Strain Fitness in Pantoea sp. MT58 around IAI47_05565

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,170,424	+		IAI47_05555	0.90	-0.3
1,170,424	+		IAI47_05555	0.90	-0.7
1,170,425	-		IAI47_05555	0.90	-0.2
1,170,425	-		IAI47_05555	0.90	-0.6
1,170,425	-		IAI47_05555	0.90	-0.0
1,170,445	+				-2.0
1,170,445	+				+0.9
1,170,453	+				+0.4
1,170,453	+				-0.2
1,170,454	-				+1.1
1,170,454	-				-0.5
1,170,454	-				-0.2
1,170,532	-				-0.5
1,170,690	+				-1.1
1,170,691	-				+1.2
1,170,718	+				-0.3
1,170,719	-				-0.7
1,170,719	-				-1.0
1,170,719	-				+3.0
1,170,724	+				+1.6
1,170,725	-				-0.9
1,170,725	-				+0.7
1,170,725	-				-1.9
1,170,725	-				-2.4
1,170,766	+		IAI47_05560	0.11	+1.1
1,170,767	-		IAI47_05560	0.11	-0.9
1,170,774	+		IAI47_05560	0.12	+1.7
1,170,774	+		IAI47_05560	0.12	+1.4
1,170,774	+		IAI47_05560	0.12	-0.9
1,170,774	+		IAI47_05560	0.12	-0.1
1,170,774	+		IAI47_05560	0.12	+1.8
1,170,774	+		IAI47_05560	0.12	-2.4
1,170,775	-		IAI47_05560	0.12	+0.9
1,170,775	-		IAI47_05560	0.12	+0.9
1,170,775	-		IAI47_05560	0.12	+0.3
1,170,775	-		IAI47_05560	0.12	+1.5
1,170,784	+		IAI47_05560	0.13	-1.9
1,170,785	-		IAI47_05560	0.13	-1.0
1,170,828	+				-1.4
1,170,828	+		IAI47_05560	0.19	+1.0
1,170,829	-		IAI47_05560	0.19	-0.1
1,170,829	-		IAI47_05560	0.19	-0.6
1,170,829	-		IAI47_05560	0.19	+0.0
1,170,887	-		IAI47_05560	0.27	-1.4
1,170,887	-		IAI47_05560	0.27	-0.9
1,170,903	+		IAI47_05560	0.29	-2.6
1,170,903	+		IAI47_05560	0.29	-0.3
1,170,903	+		IAI47_05560	0.29	-0.1
1,170,903	+		IAI47_05560	0.29	+0.3
1,170,903	+		IAI47_05560	0.29	-1.2
1,170,904	-		IAI47_05560	0.29	-1.1
1,170,904	-		IAI47_05560	0.29	+1.3
1,170,920	-		IAI47_05560	0.32	+1.4
1,170,921	+		IAI47_05560	0.32	+1.2
1,170,921	+		IAI47_05560	0.32	+2.4
1,170,921	+		IAI47_05560	0.32	+0.1
1,170,955	-		IAI47_05560	0.36	+0.8
1,170,955	-		IAI47_05560	0.36	-0.4
1,170,955	-		IAI47_05560	0.36	-1.0
1,170,957	+		IAI47_05560	0.37	+0.3
1,170,957	+		IAI47_05560	0.37	+0.6
1,170,958	-		IAI47_05560	0.37	+0.9
1,170,958	-		IAI47_05560	0.37	+0.7
1,170,958	-		IAI47_05560	0.37	-1.7
1,170,958	-		IAI47_05560	0.37	-1.2
1,170,961	+		IAI47_05560	0.37	+0.3
1,170,961	+		IAI47_05560	0.37	+0.3
1,170,962	-		IAI47_05560	0.37	-0.5
1,170,962	-		IAI47_05560	0.37	+0.3
1,170,962	-		IAI47_05560	0.37	-1.6
1,170,998	-		IAI47_05560	0.42	-2.0
1,171,033	+		IAI47_05560	0.47	+2.4
1,171,033	+		IAI47_05560	0.47	-0.1
1,171,033	+		IAI47_05560	0.47	+3.7
1,171,034	-		IAI47_05560	0.47	+0.1
1,171,110	+		IAI47_05560	0.58	-0.8
1,171,110	+		IAI47_05560	0.58	-0.8
1,171,125	+		IAI47_05560	0.60	+1.1
1,171,125	+		IAI47_05560	0.60	-0.8
1,171,154	+		IAI47_05560	0.64	-0.6
1,171,154	+		IAI47_05560	0.64	-1.7
1,171,154	+		IAI47_05560	0.64	-0.8
1,171,154	+		IAI47_05560	0.64	+0.7
