Strain Fitness in Pantoea sp. MT58 around IAI47_19825

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19820 and IAI47_19825 are separated by 83 nucleotidesIAI47_19825 and IAI47_19830 are separated by 472 nucleotides IAI47_19820: IAI47_19820 - MCP four helix bundle domain-containing protein, at 190,151 to 191,770 _19820 IAI47_19825: IAI47_19825 - EAL domain-containing protein, at 191,854 to 193,465 _19825 IAI47_19830: IAI47_19830 - helix-turn-helix domain-containing protein, at 193,938 to 194,876 _19830 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 190.866 kb on - strand, within IAI47_19820at 190.899 kb on - strand, within IAI47_19820at 190.904 kb on - strand, within IAI47_19820at 190.904 kb on - strand, within IAI47_19820at 190.920 kb on - strand, within IAI47_19820at 190.942 kb on + strand, within IAI47_19820at 190.943 kb on - strand, within IAI47_19820at 190.943 kb on - strand, within IAI47_19820at 190.961 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.987 kb on + strand, within IAI47_19820at 190.988 kb on - strand, within IAI47_19820at 191.050 kb on + strand, within IAI47_19820at 191.051 kb on - strand, within IAI47_19820at 191.084 kb on + strand, within IAI47_19820at 191.084 kb on + strand, within IAI47_19820at 191.103 kb on + strand, within IAI47_19820at 191.103 kb on + strand, within IAI47_19820at 191.104 kb on - strand, within IAI47_19820at 191.104 kb on - strand, within IAI47_19820at 191.116 kb on + strand, within IAI47_19820at 191.131 kb on + strand, within IAI47_19820at 191.132 kb on - strand, within IAI47_19820at 191.132 kb on - strand, within IAI47_19820at 191.147 kb on - strand, within IAI47_19820at 191.183 kb on - strand, within IAI47_19820at 191.195 kb on + strand, within IAI47_19820at 191.196 kb on - strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.203 kb on + strand, within IAI47_19820at 191.204 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.206 kb on - strand, within IAI47_19820at 191.213 kb on - strand, within IAI47_19820at 191.213 kb on - strand, within IAI47_19820at 191.271 kb on - strand, within IAI47_19820at 191.278 kb on + strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.279 kb on - strand, within IAI47_19820at 191.283 kb on + strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.284 kb on - strand, within IAI47_19820at 191.294 kb on + strand, within IAI47_19820at 191.338 kb on + strand, within IAI47_19820at 191.339 kb on - strand, within IAI47_19820at 191.339 kb on - strand, within IAI47_19820at 191.404 kb on + strand, within IAI47_19820at 191.404 kb on + strand, within IAI47_19820at 191.405 kb on - strand, within IAI47_19820at 191.473 kb on + strand, within IAI47_19820at 191.537 kb on + strand, within IAI47_19820at 191.552 kb on + strand, within IAI47_19820at 191.571 kb on - strand, within IAI47_19820at 191.582 kb on - strand, within IAI47_19820at 191.600 kb on + strand, within IAI47_19820at 191.601 kb on - strand, within IAI47_19820at 191.601 kb on - strand, within IAI47_19820at 191.610 kb on + strandat 191.636 kb on - strandat 191.739 kb on - strandat 191.759 kb on - strandat 191.771 kb on + strandat 191.771 kb on + strandat 191.775 kb on - strandat 191.775 kb on - strandat 191.842 kb on + strandat 191.843 kb on - strandat 191.862 kb on + strandat 191.915 kb on + strandat 191.959 kb on - strandat 191.965 kb on + strandat 191.993 kb on - strandat 192.043 kb on + strand, within IAI47_19825at 192.044 kb on - strand, within IAI47_19825at 192.044 kb on - strand, within IAI47_19825at 192.091 kb on - strand, within IAI47_19825at 192.123 kb on - strand, within IAI47_19825at 192.247 kb on + strand, within IAI47_19825at 192.247 kb on + strand, within IAI47_19825at 192.297 kb on - strand, within IAI47_19825at 192.313 kb on - strand, within