Strain Fitness in Pantoea sp. MT58 around IAI47_09110

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,923,482	-		IAI47_09100	0.57	-1.7
1,923,498	-		IAI47_09100	0.58	-1.9
1,923,659	-		IAI47_09100	0.69	+0.1
1,923,661	-		IAI47_09100	0.69	-1.4
1,923,661	-		IAI47_09100	0.69	-0.7
1,923,674	+		IAI47_09100	0.70	-1.8
1,923,674	+		IAI47_09100	0.70	-2.5
1,923,674	+		IAI47_09100	0.70	-1.7
1,923,674	+		IAI47_09100	0.70	-2.2
1,923,674	+		IAI47_09100	0.70	-2.5
1,923,674	+		IAI47_09100	0.70	-0.9
1,923,674	+		IAI47_09100	0.70	-1.7
1,923,674	+		IAI47_09100	0.70	-0.9
1,923,675	-		IAI47_09100	0.70	-1.9
1,923,675	-		IAI47_09100	0.70	-2.1
1,923,675	-		IAI47_09100	0.70	-1.4
1,923,675	-		IAI47_09100	0.70	-3.0
1,923,719	-		IAI47_09100	0.73	-1.2
1,923,719	-		IAI47_09100	0.73	-0.6
1,923,736	+		IAI47_09100	0.74	-0.5
1,923,736	+		IAI47_09100	0.74	+0.4
1,923,737	-		IAI47_09100	0.75	-1.0
1,923,877	+		IAI47_09100	0.84	-0.7
1,923,878	-		IAI47_09100	0.84	-0.1
1,923,916	+		IAI47_09100	0.87	-1.9
1,923,917	-		IAI47_09100	0.87	-0.9
1,923,959	+		IAI47_09100	0.90	-1.8
1,923,959	+		IAI47_09100	0.90	-1.5
1,923,973	+				-1.0
1,923,973	+				-0.6
1,923,974	-				-0.5
1,923,974	-				-0.7
1,923,974	-				-1.2
1,923,975	+				-2.1
1,923,975	+				-0.6
1,923,975	+				-1.1
1,923,975	+				-1.1
1,923,975	+				-2.3
1,923,975	+				-1.4
1,923,975	+				-1.2
1,923,975	+				-1.5
1,923,976	-				+0.4
1,923,976	-				-1.2
1,923,976	-				-1.1
1,923,976	-				-2.0
1,923,976	-				-1.9
1,923,976	-				+1.1
1,923,976	-				-2.6
1,924,063	-				-2.5
1,924,070	+				+0.0
1,924,071	-				-1.7
1,924,077	-				-1.6
1,924,077	-				-1.3
1,924,095	+				-0.5
1,924,096	-				-1.2
1,924,096	-				-1.6
1,924,108	+				-2.3
1,924,147	+				-3.3
1,924,147	+				-1.9
1,924,148	-				-4.1
1,924,230	+				-2.0
1,924,230	+				-1.3
1,924,230	+				-1.5
1,924,230	+				-0.8
1,924,230	+				+1.7
1,924,230	+				+0.4
1,924,230	+				+0.7
1,924,231	-				+0.3
1,924,231	-				-1.6
1,924,231	-				+1.7
1,924,231	-				-0.7
1,924,231	-				-1.0
1,924,231	-				-1.0
1,924,231	-				-0.2
1,924,231	-				-0.5
1,924,231	-				-0.2
1,924,232	+				-1.1
1,924,232	+				-0.0
1,924,232	+				-0.6
1,924,233	-				-1.0
1,924,233	-				+1.3
1,924,245	+				+0.7
1,924,245	+				+0.1
1,924,245	+				-0.6
1,924,246	-				+0.5
1,924,246	-				-0.5
1,924,246	-				+1.1
1,924,246	-				-0.5
1,924,246	-				-1.5
1,924,246	-				-1.1
1,924,246	-				-0.5
1,924,308	+		IAI47_09105	0.23	-1.1
1,924,308	+		IAI47_09105	0.23	+2.6
1,924,309	-		IAI47_09105	0.24	-1.1
1,924,309	-		IAI47_09105	0.24	-0.0
1,924,309	-		IAI47_09105	0.24	+0.4
1,924,361	+		IAI47_09105	0.53	+1.3
1,924,362	-		IAI47_09105	0.54	+1.0
1,924,362	-		IAI47_09105	0.54	+1.5
