Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02710 and IAI47_02715 are separated by 491 nucleotides IAI47_02715 and IAI47_02720 overlap by 4 nucleotides
IAI47_02710: IAI47_02710 - HlyC/CorC family transporter, at 559,244 to 560,566
_02710
IAI47_02715: IAI47_02715 - outer membrane protein assembly factor, at 561,058 to 562,797
_02715
IAI47_02720: IAI47_02720 - translocation/assembly module TamB, at 562,794 to 566,561
_02720
Position (kb) 561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 560.077 kb on + strand, within IAI47_02710 at 560.078 kb on - strand, within IAI47_02710 at 560.078 kb on - strand, within IAI47_02710 at 560.114 kb on + strand, within IAI47_02710 at 560.114 kb on + strand, within IAI47_02710 at 560.114 kb on + strand, within IAI47_02710 at 560.114 kb on + strand, within IAI47_02710 at 560.115 kb on - strand, within IAI47_02710 at 560.115 kb on - strand, within IAI47_02710 at 560.132 kb on + strand, within IAI47_02710 at 560.132 kb on + strand, within IAI47_02710 at 560.132 kb on + strand, within IAI47_02710 at 560.133 kb on - strand, within IAI47_02710 at 560.133 kb on - strand, within IAI47_02710 at 560.211 kb on - strand, within IAI47_02710 at 560.211 kb on - strand, within IAI47_02710 at 560.211 kb on - strand, within IAI47_02710 at 560.228 kb on - strand, within IAI47_02710 at 560.260 kb on + strand, within IAI47_02710 at 560.260 kb on + strand, within IAI47_02710 at 560.260 kb on + strand, within IAI47_02710 at 560.260 kb on + strand, within IAI47_02710 at 560.260 kb on + strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.261 kb on - strand, within IAI47_02710 at 560.303 kb on - strand, within IAI47_02710 at 560.347 kb on + strand, within IAI47_02710 at 560.348 kb on - strand, within IAI47_02710 at 560.348 kb on - strand, within IAI47_02710 at 560.371 kb on + strand, within IAI47_02710 at 560.479 kb on + strand at 560.528 kb on + strand at 560.528 kb on + strand at 560.529 kb on - strand at 560.541 kb on - strand at 560.541 kb on - strand at 560.557 kb on + strand at 560.557 kb on + strand at 560.557 kb on + strand at 560.557 kb on + strand at 560.557 kb on + strand at 560.558 kb on - strand at 560.558 kb on - strand at 560.558 kb on - strand at 560.558 kb on - strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.567 kb on - strand at 560.567 kb on - strand at 560.567 kb on - strand at 560.567 kb on - strand at 560.567 kb on - strand at 560.618 kb on + strand at 560.618 kb on + strand at 560.640 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.657 kb on - strand at 560.657 kb on - strand at 560.657 kb on - strand at 560.657 kb on - strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.693 kb on + strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.694 kb on - strand at 560.743 kb on + strand at 560.743 kb on + strand at 560.743 kb on + strand at 560.743 kb on + strand at 560.744 kb on - strand at 560.744 kb on - strand at 560.744 kb on - strand at 560.744 kb on - strand at 560.745 kb on + strand at 560.745 kb on + strand at 560.746 kb on - strand at 560.746 kb on - strand at 560.799 kb on + strand at 560.800 kb on - strand at 560.800 kb on - strand at 560.800 kb on - strand at 560.814 kb on + strand at 560.814 kb on + strand at 560.833 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.881 kb on + strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.882 kb on - strand at 560.906 kb on + strand at 560.915 kb on + strand at 560.924 kb on + strand at 560.924 kb on + strand at 560.924 kb on + strand at 560.925 kb on - strand at 560.954 kb on + strand at 560.965 kb on + strand at 560.965 kb on + strand at 560.990 kb on + strand at 560.991 kb on - strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.012 kb on + strand at 