Strain Fitness in Pantoea sp. MT58 around IAI47_19020

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19015 and IAI47_19020 are separated by 19 nucleotidesIAI47_19020 and IAI47_19025 are separated by 115 nucleotides IAI47_19015: IAI47_19015 - LysR family transcriptional regulator, at 34,305 to 35,189 _19015 IAI47_19020: IAI47_19020 - cupin domain-containing protein, at 35,209 to 35,607 _19020 IAI47_19025: IAI47_19025 - LacI family DNA-binding transcriptional regulator, at 35,723 to 36,739 _19025 Position (kb) 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.209 kb on - strandat 34.209 kb on - strandat 34.209 kb on - strandat 34.219 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.241 kb on - strandat 34.241 kb on - strandat 34.241 kb on - strandat 34.241 kb on - strandat 34.241 kb on - strandat 34.254 kb on + strandat 34.255 kb on - strandat 34.256 kb on + strandat 34.256 kb on + strandat 34.256 kb on + strandat 34.256 kb on + strandat 34.262 kb on + strandat 34.263 kb on - strandat 34.263 kb on - strandat 34.300 kb on - strandat 34.304 kb on + strandat 34.304 kb on + strandat 34.304 kb on + strandat 34.304 kb on + strandat 34.304 kb on + strandat 34.305 kb on - strandat 34.305 kb on - strandat 34.305 kb on - strandat 34.439 kb on + strand, within IAI47_19015at 34.439 kb on + strand, within IAI47_19015at 34.439 kb on + strand, within IAI47_19015at 34.439 kb on + strand, within IAI47_19015at 34.440 kb on - strand, within IAI47_19015at 34.440 kb on - strand, within IAI47_19015at 34.440 kb on - strand, within IAI47_19015at 34.440 kb on - strand, within IAI47_19015at 34.440 kb on - strand, within IAI47_19015at 34.442 kb on + strand, within IAI47_19015at 34.443 kb on - strand, within IAI47_19015at 34.443 kb on - strand, within IAI47_19015at 34.443 kb on - strand, within IAI47_19015at 34.445 kb on + strand, within IAI47_19015at 34.445 kb on + strand, within IAI47_19015at 34.446 kb on - strand, within IAI47_19015at 34.446 kb on - strand, within IAI47_19015at 34.446 kb on - strand, within IAI47_19015at 34.446 kb on - strand, within IAI47_19015at 34.503 kb on + strand, within IAI47_19015at 34.504 kb on - strand, within IAI47_19015at 34.536 kb on - strand, within IAI47_19015at 34.649 kb on + strand, within IAI47_19015at 34.659 kb on + strand, within IAI47_19015at 34.678 kb on - strand, within IAI47_19015at 34.722 kb on + strand, within IAI47_19015at 34.722 kb on + strand, within IAI47_19015at 34.735 kb on + strand, within IAI47_19015at 34.736 kb on - strand, within IAI47_19015at 34.736 kb on - strand, within IAI47_19015at 34.736 kb on - strand, within IAI47_19015at 34.736 kb on - strand, within IAI47_19015at 34.764 kb on - strand, within IAI47_19015at 34.764 kb on - strand, within IAI47_19015at 