Strain Fitness in Pantoea sp. MT58 around IAI47_19820

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19815 and IAI47_19820 are separated by 685 nucleotidesIAI47_19820 and IAI47_19825 are separated by 83 nucleotides IAI47_19815: IAI47_19815 - hypothetical protein, at 189,118 to 189,465 _19815 IAI47_19820: IAI47_19820 - MCP four helix bundle domain-containing protein, at 190,151 to 191,770 _19820 IAI47_19825: IAI47_19825 - EAL domain-containing protein, at 191,854 to 193,465 _19825 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 189.162 kb on + strand, within IAI47_19815at 189.162 kb on + strand, within IAI47_19815at 189.163 kb on - strand, within IAI47_19815at 189.163 kb on - strand, within IAI47_19815at 189.164 kb on + strand, within IAI47_19815at 189.164 kb on + strand, within IAI47_19815at 189.165 kb on - strand, within IAI47_19815at 189.165 kb on - strand, within IAI47_19815at 189.174 kb on + strand, within IAI47_19815at 189.235 kb on - strand, within IAI47_19815at 189.289 kb on + strand, within IAI47_19815at 189.289 kb on + strand, within IAI47_19815at 189.290 kb on - strand, within IAI47_19815at 189.290 kb on - strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.324 kb on + strand, within IAI47_19815at 189.325 kb on - strand, within IAI47_19815at 189.361 kb on - strand, within IAI47_19815at 189.397 kb on - strand, within IAI47_19815at 189.416 kb on + strand, within IAI47_19815at 189.416 kb on + strand, within IAI47_19815at 189.417 kb on - strand, within IAI47_19815at 189.417 kb on - strand, within IAI47_19815at 189.443 kb on + strandat 189.443 kb on + strandat 189.443 kb on + strandat 189.443 kb on + strandat 189.444 kb on - strandat 189.444 kb on - strandat 189.459 kb on + strandat 189.459 kb on + strandat 189.460 kb on - strandat 189.460 kb on - strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.466 kb on - strandat 189.466 kb on - strandat 189.466 kb on - strandat 189.490 kb on + strandat 189.490 kb on + strandat 189.491 kb on - strandat 189.493 kb on + strandat 189.493 kb on + strandat 189.493 kb on + strandat 189.494 kb on - strandat 189.553 kb on + strandat 189.589 kb on + strandat 189.593 kb on + strandat 189.594 kb on - strandat 189.596 kb on + strandat 189.596 kb on + strandat 189.596 kb on + strandat 189.597 kb on - strandat 189.614 kb on + strandat 189.615 kb on - strandat 189.615 kb on - strandat 189.617 kb on + strandat 189.629 kb on + strandat 189.664 kb on - strandat 189.664 kb on - strandat 189.689 kb on + strandat 189.689 kb on + strandat 189.689 kb on + strandat 189.690 kb on - strandat 189.710 kb on + strandat 189.711 kb on - strandat 189.714 kb on + strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.723 kb on - strandat 189.723 kb on - strandat 189.723 kb on - strandat 189.727 kb on - strandat 189.757 kb on + strandat 189.776 kb on + strandat 189.776 kb on + strandat 189.777 kb on - strandat 189.777 kb on - strandat 189.782 kb on + strandat 189.789 kb on + strandat 189.800 kb on + strandat 189.800 kb on + strandat 189.801 kb on - strandat 189.801 kb on - strandat 189.830 kb on + strandat 189.830 kb