IAI47_19825at 192.355 kb on - strand, within IAI47_19825at 192.444 kb on + strand, within IAI47_19825at 192.468 kb on + strand, within IAI47_19825at 192.491 kb on - strand, within IAI47_19825at 192.514 kb on + strand, within IAI47_19825at 192.559 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.568 kb on + strand, within IAI47_19825at 192.569 kb on - strand, within IAI47_19825at 192.569 kb on - strand, within IAI47_19825at 192.603 kb on + strand, within IAI47_19825at 192.627 kb on - strand, within IAI47_19825at 192.701 kb on - strand, within IAI47_19825at 192.701 kb on - strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.702 kb on + strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.703 kb on - strand, within IAI47_19825at 192.705 kb on + strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.706 kb on - strand, within IAI47_19825at 192.715 kb on - strand, within IAI47_19825at 192.743 kb on - strand, within IAI47_19825at 192.743 kb on - strand, within IAI47_19825at 192.812 kb on - strand, within IAI47_19825at 192.946 kb on + strand, within IAI47_19825at 192.946 kb on + strand, within IAI47_19825at 193.155 kb on - strand, within IAI47_19825at 193.392 kb on - strandat 193.442 kb on - strandat 193.565 kb on + strandat 193.569 kb on + strandat 193.582 kb on - strandat 193.584 kb on + strandat 193.626 kb on - strandat 193.628 kb on + strandat 193.701 kb on - strandat 193.746 kb on - strandat 193.757 kb on - strandat 193.778 kb on + strandat 193.779 kb on - strandat 193.820 kb on - strandat 193.840 kb on + strandat 193.840 kb on + strandat 193.841 kb on - strandat 193.853 kb on + strandat 193.854 kb on - strandat 193.855 kb on + strandat 193.856 kb on - strandat 193.856 kb on - strandat 193.885 kb on + strandat 193.886 kb on - strandat 193.912 kb on - strandat 193.922 kb on + strandat 193.939 kb on + strandat 194.001 kb on + strandat 194.001 kb on + strandat 194.001 kb on + strandat 194.002 kb on - strandat 194.002 kb on - strandat 194.067 kb on + strand, within IAI47_19830at 194.068 kb on - strand, within IAI47_19830at 194.068 kb on - strand, within IAI47_19830at 194.072 kb on + strand, within IAI47_19830at 194.073 kb on - strand, within IAI47_19830at 194.073 kb on - strand, within IAI47_19830at 194.078 kb on + strand, within IAI47_19830at 194.115 kb on + strand, within IAI47_19830at 194.115 kb on + strand, within IAI47_19830at 194.135 kb on + strand, within IAI47_19830at 194.159 kb on + strand, within IAI47_19830at 194.159 kb on + strand, within IAI47_19830at 194.189 kb on + strand, within IAI47_19830at 194.189 kb on + strand, within IAI47_19830at 194.189 kb on + strand, within IAI47_19830at 194.190 kb on - strand, within IAI47_19830at 194.192 kb on + strand, within IAI47_19830at 194.192 kb on + strand, within IAI47_19830at 194.192 kb on + strand, within IAI47_19830at 194.193 kb on - strand, within IAI47_19830at 194.193 kb on - strand, within IAI47_19830at 194.193 kb on - strand, within IAI47_19830at 194.241 kb on + strand, within IAI47_19830at 194.241 kb on + strand, within IAI47_19830at 194.241 kb on + strand, within IAI47_19830at 194.241 kb on + strand, within IAI47_19830at 194.241 kb on + strand, within IAI47_19830at 194.242 kb on - strand, within IAI47_19830at 194.242 kb on - strand, within IAI47_19830at 194.242 kb on - strand, within IAI47_19830at 194.259 kb on + strand, within IAI47_19830at 194.259 kb on + strand, within IAI47_19830at 194.260 kb on - strand, within IAI47_19830at 194.263 kb on - strand, within IAI47_19830at 194.279 kb on + strand, within IAI47_19830at 194.280 kb on - strand, within IAI47_19830at 194.302 kb on + strand, within IAI47_19830at 194.302 kb on + strand, within IAI47_19830at 194.303 kb on - strand, within IAI47_19830at 194.303 kb on - strand, within IAI47_19830at 