561.012 kb on + strand at 561.012 kb on + strand at 561.012 kb on + strand at 561.012 kb on + strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.013 kb on - strand at 561.044 kb on + strand at 561.045 kb on - strand at 561.045 kb on - strand at 561.045 kb on - strand at 561.045 kb on - strand at 561.053 kb on + strand at 561.053 kb on + strand at 561.053 kb on + strand at 561.053 kb on + strand at 561.054 kb on - strand at 561.054 kb on - strand at 561.070 kb on + strand at 561.070 kb on + strand at 561.076 kb on + strand at 561.077 kb on - strand at 561.077 kb on - strand at 561.077 kb on - strand at 561.077 kb on - strand at 561.077 kb on - strand at 561.077 kb on - strand at 561.084 kb on - strand at 561.084 kb on - strand at 561.084 kb on - strand at 561.084 kb on - strand at 561.084 kb on - strand at 561.140 kb on + strand at 561.140 kb on + strand at 561.140 kb on + strand at 561.141 kb on - strand at 561.141 kb on - strand at 561.141 kb on - strand at 561.141 kb on - strand at 561.149 kb on + strand at 561.277 kb on + strand, within IAI47_02715 at 561.277 kb on + strand, within IAI47_02715 at 561.278 kb on - strand, within IAI47_02715 at 561.278 kb on - strand, within IAI47_02715 at 561.278 kb on - strand, within IAI47_02715 at 561.280 kb on + strand, within IAI47_02715 at 561.281 kb on - strand, within IAI47_02715 at 561.281 kb on - strand, within IAI47_02715 at 561.281 kb on - strand, within IAI47_02715 at 561.281 kb on - strand, within IAI47_02715 at 561.339 kb on - strand, within IAI47_02715 at 561.339 kb on - strand, within IAI47_02715 at 561.341 kb on + strand, within IAI47_02715 at 561.341 kb on + strand, within IAI47_02715 at 561.341 kb on + strand, within IAI47_02715 at 561.341 kb on + strand, within IAI47_02715 at 561.341 kb on + strand, within IAI47_02715 at 561.427 kb on + strand, within IAI47_02715 at 561.428 kb on - strand, within IAI47_02715 at 561.487 kb on + strand, within IAI47_02715 at 561.488 kb on - strand, within IAI47_02715 at 561.488 kb on - strand, within IAI47_02715 at 561.498 kb on + strand, within IAI47_02715 at 561.513 kb on + strand, within IAI47_02715 at 561.513 kb on + strand, within IAI47_02715 at 561.514 kb on - strand, within IAI47_02715 at 561.528 kb on + strand, within IAI47_02715 at 561.536 kb on - strand, within IAI47_02715 at 561.552 kb on + strand, within IAI47_02715 at 561.553 kb on - strand, within IAI47_02715 at 561.610 kb on + strand, within IAI47_02715 at 561.610 kb on + strand, within IAI47_02715 at 561.610 kb on + strand, within IAI47_02715 at 561.611 kb on - strand, within IAI47_02715 at 561.611 kb on - strand, within IAI47_02715 at 561.628 kb on + strand, within IAI47_02715 at 561.676 kb on + strand, within IAI47_02715 at 561.676 kb on + strand, within IAI47_02715 at 561.676 kb on + strand, within IAI47_02715 at 561.676 kb on + strand, within IAI47_02715 at 561.677 kb on - strand, within IAI47_02715 at 561.699 kb on + strand, within IAI47_02715 at 561.699 kb on + strand, within IAI47_02715 at 561.699 kb on + strand, within IAI47_02715 at 561.700 kb on - strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.712 kb on + strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.713 kb on - strand, within IAI47_02715 at 561.715 kb on + strand, within IAI47_02715 at 561.715 kb on + strand, within IAI47_02715 at 561.715 kb on + strand, within IAI47_02715 at 561.715 kb on + strand, within IAI47_02715 at 561.716 kb on - strand, within IAI47_02715 at 561.716 kb on - strand, within IAI47_02715 at 561.716 kb on - strand, within IAI47_02715 at 561.716 kb on - strand, within IAI47_02715 at 561.772 kb on - strand, within IAI47_02715 at 561.816 kb on + strand, within IAI47_02715 at 561.816 kb on + strand, within IAI47_02715 at 561.816 