Strain Fitness in Pantoea sp. MT58 around IAI47_19255

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19250 and IAI47_19255 are separated by 21 nucleotidesIAI47_19255 and IAI47_19260 are separated by 34 nucleotides IAI47_19250: IAI47_19250 - sugar ABC transporter ATP-binding protein, at 75,822 to 77,330 _19250 IAI47_19255: IAI47_19255 - substrate-binding domain-containing protein, at 77,352 to 78,332 _19255 IAI47_19260: IAI47_19260 - ABC transporter permease, at 78,367 to 79,392 _19260 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 76.372 kb on + strand, within IAI47_19250at 76.379 kb on + strand, within IAI47_19250at 76.380 kb on - strand, within IAI47_19250at 76.380 kb on - strand, within IAI47_19250at 76.392 kb on + strand, within IAI47_19250at 76.393 kb on - strand, within IAI47_19250at 76.393 kb on - strand, within IAI47_19250at 76.515 kb on + strand, within IAI47_19250at 76.516 kb on - strand, within IAI47_19250at 76.535 kb on + strand, within IAI47_19250at 76.535 kb on + strand, within IAI47_19250at 76.535 kb on + strand, within IAI47_19250at 76.535 kb on + strand, within IAI47_19250at 76.536 kb on - strand, within IAI47_19250at 76.536 kb on - strand, within IAI47_19250at 76.536 kb on - strand, within IAI47_19250at 76.539 kb on + strand, within IAI47_19250at 76.539 kb on + strand, within IAI47_19250at 76.539 kb on + strand, within IAI47_19250at 76.540 kb on - strand, within IAI47_19250at 76.544 kb on + strand, within IAI47_19250at 76.545 kb on - strand, within IAI47_19250at 76.604 kb on - strand, within IAI47_19250at 76.626 kb on - strand, within IAI47_19250at 76.626 kb on - strand, within IAI47_19250at 76.662 kb on - strand, within IAI47_19250at 76.672 kb on + strand, within IAI47_19250at 76.672 kb on + strand, within IAI47_19250at 76.673 kb on - strand, within IAI47_19250at 76.731 kb on + strand, within IAI47_19250at 76.732 kb on - strand, within IAI47_19250at 76.732 kb on - strand, within IAI47_19250at 76.874 kb on + strand, within IAI47_19250at 76.874 kb on + strand, within IAI47_19250at 76.875 kb on - strand, within IAI47_19250at 76.875 kb on - strand, within IAI47_19250at 76.951 kb on + strand, within IAI47_19250at 76.952 kb on - strand, within IAI47_19250at 76.952 kb on - strand, within IAI47_19250at 77.097 kb on - strand, within IAI47_19250at 77.190 kb on + strandat 77.204 kb on + strandat 77.205 kb on - strandat 77.210 kb on + strandat 77.210 kb on + strandat 77.210 kb on + strandat 77.210 kb on + strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.211 kb on - strandat 77.301 kb on + strandat 77.307 kb on + strandat 77.308 kb on - strandat 77.323 kb on + strandat 77.323 kb on + strandat 77.323 kb on + strandat 77.324 kb on - strandat 77.324 kb on - strandat 77.357 kb on - strandat 77.384 kb on + strandat 77.384 kb on + strandat 77.384 kb on + strandat 77.385 kb on - strandat 77.537 kb on + strand, within IAI47_19255at 