1,171,155	-		IAI47_05560	0.64	-0.9
1,171,155	-		IAI47_05560	0.64	-0.6
1,171,155	-		IAI47_05560	0.64	+0.5
1,171,155	-		IAI47_05560	0.64	+1.1
1,171,177	+		IAI47_05560	0.67	-2.1
1,171,178	-		IAI47_05560	0.67	+3.2
1,171,180	+		IAI47_05560	0.67	-0.1
1,171,217	-		IAI47_05560	0.72	+2.4
1,171,217	-		IAI47_05560	0.72	-0.8
1,171,234	+		IAI47_05560	0.75	+1.0
1,171,234	+		IAI47_05560	0.75	+0.1
1,171,234	+		IAI47_05560	0.75	+2.7
1,171,234	+		IAI47_05560	0.75	-1.8
1,171,234	+		IAI47_05560	0.75	+0.7
1,171,234	+		IAI47_05560	0.75	+0.1
1,171,234	+		IAI47_05560	0.75	+0.2
1,171,234	+		IAI47_05560	0.75	-1.8
1,171,235	-		IAI47_05560	0.75	+2.7
1,171,235	-		IAI47_05560	0.75	+2.2
1,171,235	-		IAI47_05560	0.75	-0.4
1,171,235	-		IAI47_05560	0.75	+1.7
1,171,235	-		IAI47_05560	0.75	+0.7
1,171,235	-		IAI47_05560	0.75	-0.8
1,171,252	+		IAI47_05560	0.77	-0.4
1,171,253	-		IAI47_05560	0.77	-0.2
1,171,253	-		IAI47_05560	0.77	-2.2
1,171,255	+		IAI47_05560	0.78	+2.4
1,171,255	+		IAI47_05560	0.78	-0.8
1,171,255	+		IAI47_05560	0.78	-0.5
1,171,255	+		IAI47_05560	0.78	-0.4
1,171,255	+		IAI47_05560	0.78	-3.6
1,171,255	+		IAI47_05560	0.78	+0.5
1,171,255	+		IAI47_05560	0.78	+0.4
1,171,256	-		IAI47_05560	0.78	+1.5
1,171,256	-		IAI47_05560	0.78	+2.7
1,171,256	-		IAI47_05560	0.78	+0.2
1,171,256	-		IAI47_05560	0.78	-0.1
1,171,256	-		IAI47_05560	0.78	+1.6
1,171,256	-		IAI47_05560	0.78	-2.3
1,171,256	-		IAI47_05560	0.78	-1.6
1,171,256	-		IAI47_05560	0.78	+0.8
1,171,296	+		IAI47_05560	0.83	-1.2
1,171,297	-		IAI47_05560	0.83	-1.7
1,171,304	+		IAI47_05560	0.84	-1.5
1,171,304	+		IAI47_05560	0.84	-0.2
1,171,304	+		IAI47_05560	0.84	+0.6
1,171,304	+		IAI47_05560	0.84	+0.4
1,171,305	-		IAI47_05560	0.84	-1.6
1,171,305	-		IAI47_05560	0.84	-0.3
1,171,305	-		IAI47_05560	0.84	-0.1
1,171,405	+				+1.7
1,171,405	+				-1.8
1,171,458	+				-0.8
1,171,554	+				-0.8
1,171,554	+				-0.3
1,171,555	-				+0.4
1,171,555	-				-0.1
1,171,686	+		IAI47_05565	0.16	+1.7
1,171,687	-		IAI47_05565	0.16	-1.6
1,171,687	-		IAI47_05565	0.16	+0.2
1,171,698	+		IAI47_05565	0.17	+0.4
1,171,698	+		IAI47_05565	0.17	+1.4
1,171,699	-		IAI47_05565	0.17	+2.3
1,171,699	-		IAI47_05565	0.17	-1.7
1,171,721	-		IAI47_05565	0.18	-1.3
1,171,721	-		IAI47_05565	0.18	+0.4
1,171,778	+		IAI47_05565	0.22	+1.3
1,171,778	+		IAI47_05565	0.22	+0.6
1,171,779	-		IAI47_05565	0.22	+0.8
1,171,825	-		IAI47_05565	0.24	-0.5
1,171,825	-		IAI47_05565	0.24	-1.4
1,171,825	-		IAI47_05565	0.24	+0.6
1,171,825	-		IAI47_05565	0.24	+1.0
1,171,825	-		IAI47_05565	0.24	-1.8
1,171,826	+		IAI47_05565	0.24	+0.6
1,171,826	+		IAI47_05565	0.24	-1.3
1,171,826	+		IAI47_05565	0.24	-0.8
1,171,826	+		IAI47_05565	0.24	-0.8
1,171,826	+		IAI47_05565	0.24	-1.3
1,171,827	-		IAI47_05565	0.24	-2.0