kb on + strand, within IAI47_02715 at 561.816 kb on + strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.817 kb on - strand, within IAI47_02715 at 561.970 kb on + strand, within IAI47_02715 at 561.970 kb on + strand, within IAI47_02715 at 561.971 kb on - strand, within IAI47_02715 at 561.971 kb on - strand, within IAI47_02715 at 561.971 kb on - strand, within IAI47_02715 at 562.006 kb on + strand, within IAI47_02715 at 562.006 kb on + strand, within IAI47_02715 at 562.006 kb on + strand, within IAI47_02715 at 562.006 kb on + strand, within IAI47_02715 at 562.007 kb on - strand, within IAI47_02715 at 562.007 kb on - strand, within IAI47_02715 at 562.008 kb on + strand, within IAI47_02715 at 562.008 kb on + strand, within IAI47_02715 at 562.009 kb on - strand, within IAI47_02715 at 562.009 kb on - strand, within IAI47_02715 at 562.009 kb on - strand, within IAI47_02715 at 562.009 kb on - strand, within IAI47_02715 at 562.009 kb on - strand, within IAI47_02715 at 562.042 kb on + strand, within IAI47_02715 at 562.042 kb on + strand, within IAI47_02715 at 562.042 kb on + strand, within IAI47_02715 at 562.042 kb on + strand, within IAI47_02715 at 562.043 kb on - strand, within IAI47_02715 at 562.043 kb on - strand, within IAI47_02715 at 562.043 kb on - strand, within IAI47_02715 at 562.043 kb on - strand, within IAI47_02715 at 562.043 kb on - strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.045 kb on + strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.046 kb on - strand, within IAI47_02715 at 562.186 kb on - strand, within IAI47_02715 at 562.206 kb on + strand, within IAI47_02715 at 562.206 kb on + strand, within IAI47_02715 at 562.207 kb on - strand, within IAI47_02715 at 562.207 kb on - strand, within IAI47_02715 at 562.222 kb on + strand, within IAI47_02715 at 562.238 kb on + strand, within IAI47_02715 at 562.238 kb on + strand, within IAI47_02715 at 562.239 kb on - strand, within IAI47_02715 at 562.294 kb on + strand, within IAI47_02715 at 562.314 kb on + strand, within IAI47_02715 at 562.489 kb on - strand, within IAI47_02715 at 562.504 kb on + strand, within IAI47_02715 at 562.505 kb on - strand, within IAI47_02715 at 562.512 kb on + strand, within IAI47_02715 at 562.512 kb on + strand, within IAI47_02715 at 562.513 kb on - strand, within IAI47_02715 at 562.513 kb on - strand, within IAI47_02715 at 562.580 kb on - strand, within IAI47_02715 at 562.580 kb on - strand, within IAI47_02715 at 562.580 kb on - strand, within IAI47_02715 at 562.585 kb on + strand, within IAI47_02715 at 562.585 kb on + strand, within IAI47_02715 at 562.585 kb on + strand, within IAI47_02715 at 562.585 kb on + strand, within IAI47_02715 at 562.585 kb on + strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.586 kb on - strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.587 kb on + strand, within IAI47_02715 at 562.588 kb on - strand, within IAI47_02715 at 562.588 kb on - strand, within IAI47_02715 at 562.588 kb on - strand, within IAI47_02715 at 562.588 kb on - strand, within IAI47_02715 at 562.599 kb on + strand, within IAI47_02715 at 562.599 kb on + strand, within IAI47_02715 at 562.600 kb on - strand, within IAI47_02715 at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.662 kb on + strand at 562.662 kb on + strand at 562.663 kb on - strand at 562.726 kb on - strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.771 kb on + strand at 562.771 kb on + strand at 562.771 kb on + strand at 562.772 kb on - strand at 562.772 kb on - strand at 562.775 kb on + strand at 562.775 kb on + strand at 562.775 kb on + strand at 562.776 kb on - strand at 562.776 kb on - strand at 562.776 kb on - strand at 562.776 kb on - strand at 562.776 kb on - strand at 562.793 kb on + strand at 562.794 