34.764 kb on - strand, within IAI47_19015at 34.822 kb on - strand, within IAI47_19015at 34.822 kb on - strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.879 kb on + strand, within IAI47_19015at 34.880 kb on - strand, within IAI47_19015at 34.880 kb on - strand, within IAI47_19015at 34.880 kb on - strand, within IAI47_19015at 34.880 kb on - strand, within IAI47_19015at 34.880 kb on - strand, within IAI47_19015at 34.911 kb on + strand, within IAI47_19015at 34.941 kb on - strand, within IAI47_19015at 34.941 kb on - strand, within IAI47_19015at 34.941 kb on - strand, within IAI47_19015at 35.055 kb on + strand, within IAI47_19015at 35.055 kb on + strand, within IAI47_19015at 35.055 kb on + strand, within IAI47_19015at 35.056 kb on - strand, within IAI47_19015at 35.056 kb on - strand, within IAI47_19015at 35.056 kb on - strand, within IAI47_19015at 35.056 kb on - strand, within IAI47_19015at 35.078 kb on + strand, within IAI47_19015at 35.078 kb on + strand, within IAI47_19015at 35.078 kb on + strand, within IAI47_19015at 35.078 kb on + strand, within IAI47_19015at 35.078 kb on + strand, within IAI47_19015at 35.079 kb on - strand, within IAI47_19015at 35.079 kb on - strand, within IAI47_19015at 35.079 kb on - strand, within IAI47_19015at 35.079 kb on - strand, within IAI47_19015at 35.081 kb on + strand, within IAI47_19015at 35.081 kb on + strand, within IAI47_19015at 35.082 kb on - strand, within IAI47_19015at 35.082 kb on - strand, within IAI47_19015at 35.118 kb on + strandat 35.118 kb on + strandat 35.118 kb on + strandat 35.119 kb on - strandat 35.119 kb on - strandat 35.119 kb on - strandat 35.119 kb on - strandat 35.119 kb on - strandat 35.119 kb on - strandat 35.124 kb on + strandat 35.124 kb on + strandat 35.167 kb on + strandat 35.168 kb on - strandat 35.210 kb on + strandat 35.211 kb on - strandat 35.211 kb on - strandat 35.222 kb on + strandat 35.222 kb on + strandat 35.222 kb on + strandat 35.223 kb on - strandat 35.223 kb on - strandat 35.289 kb on + strand, within IAI47_19020at 35.289 kb on + strand, within IAI47_19020at 35.289 kb on + strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.290 kb on - strand, within IAI47_19020at 35.355 kb on + strand, within IAI47_19020at 35.355 kb on + strand, within IAI47_19020at 35.356 kb on - strand, within IAI47_19020at 35.356 kb on - strand, within IAI47_19020at 35.379 kb on + strand, within IAI47_19020at 35.380 kb on - strand, within IAI47_19020at 35.380 kb on - strand, within IAI47_19020at 35.380 kb on - strand, within IAI47_19020at 35.421 kb on + strand, within IAI47_19020at 35.421 kb on + strand, within IAI47_19020at 35.422 kb on - strand, within IAI47_19020at 35.448 kb on + strand, within IAI47_19020at 35.449 kb on - strand, within