Strain Fitness in Pantoea sp. MT58 around IAI47_02570

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02565 and IAI47_02570 overlap by 4 nucleotidesIAI47_02570 and IAI47_02575 overlap by 4 nucleotides IAI47_02565: IAI47_02565 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 529,710 to 531,230 _02565 IAI47_02570: IAI47_02570 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 531,227 to 531,703 _02570 IAI47_02575: IAI47_02575 - N-acetylmuramoyl-L-alanine amidase AmiB, at 531,700 to 533,370 _02575 Position (kb) 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 530.264 kb on + strand, within IAI47_02565at 530.264 kb on + strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.265 kb on - strand, within IAI47_02565at 530.276 kb on + strand, within IAI47_02565at 530.276 kb on + strand, within IAI47_02565at 530.277 kb on - strand, within IAI47_02565at 530.277 kb on - strand, within IAI47_02565at 530.277 kb on - strand, within IAI47_02565at 530.277 kb on - strand, within IAI47_02565at 530.285 kb on + strand, within IAI47_02565at 530.285 kb on + strand, within IAI47_02565at 530.285 kb on + strand, within IAI47_02565at 530.286 kb on - strand, within IAI47_02565at 530.333 kb on + strand, within IAI47_02565at 530.333 kb on + strand, within IAI47_02565at 530.334 kb on - strand, within IAI47_02565at 530.349 kb on + strand, within IAI47_02565at 530.350 kb on - strand, within IAI47_02565at 530.350 kb on - strand, within IAI47_02565at 530.350 kb on - strand, within IAI47_02565at 530.407 kb on - strand, within IAI47_02565at 530.407 kb on - strand, within IAI47_02565at 530.444 kb on + strand, within IAI47_02565at 530.518 kb on + strand, within IAI47_02565at 530.574 kb on - strand, within IAI47_02565at 530.574 kb on - strand, within IAI47_02565at 530.586 kb on - strand, within IAI47_02565at 530.588 kb on + strand, within IAI47_02565at 530.588 kb on + strand, within IAI47_02565at 530.588 kb on + strand, within IAI47_02565at 530.589 kb on - strand, within IAI47_02565at 530.589 kb on - strand, within IAI47_02565at 530.589 kb on - strand, within IAI47_02565at 530.621 kb on + strand, within IAI47_02565at 530.621 kb on + strand, within IAI47_02565at 530.622 kb on - strand, within IAI47_02565at 530.622 kb on - strand, within IAI47_02565at 530.622 kb on - strand, within IAI47_02565at 530.622 kb on - strand, within IAI47_02565at 530.678 kb on + strand, within IAI47_02565at 530.679 kb on - strand, within IAI47_02565at 530.745 kb on - strand, within IAI47_02565at 530.780 kb on + strand, within IAI47_02565at 530.780 kb on + strand, within IAI47_02565at 530.781 kb on - strand, within IAI47_02565at 530.822 kb on + strand, within IAI47_02565at 530.822 kb on + strand, within IAI47_02565at 530.822 kb on + strand, within IAI47_02565at 530.822 kb on + strand, within IAI47_02565at 530.823 kb on - strand, within IAI47_02565at 530.823 kb on - strand, within IAI47_02565at 530.823 kb on - strand, within IAI47_02565at 530.823 kb on - strand, within IAI47_02565at 530.825 kb on + strand, within IAI47_02565at 530.825 kb on + strand, within IAI47_02565at 530.826 kb on - strand, within IAI47_02565at 530.826 kb on - strand, within IAI47_02565at 530.826 kb on - strand, within IAI47_02565at 530.854 kb on + strand, within IAI47_02565at 530.855 kb on - strand, within IAI47_02565at 530.893 kb on + strand, within IAI47_02565at 530.893 kb on + strand, within IAI47_02565at 530.893 kb on + strand, within IAI47_02565at 530.893 kb on + strand, within IAI47_02565at 530.894 kb on - strand, within IAI47_02565at 530.894 kb on - strand, within IAI47_02565at 530.894 kb on - strand, within IAI47_02565at 530.894 kb on - strand, within IAI47_02565at 530.921 kb on + strand, within IAI47_02565at 530.922 kb on + strand, within IAI47_02565at 530.922 kb on + strand, within IAI47_02565at 530.923 kb on - strand, within IAI47_02565at 530.923 kb on - strand, within IAI47_02565at 530.923 kb on - strand, within IAI47_02565at 530.932 kb on + strand, within IAI47_02565at 531.026 kb on + strand, within IAI47_02565at 531.026 kb on + strand, within IAI47_02565at 531.026 kb on + strand, within IAI47_02565at 531.027 kb on - strand, within IAI47_02565at 531.027 kb on - strand, within IAI47_02565at 531.027 kb on - strand, within IAI47_02565at 531.050 kb on + strand, within IAI47_02565at 531.050 kb on + strand, within IAI47_02565at 531.050 kb on + strand, within IAI47_02565at 531.161 kb on + strandat 531.161 kb on + strandat 531.178 kb on + strandat 531.178 kb on + strandat 531.179 kb on - strandat 531.218 kb on + strandat 531.218 kb on + strandat 531.218 kb on + strandat 531.218 kb on + strandat 531.218 kb on + strandat 531.694 kb on + strandat 531.694 kb on + strandat 531.728 kb on + strandat 532.057 kb on + strand, within IAI47_02575

