Strain Fitness in Pantoea sp. MT58 around IAI47_08570

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_08560 and IAI47_08565 overlap by 4 nucleotidesIAI47_08565 and IAI47_08570 overlap by 8 nucleotidesIAI47_08570 and IAI47_08575 overlap by 9 nucleotidesIAI47_08575 and IAI47_08580 are separated by 30 nucleotides IAI47_08560: IAI47_08560 - phage tail protein, at 1,810,394 to 1,811,626 _08560 IAI47_08565: IAI47_08565 - phage tail protein I, at 1,811,623 to 1,812,231 _08565 IAI47_08570: IAI47_08570 - baseplate J/gp47 family protein, at 1,812,224 to 1,812,670 _08570 IAI47_08575: IAI47_08575 - phage portal protein, at 1,812,662 to 1,813,558 _08575 IAI47_08580: IAI47_08580 - DUF1493 family protein, at 1,813,589 to 1,813,888 _08580 Position (kb) 1812 1813Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1811.244 kb on - strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.298 kb on + strand, within IAI47_08560at 1811.299 kb on - strand, within IAI47_08560at 1811.299 kb on - strand, within IAI47_08560at 1811.299 kb on - strand, within IAI47_08560at 1811.299 kb on - strand, within IAI47_08560at 1811.299 kb on - strand, within IAI47_08560at 1811.315 kb on - strand, within IAI47_08560at 1811.315 kb on - strand, within IAI47_08560at 1811.315 kb on - strand, within IAI47_08560at 1811.315 kb on - strand, within IAI47_08560at 1811.346 kb on + strand, within IAI47_08560at 1811.347 kb on - strand, within IAI47_08560at 1811.347 kb on - strand, within IAI47_08560at 1811.347 kb on - strand, within IAI47_08560at 1811.582 kb on - strandat 1811.582 kb on - strandat 1811.582 kb on - strandat 1811.649 kb on + strandat 1811.649 kb on + strandat 1811.650 kb on - strandat 1811.650 kb on - strandat 1811.650 kb on - strandat 1811.650 kb on - strandat 1811.694 kb on + strand, within IAI47_08565at 1811.694 kb on + strand, within IAI47_08565at 1811.695 kb on - strand, within IAI47_08565at 1811.695 kb on - strand, within IAI47_08565at 1811.707 kb on - strand, within IAI47_08565at 1811.708 kb on + strand, within IAI47_08565at 1811.709 kb on - strand, within IAI47_08565at 1811.709 kb on - strand, within IAI47_08565at 1811.709 kb on - strand, within IAI47_08565at 1811.709 kb on - strand, within IAI47_08565at 1811.714 kb on + strand, within IAI47_08565at 1811.739 kb on - strand, within IAI47_08565at 1811.739 kb on - strand, within IAI47_08565at 1811.785 kb on - strand, within IAI47_08565at 1811.785 kb on - strand, within IAI47_08565at 1811.785 kb on - strand, within IAI47_08565at 1811.847 kb on + strand, within IAI47_08565at 1811.849 kb on + strand, within IAI47_08565at 1811.849 kb on + strand, within IAI47_08565at 1811.849 kb on + strand, within IAI47_08565at 1811.849 kb on + strand, within IAI47_08565at 1811.949 kb on - strand, within IAI47_08565at 1811.949 kb on - strand, within IAI47_08565at 1811.949 kb on - strand, within IAI47_08565at 1811.974 kb on + strand, within IAI47_08565at 1811.975 kb on - strand, within IAI47_08565at 1811.976 kb on + strand, within IAI47_08565at 1811.977 kb on - strand, within IAI47_08565at 1812.008 kb on + strand, within IAI47_08565at 1812.008 kb on + strand, within IAI47_08565at 1812.009 