IAI47_19020at 35.449 kb on - strand, within IAI47_19020at 35.449 kb on - strand, within IAI47_19020at 35.449 kb on - strand, within IAI47_19020at 35.449 kb on - strand, within IAI47_19020at 35.535 kb on + strand, within IAI47_19020at 35.535 kb on + strand, within IAI47_19020at 35.535 kb on + strand, within IAI47_19020at 35.536 kb on - strand, within IAI47_19020at 35.536 kb on - strand, within IAI47_19020at 35.536 kb on - strand, within IAI47_19020at 35.622 kb on - strandat 35.622 kb on - strandat 35.625 kb on - strandat 35.625 kb on - strandat 35.636 kb on + strandat 35.636 kb on + strandat 35.636 kb on + strandat 35.637 kb on - strandat 35.637 kb on - strandat 35.642 kb on + strandat 35.681 kb on + strandat 35.681 kb on + strandat 35.681 kb on + strandat 35.681 kb on + strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.682 kb on - strandat 35.689 kb on + strandat 35.691 kb on + strandat 35.702 kb on + strandat 35.703 kb on - strandat 35.703 kb on - strandat 35.705 kb on + strandat 35.705 kb on + strandat 35.705 kb on + strandat 35.706 kb on - strandat 35.706 kb on - strandat 35.706 kb on - strandat 35.706 kb on - strandat 35.706 kb on - strandat 35.708 kb on + strandat 35.709 kb on - strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.737 kb on + strandat 35.738 kb on - strandat 35.738 kb on - strandat 35.738 kb on - strandat 35.738 kb on - strandat 35.738 kb on - strandat 35.738 kb on - strandat 35.739 kb on + strandat 35.739 kb on + strandat 35.740 kb on - strandat 35.740 kb on - strandat 35.749 kb on + strandat 35.749 kb on + strandat 35.750 kb on - strandat 35.750 kb on - strandat 35.750 kb on - strandat 35.750 kb on - strandat 35.750 kb on - strandat 35.752 kb on + strandat 35.766 kb on + strandat 35.793 kb on - strandat 35.793 kb on - strandat 35.794 kb on + strandat 35.794 kb on + strandat 35.794 kb on + strandat 35.795 kb on - strandat 35.795 kb on - strandat 35.795 kb on - strandat 35.795 kb on - strandat 35.795 kb on - strandat 35.846 kb on + strand, within IAI47_19025at 35.846 kb on + strand, within IAI47_19025at 35.847 kb on - strand, within IAI47_19025at 35.847 kb on - strand, within IAI47_19025at 35.851 kb on + strand, within IAI47_19025at 35.851 kb on + strand, within IAI47_19025at 35.852 kb on - strand, within IAI47_19025at 35.876 kb on - strand, within IAI47_19025at 35.933 kb on + strand, within IAI47_19025at 35.966 kb on + strand, within IAI47_19025at 35.966 kb on + strand, within IAI47_19025at 35.966 kb on + strand, within IAI47_19025at 35.994 kb on + strand, within IAI47_19025at 36.035 kb on + strand, within IAI47_19025at 36.061 kb on + strand, within IAI47_19025at 36.061 kb on + strand, within IAI47_19025at 36.062 kb on - strand, within IAI47_19025at 36.062 kb on - strand, within IAI47_19025at 36.062 kb on - strand, within IAI47_19025at 36.062 kb on - strand, within IAI47_19025at 36.062 kb on - strand, within IAI47_19025at 36.185 kb on - strand, within IAI47_19025at 36.264 kb on + strand, within IAI47_19025at 36.265 kb on - strand, within IAI47_19025at 36.265 kb on - strand, within IAI47_19025at 36.287 kb on + strand, within IAI47_19025at 36.287 kb on + strand, within IAI47_19025at 36.288 kb on - strand, within IAI47_19025at 36.288 kb on - strand, within IAI47_19025at 36.316 kb on + strand, within IAI47_19025at 36.316 kb on + strand, within IAI47_19025at 36.316 kb on + strand, within IAI47_19025at 36.340 kb on + strand, within IAI47_19025at 36.350 kb on - strand, within IAI47_19025at 36.350 kb on - strand, within IAI47_19025at 36.350 kb on - strand, within IAI47_19025at 36.350 kb on - strand, within IAI47_19025at 36.350 kb on - strand, within IAI47_19025at 36.393 kb on + strand, within IAI47_19025at 36.394 kb on - strand, within IAI47_19025at 36.406 kb on + strand, within IAI47_19025at 36.436 kb on + strand, within IAI47_19025at 36.437 kb on - strand, within IAI47_19025at 36.515 kb on + strand, within IAI47_19025at 36.515 kb on + strand, within IAI47_19025at 36.541 kb on + strand, within IAI47_19025at 36.541 kb on + strand, within IAI47_19025at 36.542 kb on - strand, within IAI47_19025at 36.542 kb on - strand, within IAI47_19025

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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34,209 - -1.2
34,209 - +1.4
34,209 - +0.1
34,219 + -0.2
34,240 + -0.8
34,240 + -0.1
34,240 + +1.7
34,240 + +0.7
34,240 + -0.3
34,240 + +2.1
34,240 + -0.4
34,240 + +0.6
34,241 - +1.2
34,241 - +1.6
34,241 - +0.9
34,241 - -1.4
34,241 - -2.2
34,254 + +2.2
34,255 - -0.5
34,256 + -1.3
34,256 + +0.6
34,256 + -0.3
34,256 + -0.4
34,262 + -1.7
34,263 - -1.7
34,263 - +0.1
34,300 - -1.2
34,304 + +1.1
34,304 + -0.1
34,304 + +0.6
34,304 + +1.9
34,304 + -0.6
34,305 - +1.6
34,305 - -0.7
34,305 - -0.3
34,439 + IAI47_19015 0.15 -0.9
34,439 + IAI47_19015 0.15 +0.3
34,439 + IAI47_19015 0.15 +0.7
34,439 + IAI47_19015 0.15 +1.4
34,440 - IAI47_19015 0.15 -0.5
34,440 - IAI47_19015 0.15 +0.9
34,440 - IAI47_19015 0.15 -1.4
34,440 - IAI47_19015 0.15 +1.1
34,440 - IAI47_19015 0.15 -0.6
34,442 + IAI47_19015 0.15 -0.4
34,443 - IAI47_19015 0.16 -0.9
34,443 - IAI47_19015 0.16 -0.1
34,443 - IAI47_19015 0.16 +1.1
34,445 + IAI47_19015 0.16 +0.8
34,445 + IAI47_19015 0.16 +0.1
34,446 - IAI47_19015 0.16 -0.1
34,446 - IAI47_19015 0.16 -1.0
34,446 - IAI47_19015 0.16 +0.4
34,446 - IAI47_19015 0.16 -1.1
34,503 + IAI47_19015 0.22 +0.4
34,504 - IAI47_19015 0.22 -0.2
34,536 - IAI47_19015 0.26 +0.1
34,649 + IAI47_19015 0.39 +1.5
34,659 + IAI47_19015 0.40 +0.6
