Strain Fitness in Pantoea sp. MT58 around IAI47_09870

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,088,417	+		IAI47_09865	0.21	+1.5
2,088,470	-		IAI47_09865	0.27	+3.1
2,088,517	-		IAI47_09865	0.32	-0.7
2,088,517	-		IAI47_09865	0.32	-0.6
2,088,530	-		IAI47_09865	0.34	-2.3
2,088,541	+		IAI47_09865	0.35	+0.6
2,088,562	+		IAI47_09865	0.37	-0.2
2,088,562	+		IAI47_09865	0.37	+0.5
2,088,562	+		IAI47_09865	0.37	+1.7
2,088,562	+		IAI47_09865	0.37	+1.3
2,088,565	+		IAI47_09865	0.38	-0.3
2,088,568	+		IAI47_09865	0.38	+0.1
2,088,568	+		IAI47_09865	0.38	+1.1
2,088,568	+		IAI47_09865	0.38	+1.7
2,088,569	-		IAI47_09865	0.38	-0.9
2,088,569	-		IAI47_09865	0.38	-1.2
2,088,627	+		IAI47_09865	0.45	+0.1
2,088,628	-		IAI47_09865	0.45	+0.2
2,088,628	-		IAI47_09865	0.45	-0.9
2,088,635	-		IAI47_09865	0.46	-0.8
2,088,635	-		IAI47_09865	0.46	-0.7
2,088,641	-		IAI47_09865	0.46	+0.9
2,088,689	-		IAI47_09865	0.52	+0.1
2,088,722	-		IAI47_09865	0.55	+0.3
2,088,735	-		IAI47_09865	0.57	-0.2
2,088,873	+		IAI47_09865	0.72	-1.7
2,088,874	-		IAI47_09865	0.72	-1.5
2,088,884	+		IAI47_09865	0.73	+3.7
2,088,884	+		IAI47_09865	0.73	-1.8
2,088,884	+		IAI47_09865	0.73	+3.1
2,088,884	+		IAI47_09865	0.73	-1.2
2,088,884	+		IAI47_09865	0.73	-1.7
2,088,884	+		IAI47_09865	0.73	+0.3
2,088,884	+		IAI47_09865	0.73	-1.3
2,088,884	+		IAI47_09865	0.73	+0.2
2,088,885	-		IAI47_09865	0.74	+0.7
2,088,906	+		IAI47_09865	0.76	+2.2
2,088,917	+		IAI47_09865	0.77	+1.1
2,088,917	+		IAI47_09865	0.77	+2.1
2,088,917	+		IAI47_09865	0.77	-0.1
2,088,952	+		IAI47_09865	0.81	+0.8
2,088,952	+		IAI47_09865	0.81	-0.2
2,088,953	-		IAI47_09865	0.81	+0.3
2,088,953	-		IAI47_09865	0.81	+0.2
2,088,990	+		IAI47_09865	0.85	+1.1
2,089,106	-				-0.7
2,089,123	+				-1.3
2,089,123	+				-1.0
2,089,123	+				-1.2
2,089,123	+				-0.2
2,089,123	+				+1.8
2,089,123	+				-0.9
2,089,123	+				+0.0
2,089,123	+				-0.9
2,089,123	+				+1.8
2,089,124	-				+1.2
2,089,124	-				+0.7
2,089,124	-				-1.7
2,089,124	-				+1.5
2,089,124	-				+1.7
2,089,142	+				+1.2
2,089,142	+				+1.5
2,089,154	+				+0.1
2,089,154	+				-1.9
2,089,154	+				-0.5
2,089,154	+				+0.8
2,089,155	-				+1.1
2,089,155	-				+2.5
2,089,155	-				-0.5
2,089,155	-				-1.8
2,089,155	-				+0.7
2,089,229	+				-1.4
2,089,229	+				+3.7
2,089,229	+				+2.2
2,089,230	-				+0.4
2,089,230	-				+2.7
2,089,230	-				+1.1
2,089,245	+				-0.2
2,089,246	-				+1.2
2,089,311	-				+1.4
2,089,340	-				-0.9
2,089,340	-				-0.3
2,089,342	+				-0.3
2,089,351	+				+0.3
2,089,428	-				-1.0
2,089,429	+				-0.2
2,089,429	+				-0.3
2,089,429	+				-1.3
2,089,430	-				+0.1
2,089,430	-				-1.0
2,089,430	-				+0.3
2,089,430	-				+2.4
2,089,430	-				-0.3
2,089,430	-				-0.2
2,089,556	+		IAI47_09870	0.17	+1.8
2,089,556	+		IAI47_09870	0.17	-0.0
2,089,556	+		IAI47_09870	0.17	+1.5
2,089,557	-		IAI47_09870	0.17	+1.1
2,089,557	-		IAI47_09870	0.17	+0.4
2,089,581	+		IAI47_09870	0.19	+0.3
2,089,582	-		IAI47_09870	0.19	+0.2
2,089,582	-		IAI47_09870	0.19	+1.5
2,089,932	+		IAI47_09870	0.53	-0.4