kb on - strand, within IAI47_08565at 1812.009 kb on - strand, within IAI47_08565at 1812.009 kb on - strand, within IAI47_08565at 1812.092 kb on + strand, within IAI47_08565at 1812.092 kb on + strand, within IAI47_08565at 1812.130 kb on + strand, within IAI47_08565at 1812.130 kb on + strand, within IAI47_08565at 1812.157 kb on - strand, within IAI47_08565at 1812.268 kb on - strandat 1812.313 kb on + strand, within IAI47_08570at 1812.354 kb on + strand, within IAI47_08570at 1812.355 kb on - strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.468 kb on + strand, within IAI47_08570at 1812.469 kb on - strand, within IAI47_08570at 1812.469 kb on - strand, within IAI47_08570at 1812.469 kb on - strand, within IAI47_08570at 1812.469 kb on - strand, within IAI47_08570at 1812.469 kb on - strand, within IAI47_08570at 1812.489 kb on + strand, within IAI47_08570at 1812.489 kb on + strand, within IAI47_08570at 1812.490 kb on - strand, within IAI47_08570at 1812.490 kb on - strand, within IAI47_08570at 1812.493 kb on + strand, within IAI47_08570at 1812.493 kb on + strand, within IAI47_08570at 1812.493 kb on + strand, within IAI47_08570at 1812.493 kb on + strand, within IAI47_08570at 1812.493 kb on + strand, within IAI47_08570at 1812.494 kb on - strand, within IAI47_08570at 1812.494 kb on - strand, within IAI47_08570at 1812.628 kb on + strandat 1812.629 kb on - strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.732 kb on + strandat 1812.733 kb on - strandat 1812.753 kb on - strand, within IAI47_08575at 1812.756 kb on + strand, within IAI47_08575at 1812.757 kb on - strand, within IAI47_08575at 1812.836 kb on + strand, within IAI47_08575at 1812.874 kb on + strand, within IAI47_08575at 1812.874 kb on + strand, within IAI47_08575at 1812.875 kb on - strand, within IAI47_08575at 1812.951 kb on - strand, within IAI47_08575at 1813.069 kb on + strand, within IAI47_08575at 1813.070 kb on - strand, within IAI47_08575at 1813.115 kb on + strand, within IAI47_08575at 1813.116 kb on - strand, within IAI47_08575at 1813.116 kb on - strand, within IAI47_08575at 1813.116 kb on - strand, within IAI47_08575at 1813.118 kb on + strand, within IAI47_08575at 1813.118 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.151 kb on + strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.152 kb on - strand, within IAI47_08575at 1813.153 kb on + strand, within IAI47_08575at 1813.153 kb on + strand, within IAI47_08575at 1813.153 kb on + strand, within IAI47_08575at 1813.153 kb on + strand, within IAI47_08575at 1813.154 kb on - strand, within IAI47_08575at 1813.154 kb on - strand, within IAI47_08575at 1813.154 kb on - strand, within IAI47_08575at 1813.204 kb on + strand, within IAI47_08575at 1813.205 kb on - strand, within IAI47_08575at 1813.246 kb on + strand, within IAI47_08575at 1813.247 kb on - strand, within IAI47_08575at 1813.247 kb on - strand, within IAI47_08575at 1813.250 kb on + strand, within IAI47_08575at 1813.251 kb on - strand, within IAI47_08575at 1813.325 kb on - strand, within IAI47_08575at 1813.356 kb on + strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.440 kb on - strand, within IAI47_08575at 