34,678 - IAI47_19015 0.42 -1.4
34,722 + IAI47_19015 0.47 +0.7
34,722 + IAI47_19015 0.47 -0.9
34,735 + IAI47_19015 0.49 +2.1
34,736 - IAI47_19015 0.49 -1.7
34,736 - IAI47_19015 0.49 -2.7
34,736 - IAI47_19015 0.49 -0.6
34,736 - IAI47_19015 0.49 +0.2
34,764 - IAI47_19015 0.52 +1.1
34,764 - IAI47_19015 0.52 -2.4
34,764 - IAI47_19015 0.52 -1.3
34,822 - IAI47_19015 0.58 -1.2
34,822 - IAI47_19015 0.58 -0.2
34,879 + IAI47_19015 0.65 -0.3
34,879 + IAI47_19015 0.65 -1.0
34,879 + IAI47_19015 0.65 -1.0
34,879 + IAI47_19015 0.65 -0.5
34,879 + IAI47_19015 0.65 -0.7
34,879 + IAI47_19015 0.65 -0.6
34,880 - IAI47_19015 0.65 -0.0
34,880 - IAI47_19015 0.65 +0.8
34,880 - IAI47_19015 0.65 +1.0
34,880 - IAI47_19015 0.65 -1.0
34,880 - IAI47_19015 0.65 +0.1
34,911 + IAI47_19015 0.68 +0.2
34,941 - IAI47_19015 0.72 -1.4
34,941 - IAI47_19015 0.72 +1.5
34,941 - IAI47_19015 0.72 -0.9
35,055 + IAI47_19015 0.85 -1.5
35,055 + IAI47_19015 0.85 +0.5
35,055 + IAI47_19015 0.85 -1.1
35,056 - IAI47_19015 0.85 +0.7
35,056 - IAI47_19015 0.85 +0.5
35,056 - IAI47_19015 0.85 +0.8
35,056 - IAI47_19015 0.85 +0.1
35,078 + IAI47_19015 0.87 -0.4
35,078 + IAI47_19015 0.87 +1.0
35,078 + IAI47_19015 0.87 -2.7
35,078 + IAI47_19015 0.87 -0.1
35,078 + IAI47_19015 0.87 -0.1
35,079 - IAI47_19015 0.87 +0.3
35,079 - IAI47_19015 0.87 +2.0
35,079 - IAI47_19015 0.87 +1.4
35,079 - IAI47_19015 0.87 -0.6
35,081 + IAI47_19015 0.88 +0.3
35,081 + IAI47_19015 0.88 +2.3
35,082 - IAI47_19015 0.88 +1.1
35,082 - IAI47_19015 0.88 -1.2
35,118 + -1.4
35,118 + -0.2
35,118 + -1.1
35,119 - +1.4
35,119 - +0.1
35,119 - -0.4
35,119 - +2.2
35,119 - -1.7
35,119 - +1.1
35,124 + +0.5
35,124 + +0.2
35,167 + -0.8
35,168 - +1.1
35,210 + -0.3
35,211 - +0.1
35,211 - -0.1
35,222 + -0.4
35,222 + -1.8
35,222 + +0.4
35,223 - +0.0
35,223 - -1.2
35,289 + IAI47_19020 0.20 +0.8
35,289 + IAI47_19020 0.20 -1.7
35,289 + IAI47_19020 0.20 -0.1
35,290 - IAI47_19020 0.20 -2.4
35,290 - IAI47_19020 0.20 -0.7
35,290 - IAI47_19020 0.20 +1.9
35,290 - IAI47_19020 0.20 +2.7
35,290 - IAI47_19020 0.20 -1.0
35,290 - IAI47_19020 0.20 +1.1
35,290 - IAI47_19020 0.20 -1.5
35,290 - IAI47_19020 0.20 -1.3
35,290 - IAI47_19020 0.20 -1.5
35,355 + IAI47_19020 0.37 +1.7
35,355 + IAI47_19020 0.37 +1.5
35,356 - IAI47_19020 0.37 -0.7
35,356 - IAI47_19020 0.37 -1.0
35,379 + IAI47_19020 0.43 -0.9
35,380 - IAI47_19020 0.43 +0.6
35,380 - IAI47_19020 0.43 +2.4
35,380 - IAI47_19020 0.43 -1.1
35,421 + IAI47_19020 0.53 -1.4
35,421 + IAI47_19020 0.53 -0.3
35,422 - IAI47_19020 0.53 +1.8
35,448 + IAI47_19020 0.60 +0.3
35,449 - IAI47_19020 0.60 -0.3
35,449 - IAI47_19020 0.60 -0.5
35,449 - IAI47_19020 0.60 +1.1
35,449 - IAI47_19020 0.60 -1.4
35,449 - IAI47_19020 0.60 -0.3
35,535 + IAI47_19020 0.82 -0.6
35,535 + IAI47_19020 0.82 +0.9
35,535 + IAI47_19020 0.82 -0.7
