Strain Fitness in Pantoea sp. MT58 around IAI47_20840

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20830 and IAI47_20835 are separated by 29 nucleotidesIAI47_20835 and IAI47_20840 are separated by 161 nucleotidesIAI47_20840 and IAI47_20845 are separated by 435 nucleotides IAI47_20830: IAI47_20830 - DUF2000 domain-containing protein, at 411,087 to 411,509 _20830 IAI47_20835: IAI47_20835 - Dabb family protein, at 411,539 to 411,895 _20835 IAI47_20840: IAI47_20840 - Lrp/AsnC family transcriptional regulator, at 412,057 to 412,530 _20840 IAI47_20845: IAI47_20845 - SDR family oxidoreductase, at 412,966 to 413,766 _20845 Position (kb) 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 411.078 kb on + strandat 411.079 kb on - strandat 411.079 kb on - strandat 411.085 kb on - strandat 411.089 kb on - strandat 411.094 kb on + strandat 411.167 kb on + strand, within IAI47_20830at 411.167 kb on + strand, within IAI47_20830at 411.202 kb on + strand, within IAI47_20830at 411.218 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.286 kb on - strand, within IAI47_20830at 411.286 kb on - strand, within IAI47_20830at 411.298 kb on + strand, within IAI47_20830at 411.298 kb on + strand, within IAI47_20830at 411.315 kb on + strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.334 kb on + strand, within IAI47_20830at 411.338 kb on + strand, within IAI47_20830at 411.338 kb on + strand, within IAI47_20830at 411.349 kb on + strand, within IAI47_20830at 411.350 kb on - strand, within IAI47_20830at 411.350 kb on - strand, within IAI47_20830at 411.374 kb on + strand, within IAI47_20830at 411.473 kb on + strandat 411.474 kb on - strandat 411.479 kb on + strandat 411.479 kb on + strandat 411.479 kb on + strandat 411.513 kb on - strandat 411.540 kb on + strandat 411.541 kb on - strandat 411.588 kb on - strand, within IAI47_20835at 411.588 kb on - strand, within IAI47_20835at 411.588 kb on - strand, within IAI47_20835at 411.592 kb on + strand, within IAI47_20835at 411.593 kb on - strand, within IAI47_20835at 411.593 kb on - strand, within IAI47_20835at 411.613 kb on + strand, within IAI47_20835at 411.637 kb on + strand, within IAI47_20835at 411.637 kb on + strand, within IAI47_20835at 411.640 kb on - strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.685 kb on - strand, within IAI47_20835at 411.685 kb on - strand, within IAI47_20835at 411.722 kb on + strand, within IAI47_20835at 411.723 kb on - strand, within IAI47_20835at 411.757 kb on + strand, within IAI47_20835at 411.758 kb on - strand, within IAI47_20835at 411.782 kb on + strand, within IAI47_20835at 411.783 kb on - strand, within IAI47_20835at 411.791 kb on - strand, within IAI47_20835at 411.794 kb on - strand, within IAI47_20835at 411.794 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.871 kb on + strandat 411.871 kb on + strandat 411.872 kb on - strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.896 