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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530,264 + IAI47_02565 0.36 -1.9
530,264 + IAI47_02565 0.36 +2.3
530,265 - IAI47_02565 0.36 -0.6
530,265 - IAI47_02565 0.36 +0.6
530,265 - IAI47_02565 0.36 +0.1
530,265 - IAI47_02565 0.36 -2.8
530,265 - IAI47_02565 0.36 -0.4
530,265 - IAI47_02565 0.36 +1.5
530,265 - IAI47_02565 0.36 +0.4
530,265 - IAI47_02565 0.36 -0.2
530,276 + IAI47_02565 0.37 +0.2
530,276 + IAI47_02565 0.37 -0.1
530,277 - IAI47_02565 0.37 +1.8
530,277 - IAI47_02565 0.37 -2.0
530,277 - IAI47_02565 0.37 -0.6
530,277 - IAI47_02565 0.37 -0.8
530,285 + IAI47_02565 0.38 +1.0
530,285 + IAI47_02565 0.38 +1.6
530,285 + IAI47_02565 0.38 -0.8
530,286 - IAI47_02565 0.38 +1.7
530,333 + IAI47_02565 0.41 -1.0
530,333 + IAI47_02565 0.41 +1.4
530,334 - IAI47_02565 0.41 -0.0
530,349 + IAI47_02565 0.42 -0.4
530,350 - IAI47_02565 0.42 -0.8
530,350 - IAI47_02565 0.42 -2.2
530,350 - IAI47_02565 0.42 -3.0
530,407 - IAI47_02565 0.46 +1.7
530,407 - IAI47_02565 0.46 -0.3
530,444 + IAI47_02565 0.48 +0.9
530,518 + IAI47_02565 0.53 +0.2
530,574 - IAI47_02565 0.57 +0.8
530,574 - IAI47_02565 0.57 +0.6
530,586 - IAI47_02565 0.58 -0.8
530,588 + IAI47_02565 0.58 +1.0
530,588 + IAI47_02565 0.58 -1.7
530,588 + IAI47_02565 0.58 -0.2
530,589 - IAI47_02565 0.58 -0.5
530,589 - IAI47_02565 0.58 -1.5
530,589 - IAI47_02565 0.58 -0.6
530,621 + IAI47_02565 0.60 +0.1
530,621 + IAI47_02565 0.60 +1.5
530,622 - IAI47_02565 0.60 -1.0
530,622 - IAI47_02565 0.60 +2.5
530,622 - IAI47_02565 0.60 +1.0
530,622 - IAI47_02565 0.60 +0.4
530,678 + IAI47_02565 0.64 +0.0
530,679 - IAI47_02565 0.64 -0.4
530,745 - IAI47_02565 0.68 -0.4
530,780 + IAI47_02565 0.70 +2.8
530,780 + IAI47_02565 0.70 -0.1
530,781 - IAI47_02565 0.70 -0.5
530,822 + IAI47_02565 0.73 +1.3
530,822 + IAI47_02565 0.73 -0.7
530,822 + IAI47_02565 0.73 +2.6
530,822 + IAI47_02565 0.73 -1.0
530,823 - IAI47_02565 0.73 -1.0
530,823 - IAI47_02565 0.73 -1.5
530,823 - IAI47_02565 0.73 -0.7
530,823 - IAI47_02565 0.73 -0.0
530,825 + IAI47_02565 0.73 -0.4
530,825 + IAI47_02565 0.73 +0.8
530,826 - IAI47_02565 0.73 -0.5
530,826 - IAI47_02565 0.73 -2.3
530,826 - IAI47_02565 0.73 -1.8
530,854 + IAI47_02565 0.75 -1.6
530,855 - IAI47_02565 0.75 -2.0
530,893 + IAI47_02565 0.78 -0.5
530,893 + IAI47_02565 0.78 +1.1
530,893 + IAI47_02565 0.78 +0.3
530,893 + IAI47_02565 0.78 -2.0
530,894 - IAI47_02565 0.78 +0.1
530,894 - IAI47_02565 0.78 +0.6
530,894 - IAI47_02565 0.78 -2.6
530,894 - IAI47_02565 0.78 -1.3
530,921 + IAI47_02565 0.80 +3.9
530,922 + IAI47_02565 0.80 +1.5
530,922 + IAI47_02565 0.80 +0.2
530,923 - IAI47_02565 0.80 -1.7
530,923 - IAI47_02565 0.80 -0.9
530,923 - IAI47_02565 0.80 -1.3
530,932 + IAI47_02565 0.80 -0.8
531,026 + IAI47_02565 0.87 -1.0
531,026 + IAI47_02565 0.87 -1.3
531,026 + IAI47_02565 0.87 +0.4
531,027 - IAI47_02565 0.87 +0.2
531,027 - IAI47_02565 0.87 -0.1
531,027 - IAI47_02565 0.87 +2.0
531,050 + IAI47_02565 0.88 +0.2
531,050 + IAI47_02565 0.88 -0.5
531,050 + IAI47_02565 0.88 +1.5
531,161 + +1.8
531,161 + -0.0
531,178 + +0.7
531,178 + +0.5
531,179 - -0.9
531,218 + -1.4
531,218 + +1.0
531,218 + -2.1
531,218 + -2.2
531,218 + +0.1
531,694 + +0.5
531,694 + -1.4
531,728 + -0.8
532,057 + IAI47_02575 0.21 -1.3

Or see this region's nucleotide sequence