on + strandat 189.830 kb on + strandat 189.839 kb on - strandat 189.886 kb on + strandat 189.887 kb on - strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.934 kb on - strandat 189.934 kb on - strandat 189.934 kb on - strandat 189.964 kb on + strandat 189.965 kb on - strandat 189.980 kb on + strandat 189.981 kb on - strandat 189.998 kb on + strandat 189.998 kb on + strandat 189.998 kb on + strandat 189.999 kb on - strandat 189.999 kb on - strandat 189.999 kb on - strandat 190.048 kb on + strandat 190.099 kb on - strandat 190.123 kb on + strandat 190.140 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.169 kb on + strandat 190.169 kb on + strandat 190.170 kb on - strandat 190.299 kb on - strandat 190.299 kb on - strandat 190.340 kb on - strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.351 kb on + strand, within IAI47_19820at 190.351 kb on + strand, within IAI47_19820at 190.352 kb on - strand, within IAI47_19820at 190.352 kb on - strand, within IAI47_19820at 190.364 kb on - strand, within IAI47_19820at 190.578 kb on - strand, within IAI47_19820at 190.642 kb on + strand, within IAI47_19820at 190.643 kb on - strand, within IAI47_19820at 190.679 kb on + strand, within IAI47_19820at 190.679 kb on + strand, within IAI47_19820at 190.680 kb on - strand, within IAI47_19820at 190.723 kb on + strand, within IAI47_19820at 190.805 kb on - strand, within IAI47_19820at 190.805 kb on - strand, within IAI47_19820at 190.805 kb on - strand, within IAI47_19820at 190.834 kb on + strand, within IAI47_19820at 190.835 kb on - strand, within IAI47_19820at 190.866 kb on - strand, within IAI47_19820at 190.899 kb on - strand, within IAI47_19820at 190.904 kb on - strand, within IAI47_19820at 190.904 kb on - strand, within IAI47_19820at 190.920 kb on - strand, within IAI47_19820at 190.942 kb on + strand, within IAI47_19820at 190.943 kb on - strand, within IAI47_19820at 190.943 kb on - strand, within IAI47_19820at 190.961 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.988 kb on - strand, within IAI47_19820at 191.050 kb on + strand, within IAI47_19820at 191.051 kb on - strand, within IAI47_19820at 191.084 kb on + strand, within IAI47_19820at 191.084 kb on + strand, within IAI47_19820at 191.103 kb on + strand, within IAI47_19820at 191.103 kb on + strand, within IAI47_19820at 191.104 kb on - strand, within IAI47_19820at 191.104 kb on - strand, within IAI47_19820at 191.116 kb on + strand, within IAI47_19820at 191.131 kb on + strand, within IAI47_19820at 191.132 kb on - strand, within IAI47_19820at 191.132 kb on - strand, within IAI47_19820at 191.147 kb on - strand, within IAI47_19820at 191.183 kb on - strand, within IAI47_19820at 191.195 kb on + strand, within IAI47_19820at 191.196 kb on - strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.204 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.213 kb on - strand, within IAI47_19820at 191.213 kb on - strand, within IAI47_19820at 191.271 kb on - strand, within IAI47_19820at 191.278 kb on + strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.283 kb on + strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.294 