kb on - strandat 411.924 kb on + strandat 411.951 kb on + strandat 411.978 kb on - strandat 411.981 kb on + strandat 411.982 kb on - strandat 411.982 kb on - strandat 411.983 kb on + strandat 411.984 kb on - strandat 412.038 kb on + strandat 412.077 kb on + strandat 412.077 kb on + strandat 412.077 kb on + strandat 412.078 kb on - strandat 412.085 kb on + strandat 412.086 kb on - strandat 412.142 kb on + strand, within IAI47_20840at 412.142 kb on + strand, within IAI47_20840at 412.142 kb on + strand, within IAI47_20840at 412.220 kb on + strand, within IAI47_20840at 412.220 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.349 kb on - strand, within IAI47_20840at 412.354 kb on - strand, within IAI47_20840at 412.408 kb on + strand, within IAI47_20840at 412.504 kb on + strandat 412.505 kb on - strandat 412.505 kb on - strandat 412.509 kb on + strandat 412.509 kb on + strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.513 kb on - strandat 412.513 kb on - strandat 412.528 kb on + strandat 412.528 kb on + strandat 412.528 kb on + strandat 412.529 kb on - strandat 412.529 kb on - strandat 412.601 kb on + strandat 412.787 kb on + strandat 412.787 kb on + strandat 412.787 kb on + strandat 412.788 kb on - strandat 412.807 kb on - strandat 412.808 kb on + strandat 412.809 kb on - strandat 412.809 kb on - strandat 412.809 kb on - strandat 412.813 kb on + strandat 412.853 kb on - strandat 412.942 kb on + strandat 412.943 kb on - strandat 412.943 kb on - strandat 412.943 kb on - strandat 412.954 kb on + strandat 412.954 kb on + strandat 412.955 kb on - strandat 413.073 kb on + strand, within IAI47_20845at 413.074 kb on - strand, within IAI47_20845at 413.074 kb on - strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.077 kb on + strand, within IAI47_20845at 413.078 kb on - strand, within IAI47_20845at 413.078 kb on - strand, within IAI47_20845at 413.151 kb on + strand, within IAI47_20845at 413.151 kb on + strand, within IAI47_20845at 413.162 kb on + strand, within IAI47_20845at 413.163 kb on - strand, within IAI47_20845at 413.180 kb on + strand, within IAI47_20845at 413.180 kb on + strand, within IAI47_20845at 413.181 kb on - strand, within IAI47_20845at 413.181 kb on - strand, within IAI47_20845at 413.181 kb on - strand, within IAI47_20845at 413.301 kb on + strand, within IAI47_20845at 413.301 kb on + strand, within IAI47_20845at 413.302 kb on - strand, within IAI47_20845at 413.302 kb on - strand, within IAI47_20845at 413.304 kb on + strand, within IAI47_20845at 413.304 kb on + strand, within IAI47_20845at 413.304 kb on + strand, within IAI47_20845at 413.304 kb on + strand, within IAI47_20845at 413.407 kb on - strand, within IAI47_20845at 413.412 kb on + strand, within IAI47_20845at 413.412 kb on + strand, within IAI47_20845at 413.412 kb on + strand, within IAI47_20845at 413.413 kb on - strand, within IAI47_20845at 413.413 kb on - strand, within IAI47_20845at 413.413 kb on - strand, within IAI47_20845at 413.434 kb on - strand, within IAI47_20845at 413.434 kb on - strand, within IAI47_20845at 413.434 kb on - strand, within IAI47_20845at 413.434 kb on - strand, within IAI47_20845at 413.458 kb on + strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845at 413.459 kb on - strand, within IAI47_20845

