Strain Fitness in Pantoea sp. MT58 around IAI47_01615

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01605 and IAI47_01610 overlap by 4 nucleotidesIAI47_01610 and IAI47_01615 overlap by 4 nucleotidesIAI47_01615 and IAI47_01620 are separated by 207 nucleotides IAI47_01605: IAI47_01605 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 348,554 to 349,627 _01605 IAI47_01610: IAI47_01610 - glycerophosphodiester phosphodiesterase, at 349,624 to 350,367 _01610 IAI47_01615: IAI47_01615 - DUF2756 domain-containing protein, at 350,364 to 350,645 _01615 IAI47_01620: IAI47_01620 - gamma-glutamyltransferase, at 350,853 to 352,604 _01620 Position (kb) 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 349.405 kb on + strand, within IAI47_01605at 349.405 kb on + strand, within IAI47_01605at 349.405 kb on + strand, within IAI47_01605at 349.406 kb on - strand, within IAI47_01605at 349.406 kb on - strand, within IAI47_01605at 349.406 kb on - strand, within IAI47_01605at 349.406 kb on - strand, within IAI47_01605at 349.417 kb on + strand, within IAI47_01605at 349.418 kb on - strand, within IAI47_01605at 349.453 kb on + strand, within IAI47_01605at 349.453 kb on + strand, within IAI47_01605at 349.454 kb on - strand, within IAI47_01605at 349.454 kb on - strand, within IAI47_01605at 349.477 kb on + strand, within IAI47_01605at 349.478 kb on - strand, within IAI47_01605at 349.518 kb on + strand, within IAI47_01605at 349.518 kb on + strand, within IAI47_01605at 349.519 kb on - strand, within IAI47_01605at 349.519 kb on - strand, within IAI47_01605at 349.519 kb on - strand, within IAI47_01605at 349.525 kb on - strandat 349.525 kb on - strandat 349.555 kb on + strandat 349.555 kb on + strandat 349.555 kb on + strandat 349.555 kb on + strandat 349.555 kb on + strandat 349.556 kb on - strandat 349.556 kb on - strandat 349.556 kb on - strandat 349.556 kb on - strandat 349.556 kb on - strandat 349.587 kb on + strandat 349.587 kb on + strandat 349.588 kb on - strandat 349.645 kb on + strandat 349.645 kb on + strandat 349.646 kb on - strandat 349.646 kb on - strandat 349.696 kb on - strandat 349.727 kb on - strand, within IAI47_01610at 349.727 kb on - strand, within IAI47_01610at 349.760 kb on + strand, within IAI47_01610at 349.761 kb on - strand, within IAI47_01610at 350.266 kb on + strand, within IAI47_01610at 350.266 kb on + strand, within IAI47_01610at 350.266 kb on + strand, within IAI47_01610at 350.267 kb on - strand, within IAI47_01610at 350.267 kb on - strand, within IAI47_01610at 350.268 kb on + strand, within IAI47_01610at 350.268 kb on + strand, within IAI47_01610at 350.268 kb on + strand, within IAI47_01610at 350.268 kb on + strand, within IAI47_01610at 350.269 kb on - strand, within IAI47_01610at 350.328 kb on + strandat 350.328 kb on + strandat 350.328 kb on + strandat 350.328 kb on + strandat 350.329 kb on - strandat 350.329 kb on - strandat 350.329 kb on - strandat 350.365 kb on + strandat 350.402 kb on + strand, within IAI47_01615at 350.402 kb on + strand, within IAI47_01615at 350.402 kb on + strand, within IAI47_01615at 350.402 kb on + strand, within IAI47_01615at 350.402 kb on + strand, within IAI47_01615at 350.402 kb on + strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.403 kb on - strand, within IAI47_01615at 350.405 kb on + strand, within IAI47_01615at 350.406 kb on - strand, within IAI47_01615at 350.423 kb on + strand, within IAI47_01615at 350.453 kb on + strand, within IAI47_01615at 350.453 kb on + strand, within IAI47_01615at 350.453 kb on + strand, within IAI47_01615at 350.454 kb on - strand, within IAI47_01615at 350.549 kb on + strand, within IAI47_01615at 350.549 kb on + strand, within IAI47_01615at 350.549 kb on + strand, within IAI47_01615at 350.550 kb on - strand, within IAI47_01615at 350.551 kb on + strand, within IAI47_01615at 350.551 kb on + strand, within IAI47_01615at 350.551 kb on + strand, within IAI47_01615at 350.551 kb on + strand, within IAI47_01615at 350.551 kb on + strand, within IAI47_01615at 350.552 kb on - strand, within IAI47_01615at 350.552 kb on - strand, within IAI47_01615at 350.552 kb on - strand, within IAI47_01615at 350.561 kb on + strand, within IAI47_01615at 350.562 kb on - strand, within IAI47_01615at 350.562 kb on - strand, within IAI47_01615at 350.622 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.718 kb on + strandat 350.718 kb on + strandat 350.718 kb on + strandat 350.718 kb on + strandat 350.718 kb on + strandat 350.719 kb on - strandat 350.719 kb on - strandat 350.743 kb on + strandat 350.743 kb on + strandat 350.743 kb on + strandat 350.743 kb on + strandat 350.744 kb on - strandat 350.744 kb on - strandat 350.755 kb on + strandat 350.755 kb on + strandat 350.755 kb on + strandat 350.756 kb on - strandat 350.771 kb on + strandat 350.772 kb on - strandat 350.781 kb on + strandat 350.791 kb on + strandat 350.798 kb on - strandat 350.826 kb on + strandat 350.830 kb on + strandat 350.830 kb on + strandat 350.831 kb on - strandat 350.834 kb on + strandat 350.835 kb on - strandat 350.882 kb on + strandat 350.883 kb on - strandat 350.883 kb on - strandat 350.883 kb on - strandat 350.883 kb on - strandat 350.958 kb on + strandat 350.958 kb on + strandat 351.152 kb on + strand, within IAI47_01620at 351.152 kb on + strand, within IAI47_01620at 351.152 kb on + strand, within IAI47_01620at 351.153 kb on - strand, within IAI47_01620at 351.153 kb on - strand, within IAI47_01620at 351.153 kb on - strand, within IAI47_01620at 351.153 kb on - strand, within IAI47_01620at 351.188 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.230 kb on + strand, within IAI47_01620at 351.231 kb on - strand, within IAI47_01620at 351.231 kb on - strand, within IAI47_01620at 351.231 kb on - strand, within IAI47_01620at 351.231 kb on - strand, within IAI47_01620at 351.242 kb on + strand, within IAI47_01620at 351.242 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.263 kb on + strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.264 kb on - strand, within IAI47_01620at 351.296 kb on + strand, within IAI47_01620at 351.296 kb on + strand, within