1813.453 kb on + strand, within IAI47_08575at 1813.454 kb on - strand, within IAI47_08575at 1813.496 kb on - strandat 1813.532 kb on + strandat 1813.533 kb on - strandat 1813.533 kb on - strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.564 kb on + strandat 1813.565 kb on - strandat 1813.586 kb on + strandat 1813.587 kb on - strandat 1813.587 kb on - strandat 1813.590 kb on + strandat 1813.590 kb on + strandat 1813.590 kb on + strandat 1813.590 kb on + strandat 1813.590 kb on + strandat 1813.590 kb on + strandat 1813.591 kb on - strandat 1813.591 kb on - strandat 1813.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,811,244 - IAI47_08560 0.69 -1.3
1,811,298 + IAI47_08560 0.73 -0.5
1,811,298 + IAI47_08560 0.73 +0.4
1,811,298 + IAI47_08560 0.73 -0.3
1,811,298 + IAI47_08560 0.73 +2.1
1,811,298 + IAI47_08560 0.73 -2.4
1,811,298 + IAI47_08560 0.73 -0.3
1,811,298 + IAI47_08560 0.73 -2.5
1,811,299 - IAI47_08560 0.73 +1.2
1,811,299 - IAI47_08560 0.73 -1.5
1,811,299 - IAI47_08560 0.73 -2.4
1,811,299 - IAI47_08560 0.73 +0.7
1,811,299 - IAI47_08560 0.73 -1.3
1,811,315 - IAI47_08560 0.75 -0.5
1,811,315 - IAI47_08560 0.75 +0.7
1,811,315 - IAI47_08560 0.75 -0.2
1,811,315 - IAI47_08560 0.75 +1.2
1,811,346 + IAI47_08560 0.77 -0.5
1,811,347 - IAI47_08560 0.77 +0.1
1,811,347 - IAI47_08560 0.77 -0.3
1,811,347 - IAI47_08560 0.77 -1.2
1,811,582 - -0.1
1,811,582 - +0.7
1,811,582 - +1.4
1,811,649 + +2.3
1,811,649 + -0.9
1,811,650 - +1.2
1,811,650 - -0.2
1,811,650 - +0.4
1,811,650 - -0.5
1,811,694 + IAI47_08565 0.12 +0.0
1,811,694 + IAI47_08565 0.12 +0.8
1,811,695 - IAI47_08565 0.12 +1.0
1,811,695 - IAI47_08565 0.12 -0.1
1,811,707 - IAI47_08565 0.14 +1.7
1,811,708 + IAI47_08565 0.14 +1.1
1,811,709 - IAI47_08565 0.14 -0.5
1,811,709 - IAI47_08565 0.14 -0.1
1,811,709 - IAI47_08565 0.14 -1.4
1,811,709 - IAI47_08565 0.14 -0.5
1,811,714 + IAI47_08565 0.15 +0.4
1,811,739 - IAI47_08565 0.19 -1.4
1,811,739 - IAI47_08565 0.19 +0.5
1,811,785 - IAI47_08565 0.27 +1.7
1,811,785 - IAI47_08565 0.27 -0.9
1,811,785 - IAI47_08565 0.27 -1.2
1,811,847 + IAI47_08565 0.37 +2.0
1,811,849 + IAI47_08565 0.37 +1.6
1,811,849 + IAI47_08565 0.37 -0.9
1,811,849 + IAI47_08565 0.37 +1.3
1,811,849 + IAI47_08565 0.37 -0.8
1,811,949 - IAI47_08565 0.54 +3.8
1,811,949 - IAI47_08565 0.54 +2.4
1,811,949 - IAI47_08565 0.54 -1.2
1,811,974 + IAI47_08565 0.58 -0.0
1,811,975 - IAI47_08565 0.58 +0.4
1,811,976 + IAI47_08565 0.58 +1.2
1,811,977 - IAI47_08565 0.58 -0.2
1,812,008 + IAI47_08565 0.63 -1.4
1,812,008 + IAI47_08565 0.63 +0.4
1,812,009 - IAI47_08565 0.63 -0.9
1,812,009 - IAI47_08565 0.63 +0.7
1,812,009 - IAI47_08565 0.63 +0.5
1,812,092 + IAI47_08565 0.77 -1.0
1,812,092 + IAI47_08565 0.77 -0.6
1,812,130 + IAI47_08565 0.83 -0.5
1,812,130 + IAI47_08565 0.83 -1.0
1,812,157 - IAI47_08565 0.88 -1.6
1,812,268 - +1.8
1,812,313 + IAI47_08570 0.20 +1.8
1,812,354 + IAI47_08570 0.29 -0.6
1,812,355 - IAI47_08570 0.29 +1.2
1,812,468 + IAI47_08570 0.55 -1.1
1,812,468 + IAI47_08570 0.55 -1.9
1,812,468 + IAI47_08570 0.55 +1.1
1,812,468 + IAI47_08570 0.55 +1.0
1,812,468 + IAI47_08570 0.55 +0.5
1,812,468 + IAI47_08570 0.55 -0.3
1,812,469 - IAI47_08570 0.55 -1.9