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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411,078 + -2.2
411,079 - -0.1
411,079 - +0.8
411,085 - -1.5
411,089 - -0.5
411,094 + +1.3
411,167 + IAI47_20830 0.19 +2.0
411,167 + IAI47_20830 0.19 -0.1
411,202 + IAI47_20830 0.27 +0.8
411,218 + IAI47_20830 0.31 +2.0
411,253 + IAI47_20830 0.39 +1.7
411,253 + IAI47_20830 0.39 -0.4
411,253 + IAI47_20830 0.39 +0.5
411,253 + IAI47_20830 0.39 +1.2
411,253 + IAI47_20830 0.39 -0.3
411,253 + IAI47_20830 0.39 -0.2
411,253 + IAI47_20830 0.39 +0.1
411,253 + IAI47_20830 0.39 -0.5
411,253 + IAI47_20830 0.39 -0.1
411,254 - IAI47_20830 0.39 -1.4
411,254 - IAI47_20830 0.39 -0.6
411,254 - IAI47_20830 0.39 -0.1
411,254 - IAI47_20830 0.39 -0.0
411,254 - IAI47_20830 0.39 -1.2
411,254 - IAI47_20830 0.39 +0.3
411,286 - IAI47_20830 0.47 -1.2
411,286 - IAI47_20830 0.47 +0.9
411,298 + IAI47_20830 0.50 +0.7
411,298 + IAI47_20830 0.50 -0.7
411,315 + IAI47_20830 0.54 -0.5
411,316 - IAI47_20830 0.54 -0.6
411,316 - IAI47_20830 0.54 -0.7
411,316 - IAI47_20830 0.54 +0.4
411,316 - IAI47_20830 0.54 -1.0
411,334 + IAI47_20830 0.58 +3.3
411,338 + IAI47_20830 0.59 +1.0
411,338 + IAI47_20830 0.59 +4.0
411,349 + IAI47_20830 0.62 -0.3
411,350 - IAI47_20830 0.62 -0.1
411,350 - IAI47_20830 0.62 +0.7
411,374 + IAI47_20830 0.68 -1.2
411,473 + +1.2
411,474 - +0.6
411,479 + -1.0
411,479 + -0.6
411,479 + +0.5
411,513 - +0.3
411,540 + -1.6
411,541 - -0.7
411,588 - IAI47_20835 0.14 +0.6
411,588 - IAI47_20835 0.14 -0.1
411,588 - IAI47_20835 0.14 -1.2
411,592 + IAI47_20835 0.15 +0.7
411,593 - IAI47_20835 0.15 +0.7
411,593 - IAI47_20835 0.15 +0.5
411,613 + IAI47_20835 0.21 -1.4
411,637 + IAI47_20835 0.27 +1.9
411,637 + IAI47_20835 0.27 -1.3
411,640 - IAI47_20835 0.28 +0.6
411,682 + IAI47_20835 0.40 +0.1
411,682 + IAI47_20835 0.40 +0.7
411,682 + IAI47_20835 0.40 +0.6
411,682 + IAI47_20835 0.40 -1.8
411,682 + IAI47_20835 0.40 +1.0
411,683 - IAI47_20835 0.40 -1.1
411,683 - IAI47_20835 0.40 +1.6
411,683 - IAI47_20835 0.40 -0.5
411,683 - IAI47_20835 0.40 -0.4
411,684 + IAI47_20835 0.41 -0.3
411,684 + IAI47_20835 0.41 -0.9
411,684 + IAI47_20835 0.41 -2.5
411,685 - IAI47_20835 0.41 +0.8
411,685 - IAI47_20835 0.41 +0.1
411,722 + IAI47_20835 0.51 -1.0
411,723 - IAI47_20835 0.52 +0.2
411,757 + IAI47_20835 0.61 +1.9
411,758 - IAI47_20835 0.61 +0.1
411,782 + IAI47_20835 0.68 +1.3
411,783 - IAI47_20835 0.68 +0.0
411,791 - IAI47_20835 0.71 -3.3
411,794 - IAI47_20835 0.71 +2.1
411,794 - IAI47_20835 0.71 -0.2