35,536 - IAI47_19020 0.82 +1.5
35,536 - IAI47_19020 0.82 +0.5
35,536 - IAI47_19020 0.82 +0.7
35,622 - -0.1
35,622 - +1.3
35,625 - -1.0
35,625 - -0.7
35,636 + -0.7
35,636 + -0.1
35,636 + -1.7
35,637 - +0.4
35,637 - +0.7
35,642 + +2.9
35,681 + -0.1
35,681 + +2.4
35,681 + +2.2
35,681 + -1.1
35,682 - +3.6
35,682 - -0.2
35,682 - +1.5
35,682 - -3.3
35,682 - -1.2
35,682 - +0.9
35,682 - -1.5
35,682 - +0.1
35,682 - +1.4
35,689 + +0.1
35,691 + -1.1
35,702 + +0.0
35,703 - -0.4
35,703 - +1.6
35,705 + +1.6
35,705 + -1.7
35,705 + -1.1
35,706 - -1.4
35,706 - +1.6
35,706 - -2.6
35,706 - +0.6
35,706 - +2.9
35,708 + +1.0
35,709 - -0.7
35,737 + -0.4
35,737 + -1.6
35,737 + +2.9
35,737 + +0.4
35,737 + -0.2
35,737 + -1.6
35,737 + +1.1
35,737 + -0.9
35,737 + +0.1
35,737 + -1.7
35,738 - +1.1
35,738 - -0.8
35,738 - -1.0
35,738 - +0.3
35,738 - +2.6
35,738 - +0.5
35,739 + -0.9
35,739 + +0.9
35,740 - +1.8
35,740 - +0.3
35,749 + +0.1
35,749 + +1.5
35,750 - +0.8
35,750 - -1.4
35,750 - +1.0
35,750 - -0.6
35,750 - -1.8
35,752 + -0.6
35,766 + +1.8
35,793 - -0.6
35,793 - -1.4
35,794 + -1.4
35,794 + +1.1
35,794 + -0.2
35,795 - -1.3
35,795 - +0.5
35,795 - -0.9
35,795 - -0.2
35,795 - +0.9
35,846 + IAI47_19025 0.12 -1.1
35,846 + IAI47_19025 0.12 -0.7
35,847 - IAI47_19025 0.12 -0.7
35,847 - IAI47_19025 0.12 -1.1
35,851 + IAI47_19025 0.13 -0.9
35,851 + IAI47_19025 0.13 +0.4
35,852 - IAI47_19025 0.13 +0.0
35,876 - IAI47_19025 0.15 -0.7
35,933 + IAI47_19025 0.21 +2.5
35,966 + IAI47_19025 0.24 +0.3
35,966 + IAI47_19025 0.24 -0.6
35,966 + IAI47_19025 0.24 -1.6
35,994 + IAI47_19025 0.27 -1.9
36,035 + IAI47_19025 0.31 +1.7
36,061 + IAI47_19025 0.33 -1.3
36,061 + IAI47_19025 0.33 -0.3
36,062 - IAI47_19025 0.33 +1.4
36,062 - IAI47_19025 0.33 +2.9
36,062 - IAI47_19025 0.33 -2.1
36,062 - IAI47_19025 0.33 +0.1
36,062 - IAI47_19025 0.33 +1.7
36,185 - IAI47_19025 0.45 +2.3
36,264 + IAI47_19025 0.53 +0.1
36,265 - IAI47_19025 0.53 +0.1
36,265 - IAI47_19025 0.53 -0.1
36,287 + IAI47_19025 0.55 +1.9
36,287 + IAI47_19025 0.55 -1.0
36,288 - IAI47_19025 0.56 -0.9
36,288 - IAI47_19025 0.56 +2.2
36,316 + IAI47_19025 0.58 -1.2
36,316 + IAI47_19025 0.58 +0.3
36,316 + IAI47_19025 0.58 -1.0
36,340 + IAI47_19025 0.61 +0.9
36,350 - IAI47_19025 0.62 +0.0
36,350 - IAI47_19025 0.62 +0.8
36,350 - IAI47_19025 0.62 -0.3
36,350 - IAI47_19025 0.62 -0.4
36,350 - IAI47_19025 0.62 -0.3
36,393 + IAI47_19025 0.66 +2.4
36,394 - IAI47_19025 0.66 +0.1
36,406 + IAI47_19025 0.67 -1.3
36,436 + IAI47_19025 0.70 +1.0
36,437 - IAI47_19025 0.70 +1.1
36,515 + IAI47_19025 0.78 -0.1
36,515 + IAI47_19025 0.78 +0.4
36,541 + IAI47_19025 0.80 -1.9
36,541 + IAI47_19025 0.80 -0.2
36,542 - IAI47_19025 0.81 -1.4
36,542 - IAI47_19025 0.81 +0.3

Or see this region's nucleotide sequence