1,171,851	+		IAI47_05565	0.26	+0.7
1,171,851	+		IAI47_05565	0.26	+0.4
1,171,852	-		IAI47_05565	0.26	+0.6
1,171,864	+		IAI47_05565	0.27	-0.1
1,171,865	-		IAI47_05565	0.27	-0.8
1,171,865	-		IAI47_05565	0.27	-2.1
1,171,865	-		IAI47_05565	0.27	-0.9
1,171,865	-		IAI47_05565	0.27	+1.9
1,171,892	+		IAI47_05565	0.28	-1.8
1,171,892	+		IAI47_05565	0.28	-0.6
1,171,892	+		IAI47_05565	0.28	-0.6
1,171,892	+		IAI47_05565	0.28	-2.5
1,171,892	+		IAI47_05565	0.28	-0.1
1,171,893	-		IAI47_05565	0.28	-1.8
1,171,901	+		IAI47_05565	0.29	-0.9
1,171,902	-		IAI47_05565	0.29	+0.1
1,171,902	-		IAI47_05565	0.29	+0.1
1,171,902	-		IAI47_05565	0.29	+1.6
1,171,902	-		IAI47_05565	0.29	-0.8
1,171,936	-		IAI47_05565	0.31	+0.1
1,171,953	+		IAI47_05565	0.32	-0.8
1,171,965	+		IAI47_05565	0.33	-1.2
1,171,965	+		IAI47_05565	0.33	+1.2
1,171,965	+		IAI47_05565	0.33	-0.4
1,171,965	+		IAI47_05565	0.33	+1.1
1,171,965	+		IAI47_05565	0.33	-0.9
1,171,965	+		IAI47_05565	0.33	+0.9
1,171,966	-		IAI47_05565	0.33	-1.5
1,171,966	-		IAI47_05565	0.33	-0.5
1,171,999	+		IAI47_05565	0.35	-0.3
1,171,999	+		IAI47_05565	0.35	+1.5
1,172,004	+		IAI47_05565	0.35	+1.5
1,172,086	-		IAI47_05565	0.40	+1.9
1,172,130	+		IAI47_05565	0.42	+1.3
1,172,130	+		IAI47_05565	0.42	-2.2
1,172,131	-		IAI47_05565	0.42	+1.1
1,172,147	+		IAI47_05565	0.43	+0.8
1,172,148	-		IAI47_05565	0.43	-2.3
1,172,150	+		IAI47_05565	0.44	-1.6
1,172,151	-		IAI47_05565	0.44	-2.3
1,172,151	-		IAI47_05565	0.44	+0.8
1,172,215	-		IAI47_05565	0.47	+1.3
1,172,220	+		IAI47_05565	0.48	+0.4
1,172,221	-		IAI47_05565	0.48	+2.8
1,172,221	-		IAI47_05565	0.48	-1.8
1,172,223	+		IAI47_05565	0.48	+0.2
1,172,247	+		IAI47_05565	0.49	-0.5
1,172,247	+		IAI47_05565	0.49	-1.6
1,172,247	+		IAI47_05565	0.49	-0.1
1,172,248	-		IAI47_05565	0.49	-1.1
1,172,248	-		IAI47_05565	0.49	+1.6
1,172,248	-		IAI47_05565	0.49	+0.3
1,172,250	+		IAI47_05565	0.49	+1.8
1,172,251	-		IAI47_05565	0.50	-0.2
1,172,251	-		IAI47_05565	0.50	-2.9
1,172,259	+		IAI47_05565	0.50	-1.8
1,172,260	-		IAI47_05565	0.50	-1.1
1,172,313	+		IAI47_05565	0.53	-1.3
1,172,313	+		IAI47_05565	0.53	-0.8
1,172,313	+		IAI47_05565	0.53	-0.3
1,172,313	+		IAI47_05565	0.53	-0.8
1,172,313	+		IAI47_05565	0.53	-0.6
1,172,313	+		IAI47_05565	0.53	-1.5
1,172,313	+		IAI47_05565	0.53	+1.3
1,172,314	-		IAI47_05565	0.53	-0.4
1,172,314	-		IAI47_05565	0.53	-1.3
1,172,314	-		IAI47_05565	0.53	-0.0
1,172,314	-		IAI47_05565	0.53	-0.4
1,172,315	+		IAI47_05565	0.53	+1.9
1,172,315	+		IAI47_05565	0.53	+1.4
1,172,315	+		IAI47_05565	0.53	+0.3
1,172,315	+		IAI47_05565	0.53	-1.9
1,172,315	+		IAI47_05565	0.53	-2.2
1,172,315	+		IAI47_05565	0.53	-1.4
1,172,315	+		IAI47_05565	0.53	-0.6
1,172,315	+		IAI47_05565	0.53	-0.8
1,172,315	+		IAI47_05565	0.53	-0.0