IAI47_01620at 351.297 kb on - strand, within IAI47_01620at 351.340 kb on - strand, within IAI47_01620at 351.340 kb on - strand, within IAI47_01620at 351.340 kb on - strand, within IAI47_01620at 351.458 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.486 kb on + strand, within IAI47_01620at 351.487 kb on - strand, within IAI47_01620at 351.488 kb on + strand, within IAI47_01620at 351.489 kb on - strand, within IAI47_01620at 351.588 kb on + strand, within IAI47_01620at 351.588 kb on + strand, within IAI47_01620at 351.588 kb on + strand, within IAI47_01620at 351.589 kb on - strand, within IAI47_01620at 351.589 kb on - strand, within IAI47_01620at 351.589 kb on - strand, within IAI47_01620

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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349,405 + IAI47_01605 0.79 +0.6
349,405 + IAI47_01605 0.79 -0.3
349,405 + IAI47_01605 0.79 -1.2
349,406 - IAI47_01605 0.79 -0.8
349,406 - IAI47_01605 0.79 +1.3
349,406 - IAI47_01605 0.79 +0.7
349,406 - IAI47_01605 0.79 +1.6
349,417 + IAI47_01605 0.80 -0.3
349,418 - IAI47_01605 0.80 +1.0
349,453 + IAI47_01605 0.84 -1.8
349,453 + IAI47_01605 0.84 +1.0
349,454 - IAI47_01605 0.84 +0.4
349,454 - IAI47_01605 0.84 -0.7
349,477 + IAI47_01605 0.86 -2.8
349,478 - IAI47_01605 0.86 -1.6
349,518 + IAI47_01605 0.90 -2.0
349,518 + IAI47_01605 0.90 -0.2
349,519 - IAI47_01605 0.90 +0.5
349,519 - IAI47_01605 0.90 -1.6
349,519 - IAI47_01605 0.90 +2.2
349,525 - +0.7
349,525 - +0.1
349,555 + +0.9
349,555 + -0.7
349,555 + +0.1
349,555 + -1.3
349,555 + -2.7
349,556 - -0.6
349,556 - -0.9
349,556 - -1.9
349,556 - -0.4
349,556 - +0.6
349,587 + +0.9
349,587 + +0.4
349,588 - -0.6
349,645 + -0.7
349,645 + -1.3
349,646 - +1.1
349,646 - +1.3
349,696 - -2.1
349,727 - IAI47_01610 0.14 +0.4
349,727 - IAI47_01610 0.14 +1.1
349,760 + IAI47_01610 0.18 +0.9
349,761 - IAI47_01610 0.18 +0.0
350,266 + IAI47_01610 0.86 -1.1
350,266 + IAI47_01610 0.86 +3.0
350,266 + IAI47_01610 0.86 +0.5
350,267 - IAI47_01610 0.86 -1.7
350,267 - IAI47_01610 0.86 +0.9
350,268 + IAI47_01610 0.87 -0.3
350,268 + IAI47_01610 0.87 +0.6
350,268 + IAI47_01610 0.87 -0.2
350,268 + IAI47_01610 0.87 +1.5
350,269 - IAI47_01610 0.87 -1.5
350,328 + +2.3
350,328 + -1.7
350,328 + +2.3
350,328 + -0.7
350,329 - +0.5
350,329 - -0.1
350,329 - +0.7
350,365 + +0.5
350,402 + IAI47_01615 0.13 -2.2
350,402 + IAI47_01615 0.13 -1.5
350,402 + IAI47_01615 0.13 +0.8
350,402 + IAI47_01615 0.13 +0.7
350,402 + IAI47_01615 0.13 +1.8
350,402 + IAI47_01615 0.13 +1.3
350,403 - IAI47_01615 0.14 -0.6
350,403 - IAI47_01615 0.14 -0.9
350,403 - IAI47_01615 0.14 -0.6
350,403 - IAI47_01615 0.14 +1.1
350,403 - IAI47_01615 0.14 +1.8
350,403 - IAI47_01615 0.14 +2.0
350,403 - IAI47_01615 0.14 +2.9
350,403 - IAI47_01615 0.14 +2.7
350,405 + IAI47_01615 0.15 +2.2
350,406 - IAI47_01615 0.15 -0.2
350,423 + IAI47_01615 0.21 -2.0
350,453 + IAI47_01615 0.32 +1.1
350,453 + IAI47_01615 0.32 -1.4
350,453 + IAI47_01615 0.32 -0.7
350,454 - IAI47_01615 0.32 -0.0
350,549 + IAI47_01615 0.66 +0.8
350,549 + IAI47_01615 0.66 -1.0