1,812,469 - IAI47_08570 0.55 -0.8
1,812,469 - IAI47_08570 0.55 +0.7
1,812,469 - IAI47_08570 0.55 +0.1
1,812,469 - IAI47_08570 0.55 +1.3
1,812,489 + IAI47_08570 0.59 +2.0
1,812,489 + IAI47_08570 0.59 +2.4
1,812,490 - IAI47_08570 0.60 +0.9
1,812,490 - IAI47_08570 0.60 +1.6
1,812,493 + IAI47_08570 0.60 +0.0
1,812,493 + IAI47_08570 0.60 -1.1
1,812,493 + IAI47_08570 0.60 +0.5
1,812,493 + IAI47_08570 0.60 +1.3
1,812,493 + IAI47_08570 0.60 +1.3
1,812,494 - IAI47_08570 0.60 +1.2
1,812,494 - IAI47_08570 0.60 +0.7
1,812,628 + +1.4
1,812,629 - +3.0
1,812,732 + -0.3
1,812,732 + +1.7
1,812,732 + +0.5
1,812,732 + -0.2
1,812,732 + +0.7
1,812,732 + +1.4
1,812,732 + +1.1
1,812,733 - +3.4
1,812,753 - IAI47_08575 0.10 +0.0
1,812,756 + IAI47_08575 0.10 +1.7
1,812,757 - IAI47_08575 0.11 +0.5
1,812,836 + IAI47_08575 0.19 +2.0
1,812,874 + IAI47_08575 0.24 +5.1
1,812,874 + IAI47_08575 0.24 +0.7
1,812,875 - IAI47_08575 0.24 +2.2
1,812,951 - IAI47_08575 0.32 +0.4
1,813,069 + IAI47_08575 0.45 +0.2
1,813,070 - IAI47_08575 0.45 -0.1
1,813,115 + IAI47_08575 0.51 -0.2
1,813,116 - IAI47_08575 0.51 -0.7
1,813,116 - IAI47_08575 0.51 -0.7
1,813,116 - IAI47_08575 0.51 -0.5
1,813,118 + IAI47_08575 0.51 +1.5
1,813,118 + IAI47_08575 0.51 +0.9
1,813,151 + IAI47_08575 0.55 -2.1
1,813,151 + IAI47_08575 0.55 +0.1
1,813,151 + IAI47_08575 0.55 -1.1
1,813,151 + IAI47_08575 0.55 +1.7
1,813,151 + IAI47_08575 0.55 -1.1
1,813,151 + IAI47_08575 0.55 +1.7
1,813,151 + IAI47_08575 0.55 -0.3
1,813,151 + IAI47_08575 0.55 +0.1
1,813,151 + IAI47_08575 0.55 +1.2
1,813,151 + IAI47_08575 0.55 -0.7
1,813,151 + IAI47_08575 0.55 +0.5
1,813,152 - IAI47_08575 0.55 -0.4
1,813,152 - IAI47_08575 0.55 +0.5
1,813,152 - IAI47_08575 0.55 -0.5
1,813,152 - IAI47_08575 0.55 +0.1
1,813,152 - IAI47_08575 0.55 +0.3
1,813,152 - IAI47_08575 0.55 -0.2
1,813,152 - IAI47_08575 0.55 -0.6
1,813,152 - IAI47_08575 0.55 -1.2
1,813,153 + IAI47_08575 0.55 +1.4
1,813,153 + IAI47_08575 0.55 -1.3
1,813,153 + IAI47_08575 0.55 -0.8
1,813,153 + IAI47_08575 0.55 +0.2
1,813,154 - IAI47_08575 0.55 +0.1
1,813,154 - IAI47_08575 0.55 +1.1
1,813,154 - IAI47_08575 0.55 +0.1
1,813,204 + IAI47_08575 0.60 -0.5
1,813,205 - IAI47_08575 0.61 -0.2
1,813,246 + IAI47_08575 0.65 -2.0
1,813,247 - IAI47_08575 0.65 +1.2
1,813,247 - IAI47_08575 0.65 +0.7
1,813,250 + IAI47_08575 0.66 +0.9
1,813,251 - IAI47_08575 0.66 -1.4
1,813,325 - IAI47_08575 0.74 +0.5
1,813,356 + IAI47_08575 0.77 -1.5
1,813,440 - IAI47_08575 0.87 +0.2
1,813,440 - IAI47_08575 0.87 +0.2
1,813,440 - IAI47_08575 0.87 -0.3
1,813,440 - IAI47_08575 0.87 +0.1
1,813,440 - IAI47_08575 0.87 -1.0
1,813,440 - IAI47_08575 0.87 +2.0
1,813,453 + IAI47_08575 0.88 -0.5
1,813,454 - IAI47_08575 0.88 +0.1
1,813,496 - +0.7
1,813,532 + +0.1
1,813,533 - +0.4
1,813,533 - +1.8
1,813,564 + +0.5
1,813,564 + +0.9
1,813,564 + +2.0
1,813,564 + -0.9
1,813,564 + +0.6
1,813,564 + +1.1
1,813,564 + +0.2
1,813,564 + +0.5
1,813,565 - +0.8
1,813,586 + -1.3
1,813,587 - +1.6
1,813,587 - +0.6
1,813,590 + +1.2
1,813,590 + +0.9
1,813,590 + -0.6
1,813,590 + +1.2
1,813,590 + +0.6
1,813,590 + +1.8
1,813,591 - +0.1
1,813,591 - -0.3
1,813,591 - +0.8

Or see this region's nucleotide sequence