kb on + strand, within IAI47_19820at 191.338 kb on + strand, within IAI47_19820at 191.339 kb on - strand, within IAI47_19820at 191.339 kb on - strand, within IAI47_19820at 191.404 kb on + strand, within IAI47_19820at 191.404 kb on + strand, within IAI47_19820at 191.405 kb on - strand, within IAI47_19820at 191.473 kb on + strand, within IAI47_19820at 191.537 kb on + strand, within IAI47_19820at 191.552 kb on + strand, within IAI47_19820at 191.571 kb on - strand, within IAI47_19820at 191.582 kb on - strand, within IAI47_19820at 191.600 kb on + strand, within IAI47_19820at 191.601 kb on - strand, within IAI47_19820at 191.601 kb on - strand, within IAI47_19820at 191.610 kb on + strandat 191.636 kb on - strandat 191.739 kb on - strandat 191.759 kb on - strandat 191.771 kb on + strandat 191.771 kb on + strandat 191.775 kb on - strandat 191.775 kb on - strandat 191.842 kb on + strandat 191.843 kb on - strandat 191.862 kb on + strandat 191.915 kb on + strandat 191.959 kb on - strandat 191.965 kb on + strandat 191.993 kb on - strandat 192.043 kb on + strand, within IAI47_19825at 192.044 kb on - strand, within IAI47_19825at 192.044 kb on - strand, within IAI47_19825at 192.091 kb on - strand, within IAI47_19825at 192.123 kb on - strand, within IAI47_19825at 192.247 kb on + strand, within IAI47_19825at 192.247 kb on + strand, within IAI47_19825at 192.297 kb on - strand, within IAI47_19825at 192.313 kb on - strand, within IAI47_19825at 192.355 kb on - strand, within IAI47_19825at 192.444 kb on + strand, within IAI47_19825at 192.468 kb on + strand, within IAI47_19825at 192.491 kb on - strand, within IAI47_19825at 192.514 kb on + strand, within IAI47_19825at 192.559 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.569 kb on - strand, within IAI47_19825at 192.569 kb on - strand, within IAI47_19825at 192.603 kb on + strand, within IAI47_19825at 192.627 kb on - strand, within IAI47_19825at 192.701 kb on - strand, within IAI47_19825at 192.701 kb on - strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.705 kb on + strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.715 kb on - strand, within IAI47_19825at 192.743 kb on - strand, within IAI47_19825at 192.743 kb on - strand, within IAI47_19825

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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189,162 + IAI47_19815 0.13 -0.4
189,162 + IAI47_19815 0.13 -0.1
189,163 - IAI47_19815 0.13 +0.5
189,163 - IAI47_19815 0.13 +0.3
189,164 + IAI47_19815 0.13 +1.9
189,164 + IAI47_19815 0.13 +0.9
189,165 - IAI47_19815 0.14 +1.5
189,165 - IAI47_19815 0.14 +1.6
189,174 + IAI47_19815 0.16 +2.6
189,235 - IAI47_19815 0.34 +0.1
189,289 + IAI47_19815 0.49 -0.5
189,289 + IAI47_19815 0.49 -0.6
189,290 - IAI47_19815 0.49 -0.4
189,290 - IAI47_19815 0.49 +0.1
189,319 + IAI47_19815 0.58 +0.1
189,319 + IAI47_19815 0.58 +0.4
189,319 + IAI47_19815 0.58 +1.7
189,319 + IAI47_19815 0.58 +1.3
189,320 - IAI47_19815 0.58 +0.2
189,320 - IAI47_19815 0.58 -0.5
189,320 - IAI47_19815 0.58 +1.1
189,320 - IAI47_19815 0.58 -0.7
189,320 - IAI47_19815 0.58 -0.3
189,320 - IAI47_19815 0.58 -0.3