kb on - strand at 562.794 kb on - strand at 562.794 kb on - strand at 562.823 kb on + strand at 562.824 kb on - strand at 562.846 kb on + strand at 562.846 kb on + strand at 562.846 kb on + strand at 562.846 kb on + strand at 562.846 kb on + strand at 562.847 kb on - strand at 562.847 kb on - strand at 562.847 kb on - strand at 562.847 kb on - strand at 562.847 kb on - strand at 562.894 kb on + strand at 562.894 kb on + strand at 562.894 kb on + strand at 562.894 kb on + strand at 562.895 kb on - strand at 562.962 kb on - strand at 563.093 kb on + strand at 563.094 kb on - strand at 563.094 kb on - strand at 563.156 kb on + strand at 563.156 kb on + strand at 563.156 kb on + strand at 563.157 kb on - strand at 563.157 kb on - strand at 563.157 kb on - strand at 563.157 kb on - strand at 563.157 kb on - strand at 563.165 kb on + strand at 563.165 kb on + strand at 563.166 kb on - strand at 563.166 kb on - strand at 563.166 kb on - strand at 563.181 kb on + strand, within IAI47_02720 at 563.181 kb on + strand, within IAI47_02720 at 563.182 kb on - strand, within IAI47_02720 at 563.182 kb on - strand, within IAI47_02720 at 563.182 kb on - strand, within IAI47_02720 at 563.486 kb on + strand at 563.539 kb on - strand, within IAI47_02720 at 563.563 kb on + strand, within IAI47_02720 at 563.563 kb on + strand, within IAI47_02720 at 563.563 kb on + strand, within IAI47_02720 at 563.563 kb on + strand, within IAI47_02720 at 563.564 kb on - strand, within IAI47_02720 at 563.564 kb on - strand, within IAI47_02720 at 563.564 kb on - strand, within IAI47_02720 at 563.715 kb on - strand, within IAI47_02720 at 563.741 kb on + strand, within IAI47_02720
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 560,077 + IAI47_02710 0.63 -1.2 560,078 - IAI47_02710 0.63 -0.6 560,078 - IAI47_02710 0.63 +0.1 560,114 + IAI47_02710 0.66 +1.2 560,114 + IAI47_02710 0.66 -1.5 560,114 + IAI47_02710 0.66 -2.2 560,114 + IAI47_02710 0.66 +1.0 560,115 - IAI47_02710 0.66 +0.6 560,115 - IAI47_02710 0.66 +0.5 560,132 + IAI47_02710 0.67 -0.0 560,132 + IAI47_02710 0.67 -3.5 560,132 + IAI47_02710 0.67 -0.4 560,133 - IAI47_02710 0.67 -1.0 560,133 - IAI47_02710 0.67 +0.4 560,211 - IAI47_02710 0.73 +0.3 560,211 - IAI47_02710 0.73 +0.8 560,211 - IAI47_02710 0.73 -1.1 560,228 - IAI47_02710 0.74 -2.1 560,260 + IAI47_02710 0.77 -0.6 560,260 + IAI47_02710 0.77 +2.6 560,260 + IAI47_02710 0.77 -2.8 560,260 + IAI47_02710 0.77 -0.1 560,260 + IAI47_02710 0.77 -0.9 560,261 - IAI47_02710 0.77 +0.2 560,261 - IAI47_02710 0.77 -1.9 560,261 - IAI47_02710 0.77 -0.1 560,261 - IAI47_02710 0.77 -0.3 560,261 - IAI47_02710 0.77 -1.0 560,261 - IAI47_02710 0.77 -0.8 560,303 - IAI47_02710 0.80 -1.4 560,347 + IAI47_02710 0.83 -1.2 560,348 - IAI47_02710 0.83 +1.1 560,348 - IAI47_02710 0.83 +0.4 560,371 + IAI47_02710 0.85 -0.8 560,479 + -0.9 560,528 + -0.0 560,528 + -1.2 560,529 - +0.3 560,541 - -1.0 560,541 - +0.6 560,557 + -2.0 560,557 + -0.2 560,557 + -0.2 560,557 + -1.9 560,557 + -1.1 560,558 - +0.4 560,558 - +0.4 560,558 - +1.5 560,558 - -1.1 560,561 + -1.3 560,561 + -0.1 560,561 + -3.0 560,561 + -2.6 560,561 + -0.1 560,561 + -1.3 560,561 + -0.7 560,561 + -0.6 560,561 + +0.9 560,561 + -1.5 560,562 - +0.2 560,562 - +2.8 560,562 - +0.1 560,562 - -2.7 560,562 - -0.5 560,562 - -0.8 560,562 - +0.6 560,562 - -0.3 560,562 - -0.5 560,566 + -0.2 560,566 + -1.8 560,566 + -0.8 560,566 + -0.8 560,566 + +0.2 560,566 + -0.2 560,566 + +1.0 560,566 + -0.0 560,566 + +0.6 560,566 + -0.2 560,567 - -0.5 560,567 - +1.2 560,567 - -0.7 560,567 - +0.8 560,567 - -0.1 560,618 + +0.1 560,618 + -1.5 560,640 - +0.5 560,656 + -0.6 560,656 + +1.8 560,656 + -1.2 560,656 + -1.0 560,657 - 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Or see this region's nucleotide sequence