1,172,315	+		IAI47_05565	0.53	-3.0
1,172,315	+		IAI47_05565	0.53	-1.6
1,172,315	+		IAI47_05565	0.53	-0.6
1,172,315	+		IAI47_05565	0.53	+2.7
1,172,315	+		IAI47_05565	0.53	+0.2
1,172,315	+		IAI47_05565	0.53	+0.2
1,172,316	-		IAI47_05565	0.53	-0.6
1,172,316	-		IAI47_05565	0.53	+1.0
1,172,316	-		IAI47_05565	0.53	+1.1
1,172,316	-		IAI47_05565	0.53	-1.1
1,172,316	-		IAI47_05565	0.53	-0.8
1,172,316	-		IAI47_05565	0.53	+0.3
1,172,319	+		IAI47_05565	0.54	-0.2
1,172,319	+		IAI47_05565	0.54	-0.4
1,172,319	+		IAI47_05565	0.54	-0.1
1,172,320	-		IAI47_05565	0.54	-0.8
1,172,320	-		IAI47_05565	0.54	-1.3
1,172,320	-		IAI47_05565	0.54	+0.1
1,172,320	-		IAI47_05565	0.54	-0.5
1,172,320	-		IAI47_05565	0.54	-0.2
1,172,320	-		IAI47_05565	0.54	-0.1
1,172,320	-		IAI47_05565	0.54	-1.1
1,172,320	-		IAI47_05565	0.54	+1.5
1,172,358	+		IAI47_05565	0.56	-0.4
1,172,358	+		IAI47_05565	0.56	-0.6
1,172,358	+		IAI47_05565	0.56	-0.6
1,172,401	-		IAI47_05565	0.58	+1.1
1,172,401	-		IAI47_05565	0.58	-0.3
1,172,412	+		IAI47_05565	0.59	-1.4
1,172,413	-		IAI47_05565	0.59	-1.1
1,172,413	-		IAI47_05565	0.59	-0.1
1,172,413	-		IAI47_05565	0.59	+0.0
1,172,413	-		IAI47_05565	0.59	-0.6
1,172,413	-		IAI47_05565	0.59	+0.8
1,172,413	-		IAI47_05565	0.59	+2.3
1,172,413	-		IAI47_05565	0.59	+0.2
1,172,413	-		IAI47_05565	0.59	-1.5
1,172,502	+		IAI47_05565	0.64	+1.9
1,172,503	-		IAI47_05565	0.64	-2.5
1,172,503	-		IAI47_05565	0.64	-0.9
1,172,503	-		IAI47_05565	0.64	+1.1
1,172,503	-		IAI47_05565	0.64	-0.1
1,172,542	-		IAI47_05565	0.67	+0.0
1,172,718	+		IAI47_05565	0.77	-1.0
1,172,719	-		IAI47_05565	0.77	-1.2
1,172,754	+		IAI47_05565	0.79	-0.9
1,172,754	+		IAI47_05565	0.79	+1.4
1,172,755	-		IAI47_05565	0.79	+0.4
1,172,755	-		IAI47_05565	0.79	+2.5
1,172,788	-		IAI47_05565	0.81	+1.1
1,172,925	+		IAI47_05565	0.89	-1.6
1,172,926	-		IAI47_05565	0.90	-2.2
1,172,927	-		IAI47_05565	0.90	-1.5
1,173,079	+				-2.0
1,173,079	+				-1.1
1,173,080	-				+0.6
1,173,080	-				+1.6
1,173,133	+				-1.6
1,173,133	+				-2.1
1,173,133	+				-1.1
1,173,133	+				-0.5
1,173,133	+				+0.5
1,173,133	+				+1.1
1,173,134	-				-0.8
1,173,134	-				-1.5
1,173,162	-				-0.1
1,173,189	+				-1.1
1,173,189	+				-2.1
1,173,189	+				+0.9
1,173,293	+				+1.3
1,173,293	+				-0.2
1,173,293	+				+2.6
1,173,294	-				-0.8
1,173,294	-				+0.9
1,173,319	-				+2.2
1,173,376	+				-2.0
1,173,376	+				+1.5
1,173,377	-				+0.3
1,173,377	-				+4.7
1,173,386	+				-0.3
1,173,387	-				-0.1
1,173,387	-				+1.4
1,173,391	+				-1.3
1,173,391	+				-2.5
1,173,392	-				-0.5
1,173,454	+		IAI47_05570	0.19	-0.9
1,173,533	+		IAI47_05570	0.34	-1.2
1,173,534	-		IAI47_05570	0.34	+1.2
1,173,611	+		IAI47_05570	0.49	-1.2
1,173,633	+		IAI47_05570	0.53	+1.0
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