1,924,363	+		IAI47_09105	0.55	+2.9
1,924,363	+		IAI47_09105	0.55	+0.0
1,924,364	-		IAI47_09105	0.55	+0.7
1,924,426	+				+3.7
1,924,427	-				-1.7
1,924,434	+				+0.2
1,924,434	+				+1.1
1,924,434	+				-1.6
1,924,435	-				+1.4
1,924,435	-				-0.2
1,924,435	-				+0.5
1,924,437	+				-0.3
1,924,437	+				+0.0
1,924,437	+				-1.3
1,924,437	+				+0.6
1,924,437	+				+0.1
1,924,437	+				+1.5
1,924,438	-				+0.1
1,924,438	-				-0.6
1,924,438	-				-0.6
1,924,439	+				-0.3
1,924,439	+				+2.3
1,924,439	+				+0.5
1,924,439	+				-1.3
1,924,439	+				-0.5
1,924,440	-				+1.6
1,924,440	-				-0.2
1,924,440	-				+0.4
1,924,440	-				+1.1
1,924,440	-				-0.2
1,924,440	-				+0.1
1,924,460	+				-0.1
1,924,461	-				-1.4
1,924,544	+		IAI47_09110	0.32	+1.1
1,924,544	+		IAI47_09110	0.32	-0.3
1,924,545	-		IAI47_09110	0.32	+1.6
1,924,545	-		IAI47_09110	0.32	+0.3
1,924,587	+		IAI47_09110	0.46	+2.1
1,924,587	+		IAI47_09110	0.46	+0.2
1,924,588	-		IAI47_09110	0.46	+1.4
1,924,588	-		IAI47_09110	0.46	-0.1
1,924,606	+		IAI47_09110	0.52	-0.5
1,924,606	+		IAI47_09110	0.52	-0.9
1,924,606	+		IAI47_09110	0.52	+2.0
1,924,615	+		IAI47_09110	0.54	+1.4
1,924,615	+		IAI47_09110	0.54	+0.7
1,924,615	+		IAI47_09110	0.54	-0.7
1,924,616	-		IAI47_09110	0.55	+0.2
1,924,616	-		IAI47_09110	0.55	+1.9
1,924,616	-		IAI47_09110	0.55	-0.5
1,924,616	-		IAI47_09110	0.55	-0.5
1,924,616	-		IAI47_09110	0.55	+0.2
1,924,616	-		IAI47_09110	0.55	+0.4
1,924,623	+		IAI47_09110	0.57	-1.2
1,924,624	-		IAI47_09110	0.57	-0.0
1,924,624	-		IAI47_09110	0.57	+1.6
1,924,710	-		IAI47_09110	0.84	+1.5
1,924,710	-		IAI47_09110	0.84	+0.4
1,924,729	+				-2.2
1,924,729	+				+1.1
1,924,729	+				-1.2
1,924,729	+				+0.4
1,924,730	-				-0.5
1,924,733	-				-1.2
1,924,733	-				+1.0
1,924,733	-				+0.7
1,924,746	+				-2.6
1,924,753	+				+1.3
1,924,754	-				+1.9
1,924,759	+				-1.6
1,924,759	+				-0.5
1,924,759	+				+0.8
1,924,760	-				-0.6
1,924,760	-				+1.1
1,924,776	+				-1.1
1,924,777	-				-0.1
1,924,805	+				-0.1
1,924,805	+				+3.3
1,924,805	+				+0.1
1,924,805	+				+0.3
1,924,805	+				-1.2
1,924,806	-				+0.1
1,924,806	-				+0.7
1,924,819	+				-1.7
1,924,819	+				+2.6
1,924,820	-				+2.4
1,924,825	+				-0.7
1,924,825	+				-1.0
1,924,826	-				+0.0
1,924,826	-				+0.7
1,924,843	-				+0.8
1,924,854	-				+1.3
1,924,854	-				+0.1
1,924,881	+				-0.1
1,924,881	+				+0.4
1,924,881	+				-1.0
1,924,882	-				+0.8
1,924,882	-				-0.6
1,924,886	-				+0.2
1,924,915	+				+1.1
1,924,916	-				-1.9
1,925,040	-				-1.3
1,925,081	+				-1.2
1,925,098	+				-0.5
1,925,099	-				+0.5
1,925,099	-				+0.9
1,925,099	-				-0.1
1,925,121	-				-0.2
1,925,123	-				-0.3
1,925,143	+		IAI47_09115	0.13	+0.6