189,324 + IAI47_19815 0.59 +0.1
189,325 - IAI47_19815 0.59 +1.3
189,361 - IAI47_19815 0.70 +0.9
189,397 - IAI47_19815 0.80 +0.6
189,416 + IAI47_19815 0.86 -0.9
189,416 + IAI47_19815 0.86 +1.5
189,417 - IAI47_19815 0.86 +0.2
189,417 - IAI47_19815 0.86 +0.7
189,443 + +0.1
189,443 + +0.5
189,443 + +2.0
189,443 + +0.0
189,444 - +0.3
189,444 - -1.2
189,459 + -0.5
189,459 + -1.7
189,460 - +0.3
189,460 - -0.6
189,465 + +2.6
189,465 + -0.9
189,465 + -1.1
189,465 + +0.7
189,465 + +1.8
189,466 - +0.1
189,466 - +1.9
189,466 - +0.5
189,490 + -2.2
189,490 + -0.6
189,491 - +1.3
189,493 + -1.7
189,493 + -0.3
189,493 + -0.7
189,494 - -1.2
189,553 + +0.1
189,589 + -1.2
189,593 + -0.3
189,594 - -0.7
189,596 + -0.4
189,596 + -2.4
189,596 + -0.4
189,597 - +1.7
189,614 + -1.2
189,615 - -1.1
189,615 - +0.8
189,617 + +0.4
189,629 + +0.5
189,664 - +1.2
189,664 - -2.1
189,689 + +0.1
189,689 + -0.4
189,689 + +1.7
189,690 - +2.5
189,710 + +0.3
189,711 - -1.1
189,714 + -1.8
189,715 - +0.8
189,715 - +0.3
189,715 - +1.0
189,715 - -0.5
189,715 - -0.6
189,722 + +0.9
189,722 + +2.5
189,722 + +0.3
189,722 + -0.4
189,722 + +0.6
189,722 + +0.1
189,722 + +1.1
189,722 + +0.8
189,723 - -0.2
189,723 - +1.8
189,723 - -1.3
189,727 - +1.0
189,757 + +0.9
189,776 + -0.6
189,776 + -0.7
189,777 - +0.7
189,777 - +1.2
189,782 + -0.7
189,789 + +0.4
189,800 + +3.6
189,800 + -1.1
189,801 - -1.5
189,801 - -0.0
189,830 + +1.1
189,830 + -1.7
189,830 + +0.6
189,839 - +1.1
189,886 + -0.1
189,887 - +1.7
189,933 + +1.6
189,933 + -1.9
189,933 + +0.7
189,933 + -0.8
189,933 + -0.1
189,933 + -0.1
189,934 - -0.7
189,934 - -0.7
189,934 - -1.8
189,964 + +0.3
189,965 - -0.1
189,980 + -0.4
189,981 - +2.9
189,998 + -1.2
189,998 + -0.4
189,998 + -1.6
189,999 - -0.1
189,999 - +1.9
189,999 - -1.0
190,048 + +1.2
190,099 - -0.7
190,123 + -0.7
190,140 - -0.1
190,165 - +0.6
190,165 - +0.4
190,165 - +0.0
190,165 - +1.5
190,169 + +2.1
190,169 + +1.5
190,170 - -0.8
190,299 - -0.6
190,299 - +1.1
190,340 - IAI47_19820 0.12 -1.6
190,348 + IAI47_19820 0.12 +0.3
190,348 + IAI47_19820 0.12 -0.1
190,348 + IAI47_19820 0.12 -0.9
190,351 + IAI47_19820 0.12 -0.6
190,351 + IAI47_19820 0.12 +0.7
190,352 - IAI47_19820 0.12 +0.3
190,352 - IAI47_19820 0.12 -0.3
190,364 - IAI47_19820 0.13 +0.1
190,578 - IAI47_19820 0.26 +1.0
190,642 + IAI47_19820 0.30 +0.7
190,643 - IAI47_19820 0.30 +1.0
190,679 + IAI47_19820 0.33 +0.1
190,679 + IAI47_19820 0.33 +0.9
190,680 - IAI47_19820 0.33 +0.2
190,723 + IAI47_19820 0.35 +0.1
190,805 - IAI47_19820 0.40 +0.8
190,805 - IAI47_19820 0.40 +0.8
190,805 - IAI47_19820 0.40 -0.6
190,834 + IAI47_19820 0.42 +0.7
190,835 - IAI47_19820 0.42 +0.3
190,866 - IAI47_19820 0.44 +0.4
190,899 - IAI47_19820 0.46 -0.1
190,904 - IAI47_19820 0.46 -0.4
190,904 - IAI47_19820 0.46 -1.2
190,920 - IAI47_19820 0.47 +1.3
190,942 + IAI47_19820 0.49 -0.4
190,943 - IAI47_19820 0.49 +1.7
190,943 - IAI47_19820 0.49 +1.7
190,961 + IAI47_19820 0.50 -1.1
190,987 + IAI47_19820 0.52 -1.7
190,987 + IAI47_19820 0.52 -0.6
190,987 + IAI47_19820 0.52 -0.8
190,988 - IAI47_19820 0.52 -0.7
191,050 + IAI47_19820 0.55 +2.1
191,051 - IAI47_19820 0.56 -1.7