411,833 - IAI47_20835 0.82 +1.2
411,833 - IAI47_20835 0.82 -0.2
411,833 - IAI47_20835 0.82 -0.9
411,871 + -0.9
411,871 + +0.9
411,872 - -1.5
411,895 + -2.3
411,895 + +1.5
411,895 + -0.9
411,895 + +0.4
411,895 + -0.1
411,896 - +0.7
411,924 + +1.7
411,951 + -0.1
411,978 - +2.3
411,981 + -0.0
411,982 - +1.0
411,982 - -0.8
411,983 + -1.3
411,984 - -0.4
412,038 + +0.2
412,077 + +0.3
412,077 + -0.1
412,077 + -1.0
412,078 - +0.5
412,085 + -0.1
412,086 - +1.0
412,142 + IAI47_20840 0.18 +1.9
412,142 + IAI47_20840 0.18 -0.1
412,142 + IAI47_20840 0.18 +1.1
412,220 + IAI47_20840 0.34 +1.2
412,220 + IAI47_20840 0.34 -2.0
412,348 + IAI47_20840 0.61 -0.3
412,348 + IAI47_20840 0.61 +1.2
412,348 + IAI47_20840 0.61 +1.7
412,348 + IAI47_20840 0.61 -0.0
412,349 - IAI47_20840 0.62 +3.0
412,354 - IAI47_20840 0.63 -1.3
412,408 + IAI47_20840 0.74 +1.5
412,504 + -1.9
412,505 - -0.0
412,505 - -0.5
412,509 + -2.2
412,509 + -1.0
412,510 - -0.0
412,510 - +1.5
412,510 - -0.3
412,510 - +1.1
412,513 - -0.2
412,513 - -0.7
412,528 + -0.7
412,528 + +1.5
412,528 + -1.8
412,529 - +0.1
412,529 - -1.2
412,601 + +0.0
412,787 + +0.4
412,787 + +1.2
412,787 + -1.7
412,788 - +2.5
412,807 - +0.1
412,808 + +0.1
412,809 - +0.0
412,809 - -0.5
412,809 - +0.0
412,813 + -0.3
412,853 - +0.1
412,942 + -1.2
412,943 - +0.5
412,943 - -2.2
412,943 - +0.3
412,954 + +0.5
412,954 + +0.8
412,955 - +1.5
413,073 + IAI47_20845 0.13 +0.4
413,074 - IAI47_20845 0.13 -0.7
413,074 - IAI47_20845 0.13 +0.5
413,077 + IAI47_20845 0.14 +0.5
413,077 + IAI47_20845 0.14 +1.2
413,077 + IAI47_20845 0.14 -0.5
413,077 + IAI47_20845 0.14 +1.3
413,077 + IAI47_20845 0.14 +0.8
413,077 + IAI47_20845 0.14 +0.4
413,078 - IAI47_20845 0.14 -0.5
413,078 - IAI47_20845 0.14 +0.9
413,151 + IAI47_20845 0.23 -0.1
413,151 + IAI47_20845 0.23 +1.0
413,162 + IAI47_20845 0.24 +1.5
413,163 - IAI47_20845 0.25 -0.3
413,180 + IAI47_20845 0.27 -0.9
413,180 + IAI47_20845 0.27 -0.5
413,181 - IAI47_20845 0.27 -0.1
413,181 - IAI47_20845 0.27 +0.1
413,181 - IAI47_20845 0.27 -0.4
413,301 + IAI47_20845 0.42 +1.0
413,301 + IAI47_20845 0.42 -2.2
413,302 - IAI47_20845 0.42 -1.3
413,302 - IAI47_20845 0.42 +1.5
413,304 + IAI47_20845 0.42 -0.1
413,304 + IAI47_20845 0.42 +0.1
413,304 + IAI47_20845 0.42 +1.6
413,304 + IAI47_20845 0.42 +0.7
413,407 - IAI47_20845 0.55 -0.9
413,412 + IAI47_20845 0.56 +0.4
413,412 + IAI47_20845 0.56 -0.2
413,412 + IAI47_20845 0.56 +0.5
413,413 - IAI47_20845 0.56 -1.1
413,413 - IAI47_20845 0.56 -1.1
413,413 - IAI47_20845 0.56 +0.6
413,434 - IAI47_20845 0.58 -0.1
413,434 - IAI47_20845 0.58 -1.7
413,434 - IAI47_20845 0.58 +0.9
413,434 - IAI47_20845 0.58 -1.0
413,458 + IAI47_20845 0.61 -1.8
413,459 - IAI47_20845 0.62 -1.3
413,459 - IAI47_20845 0.62 -0.5
413,459 - IAI47_20845 0.62 -0.3
413,459 - IAI47_20845 0.62 +1.6
413,459 - IAI47_20845 0.62 +2.0
413,459 - IAI47_20845 0.62 +1.1

Or see this region's nucleotide sequence