350,549 + IAI47_01615 0.66 +1.7
350,550 - IAI47_01615 0.66 -0.8
350,551 + IAI47_01615 0.66 +1.0
350,551 + IAI47_01615 0.66 +1.5
350,551 + IAI47_01615 0.66 -0.9
350,551 + IAI47_01615 0.66 -0.7
350,551 + IAI47_01615 0.66 +1.5
350,552 - IAI47_01615 0.67 -0.2
350,552 - IAI47_01615 0.67 +0.2
350,552 - IAI47_01615 0.67 +0.1
350,561 + IAI47_01615 0.70 +1.3
350,562 - IAI47_01615 0.70 -1.5
350,562 - IAI47_01615 0.70 +0.9
350,622 + -1.8
350,631 + -1.5
350,631 + -0.5
350,718 + +0.3
350,718 + -2.3
350,718 + +0.9
350,718 + -1.0
350,718 + -0.6
350,719 - +0.8
350,719 - +0.8
350,743 + -1.3
350,743 + +0.0
350,743 + -1.6
350,743 + -1.3
350,744 - -1.1
350,744 - +0.8
350,755 + -1.7
350,755 + -0.6
350,755 + +0.8
350,756 - -1.8
350,771 + +0.8
350,772 - -0.5
350,781 + +3.8
350,791 + -1.4
350,798 - +0.5
350,826 + -0.3
350,830 + -1.5
350,830 + -0.3
350,831 - -1.9
350,834 + -0.4
350,835 - +0.3
350,882 + -0.7
350,883 - -0.6
350,883 - +0.9
350,883 - +0.0
350,883 - -0.7
350,958 + +0.7
350,958 + -0.3
351,152 + IAI47_01620 0.17 +0.7
351,152 + IAI47_01620 0.17 -0.6
351,152 + IAI47_01620 0.17 -1.7
351,153 - IAI47_01620 0.17 +0.3
351,153 - IAI47_01620 0.17 -0.9
351,153 - IAI47_01620 0.17 -1.4
351,153 - IAI47_01620 0.17 -1.4
351,188 + IAI47_01620 0.19 +0.3
351,230 + IAI47_01620 0.22 -0.7
351,230 + IAI47_01620 0.22 +1.1
351,230 + IAI47_01620 0.22 +0.0
351,230 + IAI47_01620 0.22 -2.5
351,230 + IAI47_01620 0.22 +0.1
351,230 + IAI47_01620 0.22 +0.5
351,231 - IAI47_01620 0.22 +0.4
351,231 - IAI47_01620 0.22 -1.6
351,231 - IAI47_01620 0.22 +0.4
351,231 - IAI47_01620 0.22 -0.6
351,242 + IAI47_01620 0.22 +0.0
351,242 + IAI47_01620 0.22 -1.8
351,263 + IAI47_01620 0.23 +0.7
351,263 + IAI47_01620 0.23 -1.3
351,263 + IAI47_01620 0.23 -0.1
351,263 + IAI47_01620 0.23 -0.1
351,263 + IAI47_01620 0.23 +0.6
351,263 + IAI47_01620 0.23 -3.0
351,263 + IAI47_01620 0.23 +0.3
351,263 + IAI47_01620 0.23 +0.2
351,263 + IAI47_01620 0.23 -2.5
351,263 + IAI47_01620 0.23 +0.7
351,263 + IAI47_01620 0.23 +0.9
351,263 + IAI47_01620 0.23 -2.3
351,263 + IAI47_01620 0.23 +1.1
351,264 - IAI47_01620 0.23 +0.1
351,264 - IAI47_01620 0.23 -0.3
351,264 - IAI47_01620 0.23 +0.5
351,264 - IAI47_01620 0.23 +3.7
351,264 - IAI47_01620 0.23 -0.0
351,264 - IAI47_01620 0.23 +1.5
351,264 - IAI47_01620 0.23 +1.3
351,264 - IAI47_01620 0.23 -1.2
351,296 + IAI47_01620 0.25 +0.5
351,296 + IAI47_01620 0.25 -2.2
351,297 - IAI47_01620 0.25 -2.2
351,340 - IAI47_01620 0.28 -0.7
351,340 - IAI47_01620 0.28 -2.2
351,340 - IAI47_01620 0.28 -0.1
351,458 + IAI47_01620 0.35 -0.2
351,486 + IAI47_01620 0.36 -0.5
351,486 + IAI47_01620 0.36 +1.5
351,486 + IAI47_01620 0.36 -1.0
351,486 + IAI47_01620 0.36 +2.4
351,486 + IAI47_01620 0.36 +0.5
351,486 + IAI47_01620 0.36 -1.2
351,487 - IAI47_01620 0.36 +0.3
351,488 + IAI47_01620 0.36 -0.9
351,489 - IAI47_01620 0.36 -0.7
351,588 + IAI47_01620 0.42 +1.6
351,588 + IAI47_01620 0.42 -0.5
351,588 + IAI47_01620 0.42 -2.0
351,589 - IAI47_01620 0.42 +1.9
351,589 - IAI47_01620 0.42 +3.0
351,589 - IAI47_01620 0.42 +0.5

Or see this region's nucleotide sequence