1,925,143	+		IAI47_09115	0.13	-1.3
1,925,143	+		IAI47_09115	0.13	-1.9
1,925,143	+		IAI47_09115	0.13	+0.5
1,925,144	-		IAI47_09115	0.13	-1.2
1,925,144	-		IAI47_09115	0.13	-1.1
1,925,144	-		IAI47_09115	0.13	-0.1
1,925,144	-		IAI47_09115	0.13	-1.0
1,925,150	+		IAI47_09115	0.16	-2.6
1,925,150	+		IAI47_09115	0.16	+0.5
1,925,151	-		IAI47_09115	0.16	-1.2
1,925,161	-		IAI47_09115	0.20	+2.0
1,925,161	-		IAI47_09115	0.20	+0.6
1,925,161	-		IAI47_09115	0.20	-0.5
1,925,161	-		IAI47_09115	0.20	+0.7
1,925,217	+		IAI47_09115	0.43	-1.5
1,925,223	-		IAI47_09115	0.46	+0.0
1,925,249	+		IAI47_09115	0.56	-0.0
1,925,250	-		IAI47_09115	0.57	-0.5
1,925,250	-		IAI47_09115	0.57	+1.2
1,925,250	-		IAI47_09115	0.57	-0.9
1,925,255	+		IAI47_09115	0.59	-0.2
1,925,256	-		IAI47_09115	0.59	+0.3
1,925,270	+		IAI47_09115	0.65	+0.2
1,925,281	+		IAI47_09115	0.70	+0.1
1,925,281	+		IAI47_09115	0.70	+0.9
1,925,282	-		IAI47_09115	0.70	-0.2
1,925,316	+		IAI47_09115	0.84	-0.4
1,925,317	-		IAI47_09115	0.84	+3.2
1,925,317	-		IAI47_09115	0.84	-0.9
1,925,317	-		IAI47_09115	0.84	-0.7
1,925,317	-		IAI47_09115	0.84	+0.8
1,925,326	+		IAI47_09115	0.88	-1.1
1,925,352	+				+1.4
1,925,352	+				+0.7
1,925,352	+				-0.4
1,925,353	-				+0.3
1,925,366	+				+0.7
1,925,388	+				+0.0
1,925,388	+				-1.3
1,925,389	-				+2.4
1,925,389	-				-0.6
1,925,389	-				+1.7
1,925,452	-				+2.7
1,925,454	+				+1.2
1,925,454	+				-0.3
1,925,454	+				+0.2
1,925,454	+				+0.0
1,925,454	+				+1.5
1,925,454	+				-0.8
1,925,454	+				+2.4
1,925,454	+				+0.0
1,925,455	-				+1.7
1,925,455	-				+0.3
1,925,455	-				-0.1
1,925,470	+				+0.1
1,925,470	+				+2.1
1,925,483	-				+0.1
1,925,486	-				+0.1
1,925,486	-				+0.2
1,925,500	+				-0.4
1,925,500	+				+1.7
1,925,501	-				-0.3
1,925,501	-				-0.7
1,925,506	+				-1.2
1,925,506	+				-1.8
1,925,506	+				+0.9
1,925,506	+				+2.1
1,925,507	-				+0.4
1,925,522	+				-0.1
1,925,522	+				+1.3
1,925,522	+				+0.5
1,925,523	-				+2.6
1,925,544	+				+1.3
1,925,545	-				+0.4
1,925,545	-				-1.1
1,925,568	+				-0.0
1,925,568	+				-0.8
1,925,568	+				+0.2
1,925,569	-				+0.5
1,925,569	-				-0.6
1,925,569	-				-0.3
1,925,569	-				-2.0
1,925,569	-				+0.7
1,925,614	-		IAI47_09120	0.19	-0.5
1,925,614	-		IAI47_09120	0.19	+1.7
1,925,673	+		IAI47_09120	0.51	-2.1
1,925,676	+		IAI47_09120	0.53	-1.3
1,925,676	+		IAI47_09120	0.53	+1.1
1,925,702	+		IAI47_09120	0.67	-1.0
1,925,702	+		IAI47_09120	0.67	-0.8
1,925,703	-		IAI47_09120	0.67	+0.8
1,925,703	-		IAI47_09120	0.67	+0.7
1,925,748	+				-1.4
1,925,748	+				+0.8
1,925,748	+				-2.2
1,925,755	+				+0.2
1,925,755	+				+0.6
1,925,755	+				-0.5
1,925,755	+				-2.1
1,925,755	+				-3.0
1,925,755	+				+2.2
1,925,756	-				-0.2