77.538 kb on - strand, within IAI47_19255at 77.563 kb on + strand, within IAI47_19255at 77.564 kb on - strand, within IAI47_19255at 77.564 kb on - strand, within IAI47_19255at 77.564 kb on - strand, within IAI47_19255at 77.564 kb on - strand, within IAI47_19255at 77.564 kb on - strand, within IAI47_19255at 77.579 kb on + strand, within IAI47_19255at 77.580 kb on - strand, within IAI47_19255at 77.580 kb on - strand, within IAI47_19255at 77.600 kb on + strand, within IAI47_19255at 77.600 kb on + strand, within IAI47_19255at 77.600 kb on + strand, within IAI47_19255at 77.633 kb on + strand, within IAI47_19255at 77.633 kb on + strand, within IAI47_19255at 77.634 kb on - strand, within IAI47_19255at 77.641 kb on + strand, within IAI47_19255at 77.642 kb on - strand, within IAI47_19255at 77.690 kb on + strand, within IAI47_19255at 77.691 kb on - strand, within IAI47_19255at 77.738 kb on + strand, within IAI47_19255at 77.739 kb on - strand, within IAI47_19255at 77.804 kb on + strand, within IAI47_19255at 77.804 kb on + strand, within IAI47_19255at 77.804 kb on + strand, within IAI47_19255at 77.805 kb on - strand, within IAI47_19255at 77.805 kb on - strand, within IAI47_19255at 77.805 kb on - strand, within IAI47_19255at 77.805 kb on - strand, within IAI47_19255at 77.805 kb on - strand, within IAI47_19255at 77.819 kb on + strand, within IAI47_19255at 77.820 kb on - strand, within IAI47_19255at 77.850 kb on - strand, within IAI47_19255at 77.871 kb on + strand, within IAI47_19255at 77.871 kb on + strand, within IAI47_19255at 77.872 kb on - strand, within IAI47_19255at 77.872 kb on - strand, within IAI47_19255at 77.960 kb on + strand, within IAI47_19255at 77.960 kb on + strand, within IAI47_19255at 77.960 kb on + strand, within IAI47_19255at 77.980 kb on - strand, within IAI47_19255at 77.993 kb on + strand, within IAI47_19255at 77.993 kb on + strand, within IAI47_19255at 77.994 kb on - strand, within IAI47_19255at 78.127 kb on - strand, within IAI47_19255at 78.134 kb on + strand, within IAI47_19255at 78.134 kb on + strand, within IAI47_19255at 78.134 kb on + strand, within IAI47_19255at 78.135 kb on - strand, within IAI47_19255at 78.135 kb on - strand, within IAI47_19255at 78.135 kb on - strand, within IAI47_19255at 78.135 kb on - strand, within IAI47_19255at 78.135 kb on - strand, within IAI47_19255at 78.181 kb on + strand, within IAI47_19255at 78.181 kb on + strand, within IAI47_19255at 78.181 kb on + strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.182 kb on - strand, within IAI47_19255at 78.184 kb on + strand, within IAI47_19255at 78.184 kb on + strand, within IAI47_19255at 78.194 kb on + strand, within IAI47_19255at 78.194 kb on + strand, within IAI47_19255at 78.194 kb on + strand, within IAI47_19255at 78.195 kb on - strand, within IAI47_19255at 78.200 kb on + strand, within IAI47_19255at 78.200 kb on + strand, within IAI47_19255at 78.200 kb on + strand, within IAI47_19255at 78.313 kb on - strandat 78.354 kb on - strandat 78.354 kb on - strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.368 kb on + strandat 78.369 kb on - strandat 78.369 kb on - strandat 78.369 kb on - strandat 78.369 kb on - strandat 78.400 kb on + strandat 78.411 kb on + strandat 78.412 kb on - strandat 78.447 kb on + strandat 78.492 kb on - strand, within IAI47_19260at 78.492 kb on - strand, within IAI47_19260at 78.567 kb on + strand, within IAI47_19260at 78.567 kb on + strand, within IAI47_19260at 78.567 kb on + strand, within IAI47_19260at 78.680 kb on + strand, within IAI47_19260at 78.680 kb on + strand, within IAI47_19260at 78.680 kb on + strand, within IAI47_19260at 78.681 kb on - strand, within IAI47_19260at 78.681 kb on - strand, within IAI47_19260at 78.681 kb on - strand, within IAI47_19260at 78.681 kb on - strand, within IAI47_19260at 78.681 kb on - strand, within IAI47_19260at 78.682 kb on + strand, within IAI47_19260at 78.682 kb on + strand, within IAI47_19260at 78.723 kb on - strand, within IAI47_19260at 78.723 kb on - strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.794 kb on + strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.795 kb on - strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.798 kb on + strand, within IAI47_19260at 78.799 kb on - strand, within IAI47_19260at 78.799 kb on - strand, within IAI47_19260at 78.799 kb on - strand, within IAI47_19260at 78.799 kb on - strand, within IAI47_19260at 78.878 kb on - strand, within IAI47_19260at 78.904 kb on - strand, within IAI47_19260at 78.933 kb on + strand, within IAI47_19260at 78.949 kb on - strand, within IAI47_19260at 79.000 kb on - strand, within IAI47_19260at 79.000 kb on - strand, within IAI47_19260at 79.074 kb on + strand, within IAI47_19260at 79.074 kb on + strand, within IAI47_19260at 79.074 kb on + strand, within IAI47_19260at 79.074 kb on + strand, within IAI47_19260at 79.075 kb on - strand, within IAI47_19260at 79.075 kb on - strand, within IAI47_19260at 79.098 kb on + strand, within IAI47_19260at 79.186 kb on + strand, within IAI47_19260at 79.248 kb on + strand, within IAI47_19260at 79.248 kb on + strand, within IAI47_19260at 79.249 kb on - strand, within IAI47_19260at 79.249 kb on - strand, within IAI47_19260at 79.249 kb on - strand, within IAI47_19260at 79.249 kb on - strand, within IAI47_19260at 79.249 kb on - strand, within IAI47_19260

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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76,372 + IAI47_19250 0.36 +0.3
76,379 + IAI47_19250 0.37 -1.0
76,380 - IAI47_19250 0.37 +1.0
76,380 - IAI47_19250 0.37 -0.1
76,392 + IAI47_19250 0.38 +0.0
76,393 - IAI47_19250 0.38 -1.2
76,393 - IAI47_19250 0.38 -1.4
76,515 + IAI47_19250 0.46 +2.0
76,516 - IAI47_19250 0.46 -1.7
76,535 + IAI47_19250 0.47 +2.0
76,535 + IAI47_19250 0.47 -1.4
76,535 + IAI47_19250 0.47 -2.4
76,535 + IAI47_19250 0.47 +0.4
