.7 685,983 - +0.7 685,983 - +2.1 685,983 - +1.3 685,986 + +0.3 685,987 - 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Or see this region's nucleotide sequence