191,084 + IAI47_19820 0.58 +0.4
191,084 + IAI47_19820 0.58 +0.0
191,103 + IAI47_19820 0.59 -0.3
191,103 + IAI47_19820 0.59 +0.5
191,104 - IAI47_19820 0.59 -0.6
191,104 - IAI47_19820 0.59 +0.1
191,116 + IAI47_19820 0.60 +0.3
191,131 + IAI47_19820 0.60 +0.8
191,132 - IAI47_19820 0.61 -1.5
191,132 - IAI47_19820 0.61 -0.9
191,147 - IAI47_19820 0.61 +0.1
191,183 - IAI47_19820 0.64 +1.7
191,195 + IAI47_19820 0.64 -0.5
191,196 - IAI47_19820 0.65 +2.2
191,203 + IAI47_19820 0.65 +2.1
191,203 + IAI47_19820 0.65 +0.9
191,203 + IAI47_19820 0.65 -2.4
191,203 + IAI47_19820 0.65 -0.4
191,204 - IAI47_19820 0.65 -1.0
191,206 - IAI47_19820 0.65 +1.7
191,206 - IAI47_19820 0.65 +0.4
191,206 - IAI47_19820 0.65 -1.7
191,213 - IAI47_19820 0.66 -0.5
191,213 - IAI47_19820 0.66 -1.1
191,271 - IAI47_19820 0.69 -1.4
191,278 + IAI47_19820 0.70 -0.6
191,279 - IAI47_19820 0.70 +0.4
191,279 - IAI47_19820 0.70 -0.1
191,279 - IAI47_19820 0.70 -1.0
191,283 + IAI47_19820 0.70 +0.6
191,284 - IAI47_19820 0.70 +1.6
191,284 - IAI47_19820 0.70 +1.6
191,284 - IAI47_19820 0.70 -1.1
191,294 + IAI47_19820 0.71 -1.2
191,338 + IAI47_19820 0.73 +1.6
191,339 - IAI47_19820 0.73 +0.5
191,339 - IAI47_19820 0.73 +0.1
191,404 + IAI47_19820 0.77 +0.1
191,404 + IAI47_19820 0.77 +0.6
191,405 - IAI47_19820 0.77 +1.1
191,473 + IAI47_19820 0.82 -0.2
191,537 + IAI47_19820 0.86 -1.4
191,552 + IAI47_19820 0.86 -1.9
191,571 - IAI47_19820 0.88 +0.9
191,582 - IAI47_19820 0.88 -0.4
191,600 + IAI47_19820 0.89 -0.3
191,601 - IAI47_19820 0.90 +0.2
191,601 - IAI47_19820 0.90 +0.8
191,610 + -0.2
191,636 - +1.4
191,739 - -0.6
191,759 - +0.1
191,771 + -0.2
191,771 + -0.9
191,775 - -1.1
191,775 - -0.1
191,842 + +0.8
191,843 - +1.4
191,862 + +0.1
191,915 + +0.6
191,959 - +0.6
191,965 + -0.1
191,993 - +0.1
192,043 + IAI47_19825 0.12 +0.4
192,044 - IAI47_19825 0.12 +2.7
192,044 - IAI47_19825 0.12 -0.5
192,091 - IAI47_19825 0.15 -1.2
192,123 - IAI47_19825 0.17 -1.2
192,247 + IAI47_19825 0.24 -1.9
192,247 + IAI47_19825 0.24 -0.7
192,297 - IAI47_19825 0.27 +2.0
192,313 - IAI47_19825 0.28 -0.6
192,355 - IAI47_19825 0.31 +0.4
192,444 + IAI47_19825 0.37 -0.7
192,468 + IAI47_19825 0.38 +0.4
192,491 - IAI47_19825 0.40 +2.8
192,514 + IAI47_19825 0.41 +0.8
192,559 + IAI47_19825 0.44 +1.0
192,568 + IAI47_19825 0.44 +0.7
192,568 + IAI47_19825 0.44 +0.4
192,568 + IAI47_19825 0.44 +0.3
192,569 - IAI47_19825 0.44 -0.1
192,569 - IAI47_19825 0.44 +1.1
192,603 + IAI47_19825 0.46 +0.7
192,627 - IAI47_19825 0.48 +1.9
192,701 - IAI47_19825 0.53 +2.5
192,701 - IAI47_19825 0.53 -0.6
192,702 + IAI47_19825 0.53 +1.5
192,702 + IAI47_19825 0.53 -0.4
192,702 + IAI47_19825 0.53 -0.4
192,702 + IAI47_19825 0.53 +0.1
192,702 + IAI47_19825 0.53 -1.2
192,703 - IAI47_19825 0.53 -0.9
192,703 - IAI47_19825 0.53 +0.0
192,703 - IAI47_19825 0.53 +1.7
192,703 - IAI47_19825 0.53 -0.3
192,705 + IAI47_19825 0.53 +0.0
192,706 - IAI47_19825 0.53 -1.2
192,706 - IAI47_19825 0.53 -0.8
192,706 - IAI47_19825 0.53 -0.3
192,706 - IAI47_19825 0.53 +0.8
192,715 - IAI47_19825 0.53 -2.6
192,743 - IAI47_19825 0.55 +2.7
192,743 - IAI47_19825 0.55 -0.3

Or see this region's nucleotide sequence