76,536 - IAI47_19250 0.47 -0.6
76,536 - IAI47_19250 0.47 -1.0
76,536 - IAI47_19250 0.47 -1.1
76,539 + IAI47_19250 0.48 +0.0
76,539 + IAI47_19250 0.48 -1.7
76,539 + IAI47_19250 0.48 -0.1
76,540 - IAI47_19250 0.48 +0.7
76,544 + IAI47_19250 0.48 -1.0
76,545 - IAI47_19250 0.48 +1.0
76,604 - IAI47_19250 0.52 +1.1
76,626 - IAI47_19250 0.53 +0.2
76,626 - IAI47_19250 0.53 -0.1
76,662 - IAI47_19250 0.56 -0.0
76,672 + IAI47_19250 0.56 -0.4
76,672 + IAI47_19250 0.56 -1.7
76,673 - IAI47_19250 0.56 +1.6
76,731 + IAI47_19250 0.60 -0.4
76,732 - IAI47_19250 0.60 +0.4
76,732 - IAI47_19250 0.60 +2.3
76,874 + IAI47_19250 0.70 -1.4
76,874 + IAI47_19250 0.70 +1.1
76,875 - IAI47_19250 0.70 -0.2
76,875 - IAI47_19250 0.70 +1.7
76,951 + IAI47_19250 0.75 +1.0
76,952 - IAI47_19250 0.75 +2.7
76,952 - IAI47_19250 0.75 +0.0
77,097 - IAI47_19250 0.84 +1.1
77,190 + +0.6
77,204 + +0.8
77,205 - +0.8
77,210 + -1.2
77,210 + -0.3
77,210 + -0.6
77,210 + +0.1
77,211 - -1.6
77,211 - +0.2
77,211 - +0.0
77,211 - +0.1
77,211 - +0.7
77,211 - +0.2
77,211 - +0.8
77,211 - +0.0
77,211 - -0.6
77,301 + +2.0
77,307 + -0.6
77,308 - +1.2
77,323 + +2.2
77,323 + -1.7
77,323 + -1.7
77,324 - +2.9
77,324 - +0.1
77,357 - -1.2
77,384 + +0.3
77,384 + +0.3
77,384 + +0.7
77,385 - -1.2
77,537 + IAI47_19255 0.19 -1.0
77,538 - IAI47_19255 0.19 -1.7
77,563 + IAI47_19255 0.22 -1.1
77,564 - IAI47_19255 0.22 +1.0
77,564 - IAI47_19255 0.22 -0.3
77,564 - IAI47_19255 0.22 -0.9
77,564 - IAI47_19255 0.22 +0.3
77,564 - IAI47_19255 0.22 -0.2
77,579 + IAI47_19255 0.23 -0.6
77,580 - IAI47_19255 0.23 +0.2
77,580 - IAI47_19255 0.23 -1.3
77,600 + IAI47_19255 0.25 -0.7
77,600 + IAI47_19255 0.25 -0.3
77,600 + IAI47_19255 0.25 +3.0
77,633 + IAI47_19255 0.29 -1.3
77,633 + IAI47_19255 0.29 -1.4
77,634 - IAI47_19255 0.29 -0.8
77,641 + IAI47_19255 0.29 +0.8
77,642 - IAI47_19255 0.30 +1.9
77,690 + IAI47_19255 0.34 +0.0
77,691 - IAI47_19255 0.35 +1.7
77,738 + IAI47_19255 0.39 -0.4
77,739 - IAI47_19255 0.39 -0.1
77,804 + IAI47_19255 0.46 +2.2
77,804 + IAI47_19255 0.46 +2.7
77,804 + IAI47_19255 0.46 -0.9
77,805 - IAI47_19255 0.46 +0.4
77,805 - IAI47_19255 0.46 +1.6
77,805 - IAI47_19255 0.46 +2.7
77,805 - IAI47_19255 0.46 +1.3
77,805 - IAI47_19255 0.46 +0.2
77,819 + IAI47_19255 0.48 -0.6
77,820 - IAI47_19255 0.48 +0.4
77,850 - IAI47_19255 0.51 -0.4
77,871 + IAI47_19255 0.53 +0.1
77,871 + IAI47_19255 0.53 +0.1
77,872 - IAI47_19255 0.53 -0.6
77,872 - IAI47_19255 0.53 +0.3
77,960 + IAI47_19255 0.62 +2.0
77,960 + IAI47_19255 0.62 -0.2
77,960 + IAI47_19255 0.62 -0.3
77,980 - IAI47_19255 0.64 +1.0
77,993 + IAI47_19255 0.65 -0.0
77,993 + IAI47_19255 0.65 +0.2
77,994 - IAI47_19255 0.65 -1.1
78,127 - IAI47_19255 0.79 -1.3
78,134 + IAI47_19255 0.80 +0.1
78,134 + IAI47_19255 0.80 +2.3
78,134 + IAI47_19255 0.80 +4.2
78,135 - IAI47_19255 0.80 +0.7
78,135 - IAI47_19255 0.80 +2.4
78,135 - IAI47_19255 0.80 +0.6
78,135 - IAI47_19255 0.80 -1.2