2,089,933	-		IAI47_09870	0.53	-0.6
2,089,935	+		IAI47_09870	0.53	+0.4
2,089,969	-		IAI47_09870	0.57	-0.9
2,089,998	-		IAI47_09870	0.59	-1.0
2,090,010	+		IAI47_09870	0.60	-1.0
2,090,028	+		IAI47_09870	0.62	-0.3
2,090,041	-		IAI47_09870	0.63	+1.5
2,090,041	-		IAI47_09870	0.63	+0.1
2,090,150	+		IAI47_09870	0.74	-1.3
2,090,183	+		IAI47_09870	0.77	+0.7
2,090,209	+		IAI47_09870	0.80	+1.2
2,090,209	+		IAI47_09870	0.80	-0.3
2,090,210	-		IAI47_09870	0.80	+3.7
2,090,396	-				+0.5
2,090,406	+				-1.5
2,090,406	+				+0.2
2,090,407	-				-1.0
2,090,407	-				+0.5
2,090,421	+				+1.7
2,090,421	+				+1.1
2,090,421	+				+1.7
2,090,421	+				+1.3
2,090,421	+				+1.0
2,090,422	-				+1.1
2,090,422	-				+0.5
2,090,534	-				+0.2
2,090,567	+				-1.5
2,090,570	+				+2.7
2,090,571	-				+3.0
2,090,581	+				-0.9
2,090,649	-				-0.2
2,090,683	+				+0.6
2,090,683	+				+3.0
2,090,684	-				-0.2
2,090,716	+				+0.3
2,090,716	+				+0.5
2,090,716	+				-0.8
2,090,716	+				-2.3
2,090,717	-				+0.8
2,090,717	-				+0.2
2,090,789	-		IAI47_09875	0.14	+0.1
2,090,828	+		IAI47_09875	0.18	-2.2
2,090,829	-		IAI47_09875	0.18	-1.3
2,090,829	-		IAI47_09875	0.18	-1.9
2,090,869	+		IAI47_09875	0.22	+1.8
2,090,933	+		IAI47_09875	0.28	+3.1
2,090,933	+		IAI47_09875	0.28	-0.6
2,090,933	+		IAI47_09875	0.28	+0.3
2,090,933	+		IAI47_09875	0.28	-1.2
2,090,934	-		IAI47_09875	0.29	-0.7
2,090,935	+		IAI47_09875	0.29	+1.7
2,090,935	+		IAI47_09875	0.29	-2.4
2,090,935	+		IAI47_09875	0.29	+2.9
2,090,935	+		IAI47_09875	0.29	+1.2
2,090,935	+		IAI47_09875	0.29	+0.7
2,090,936	-		IAI47_09875	0.29	+0.7
2,090,936	-		IAI47_09875	0.29	+0.5
2,090,936	-		IAI47_09875	0.29	+0.9
2,090,936	-		IAI47_09875	0.29	-1.3
2,091,038	+		IAI47_09875	0.39	+1.8
2,091,039	-		IAI47_09875	0.39	+2.2
2,091,040	+		IAI47_09875	0.39	-0.5
2,091,041	-		IAI47_09875	0.39	+0.7
2,091,113	-		IAI47_09875	0.46	+0.3
2,091,158	+		IAI47_09875	0.50	+1.7
2,091,158	+		IAI47_09875	0.50	+1.8
2,091,158	+		IAI47_09875	0.50	+0.3
2,091,158	+		IAI47_09875	0.50	-0.9
2,091,158	+		IAI47_09875	0.50	+0.5
2,091,159	-		IAI47_09875	0.51	-0.2
2,091,159	-		IAI47_09875	0.51	-1.9
2,091,160	+		IAI47_09875	0.51	+0.0
2,091,160	+		IAI47_09875	0.51	+2.2
2,091,160	+		IAI47_09875	0.51	-1.3
2,091,160	+		IAI47_09875	0.51	+4.2
2,091,160	+		IAI47_09875	0.51	+0.1
2,091,160	+		IAI47_09875	0.51	-0.9
2,091,160	+		IAI47_09875	0.51	-0.5
2,091,161	-		IAI47_09875	0.51	-2.0
2,091,161	-		IAI47_09875	0.51	+0.1
2,091,161	-		IAI47_09875	0.51	+1.2
2,091,161	-		IAI47_09875	0.51	-0.9
2,091,161	-		IAI47_09875	0.51	+1.2
2,091,187	+		IAI47_09875	0.53	+1.3
2,091,188	-		IAI47_09875	0.53	-0.9
2,091,188	-		IAI47_09875	0.53	+0.2
2,091,188	-		IAI47_09875	0.53	-0.2
2,091,212	+		IAI47_09875	0.56	+0.1
2,091,212	+		IAI47_09875	0.56	+0.1
2,091,213	-		IAI47_09875	0.56	+1.0
2,091,246	-		IAI47_09875	0.59	+2.1
2,091,246	-		IAI47_09875	0.59	+0.2
2,091,246	-		IAI47_09875	0.59	-1.2
2,091,327	+		IAI47_09875	0.67	+1.3
2,091,356	-		IAI47_09875	0.70	-0.3
2,091,356	-		IAI47_09875	0.70	+2.5
2,091,387	-		IAI47_09875	0.73	+0.3