78,135 - IAI47_19255 0.80 +1.5
78,181 + IAI47_19255 0.85 +0.1
78,181 + IAI47_19255 0.85 +2.2
78,181 + IAI47_19255 0.85 -0.4
78,182 - IAI47_19255 0.85 +2.6
78,182 - IAI47_19255 0.85 -1.4
78,182 - IAI47_19255 0.85 -0.4
78,182 - IAI47_19255 0.85 -0.9
78,182 - IAI47_19255 0.85 +1.2
78,182 - IAI47_19255 0.85 -0.6
78,184 + IAI47_19255 0.85 -1.3
78,184 + IAI47_19255 0.85 -0.4
78,194 + IAI47_19255 0.86 +0.8
78,194 + IAI47_19255 0.86 +3.8
78,194 + IAI47_19255 0.86 -2.6
78,195 - IAI47_19255 0.86 -1.2
78,200 + IAI47_19255 0.86 +1.5
78,200 + IAI47_19255 0.86 -0.7
78,200 + IAI47_19255 0.86 -0.2
78,313 - +0.1
78,354 - +0.4
78,354 - +0.1
78,368 + +0.9
78,368 + -0.9
78,368 + +1.1
78,368 + -2.0
78,368 + +1.1
78,368 + +1.0
78,368 + +0.1
78,368 + +0.3
78,369 - +0.4
78,369 - -0.7
78,369 - +0.5
78,369 - +0.5
78,400 + -1.4
78,411 + +1.5
78,412 - +0.7
78,447 + -0.9
78,492 - IAI47_19260 0.12 +0.6
78,492 - IAI47_19260 0.12 +1.7
78,567 + IAI47_19260 0.19 +3.9
78,567 + IAI47_19260 0.19 +1.1
78,567 + IAI47_19260 0.19 +0.3
78,680 + IAI47_19260 0.31 +0.5
78,680 + IAI47_19260 0.31 -0.3
78,680 + IAI47_19260 0.31 -1.1
78,681 - IAI47_19260 0.31 +0.3
78,681 - IAI47_19260 0.31 +1.3
78,681 - IAI47_19260 0.31 +0.6
78,681 - IAI47_19260 0.31 +1.0
78,681 - IAI47_19260 0.31 +1.4
78,682 + IAI47_19260 0.31 +0.9
78,682 + IAI47_19260 0.31 +0.6
78,723 - IAI47_19260 0.35 +0.2
78,723 - IAI47_19260 0.35 +2.7
78,794 + IAI47_19260 0.42 +0.4
78,794 + IAI47_19260 0.42 +0.1
78,794 + IAI47_19260 0.42 +1.1
78,794 + IAI47_19260 0.42 -1.1
78,794 + IAI47_19260 0.42 +0.7
78,794 + IAI47_19260 0.42 +0.2
78,794 + IAI47_19260 0.42 -0.5
78,794 + IAI47_19260 0.42 +0.9
78,794 + IAI47_19260 0.42 -1.3
78,794 + IAI47_19260 0.42 -0.7
78,795 - IAI47_19260 0.42 +0.7
78,795 - IAI47_19260 0.42 -1.4
78,795 - IAI47_19260 0.42 -0.7
78,795 - IAI47_19260 0.42 -0.9
78,795 - IAI47_19260 0.42 +0.0
78,795 - IAI47_19260 0.42 -0.7
78,795 - IAI47_19260 0.42 +0.1
78,798 + IAI47_19260 0.42 -0.4
78,798 + IAI47_19260 0.42 -1.6
78,798 + IAI47_19260 0.42 -0.4
78,798 + IAI47_19260 0.42 +0.6
78,798 + IAI47_19260 0.42 +3.2
78,798 + IAI47_19260 0.42 -2.6
78,799 - IAI47_19260 0.42 +0.6
78,799 - IAI47_19260 0.42 -1.1
78,799 - IAI47_19260 0.42 -1.0
78,799 - IAI47_19260 0.42 -0.3
78,878 - IAI47_19260 0.50 +0.5
78,904 - IAI47_19260 0.52 -0.2
78,933 + IAI47_19260 0.55 +0.1
78,949 - IAI47_19260 0.57 -0.0
79,000 - IAI47_19260 0.62 +1.7
79,000 - IAI47_19260 0.62 -1.1
79,074 + IAI47_19260 0.69 +0.3
79,074 + IAI47_19260 0.69 -2.4
79,074 + IAI47_19260 0.69 -1.9
79,074 + IAI47_19260 0.69 +1.7
79,075 - IAI47_19260 0.69 -1.1
79,075 - IAI47_19260 0.69 +1.4
79,098 + IAI47_19260 0.71 -0.4
79,186 + IAI47_19260 0.80 -0.2
79,248 + IAI47_19260 0.86 +1.1
79,248 + IAI47_19260 0.86 +1.1
79,249 - IAI47_19260 0.86 +0.0
79,249 - IAI47_19260 0.86 +0.5
79,249 - IAI47_19260 0.86 +1.7
79,249 - IAI47_19260 0.86 +0.2
79,249 - IAI47_19260 0.86 +0.5

Or see this region's nucleotide sequence