194.303 kb on - strand, within IAI47_19830at 194.303 kb on - strand, within IAI47_19830at 194.303 kb on - strand, within IAI47_19830at 194.316 kb on + strand, within IAI47_19830at 194.317 kb on - strand, within IAI47_19830at 194.387 kb on + strand, within IAI47_19830at 194.388 kb on - strand, within IAI47_19830at 194.388 kb on - strand, within IAI47_19830at 194.390 kb on + strand, within IAI47_19830at 194.391 kb on - strand, within IAI47_19830at 194.436 kb on + strand, within IAI47_19830at 194.437 kb on - strand, within IAI47_19830at 194.462 kb on + strand, within IAI47_19830

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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190,866 - IAI47_19820 0.44 +0.9
190,899 - IAI47_19820 0.46 -0.4
190,904 - IAI47_19820 0.46 -0.6
190,904 - IAI47_19820 0.46 -0.7
190,920 - IAI47_19820 0.47 +1.0
190,942 + IAI47_19820 0.49 -0.7
190,943 - IAI47_19820 0.49 +0.7
190,943 - IAI47_19820 0.49 +1.5
190,961 + IAI47_19820 0.50 +2.2
190,987 + IAI47_19820 0.52 +0.4
190,987 + IAI47_19820 0.52 +0.1
190,987 + IAI47_19820 0.52 -0.3
190,988 - IAI47_19820 0.52 -1.0
191,050 + IAI47_19820 0.55 -0.1
191,051 - IAI47_19820 0.56 -0.4
191,084 + IAI47_19820 0.58 +0.1
191,084 + IAI47_19820 0.58 -0.6
191,103 + IAI47_19820 0.59 -0.5
191,103 + IAI47_19820 0.59 -1.4
191,104 - IAI47_19820 0.59 -0.2
191,104 - IAI47_19820 0.59 -1.7
191,116 + IAI47_19820 0.60 -1.0
191,131 + IAI47_19820 0.60 +0.2
191,132 - IAI47_19820 0.61 +1.2
191,132 - IAI47_19820 0.61 -1.1
191,147 - IAI47_19820 0.61 +0.9
191,183 - IAI47_19820 0.64 -0.5
191,195 + IAI47_19820 0.64 -0.5
191,196 - IAI47_19820 0.65 +1.2
191,203 + IAI47_19820 0.65 +1.6
191,203 + IAI47_19820 0.65 -1.0
191,203 + IAI47_19820 0.65 -2.7
191,203 + IAI47_19820 0.65 +0.3
191,204 - IAI47_19820 0.65 +0.3
191,206 - IAI47_19820 0.65 +1.0
191,206 - IAI47_19820 0.65 -0.9
191,206 - IAI47_19820 0.65 -0.7
191,213 - IAI47_19820 0.66 -1.8
191,213 - IAI47_19820 0.66 -1.4
191,271 - IAI47_19820 0.69 +1.8
191,278 + IAI47_19820 0.70 -0.6
191,279 - IAI47_19820 0.70 -0.4
191,279 - IAI47_19820 0.70 +0.2
191,279 - IAI47_19820 0.70 -1.2
191,283 + IAI47_19820 0.70 +0.1
191,284 - IAI47_19820 0.70 -0.7
191,284 - IAI47_19820 0.70 -0.6
191,284 - IAI47_19820 0.70 -1.4
191,294 + IAI47_19820 0.71 -0.5
191,338 + IAI47_19820 0.73 -2.4
191,339 - IAI47_19820 0.73 -0.3
191,339 - IAI47_19820 0.73 +0.2
191,404 + IAI47_19820 0.77 -0.1
191,404 + IAI47_19820 0.77 +0.3
191,405 - IAI47_19820 0.77 +0.9
191,473 + IAI47_19820 0.82 +1.2
191,537 + IAI47_19820 0.86 -1.7
191,552 + IAI47_19820 0.86 -2.2
191,571 - IAI47_19820 0.88 -1.2
191,582 - IAI47_19820 0.88 +1.3
191,600 + IAI47_19820 0.89 -0.5
191,601 - IAI47_19820 0.90 +0.3
191,601 - IAI47_19820 0.90 -0.1
191,610 + -1.1
191,636 - +1.1
191,739 - -1.6
191,759 - -1.2
191,771 + -2.1
191,771 + +0.9
191,775 - -0.4
191,775 - +1.4
191,842 + -0.3
191,843 - +2.2
191,862 + -0.1
191,915 + +1.8
191,959 - +0.3
191,965 + -0.4
191,993 - -0.8
192,043 + IAI47_19825 0.12 +0.1
192,044 - IAI47_19825 0.12 +0.1
192,044 - IAI47_19825 0.12 -0.8
192,091 - IAI47_19825 0.15 +0.1
192,123 - IAI47_19825 0.17 -1.5
192,247 + IAI47_19825 0.24 -0.5
192,247 + IAI47_19825 0.24 -1.0
192,297 - IAI47_19825 0.27 +0.7
192,313 - IAI47_19825 0.28 -0.9
192,355 - IAI47_19825 0.31 +0.1
192,444 + IAI47_19825 0.37 -2.0
192,468 + IAI47_19825 0.38 -1.5
192,491 - IAI47_19825 0.40 -2.2
192,514 + IAI47_19825 0.41 -1.4
192,559 + IAI47_19825 0.44 -0.5
192,568 + IAI47_19825 0.44 -1.9
192,568 + IAI47_19825 0.44 +0.1
192,568 + IAI47_19825 0.44 +1.3
192,569 - IAI47_19825 0.44 -0.4
192,569 - IAI47_19825 0.44 -0.5
192,603 + IAI47_19825 0.46 +3.0
192,627 - IAI47_19825 0.48 -0.7
192,701 - IAI47_19825 0.53 -1.2
192,701 - IAI47_19825 0.53 -0.9
192,702 + IAI47_19825 0.53 -0.4
192,702 + IAI47_19825 0.53 -0.7
192,702 + IAI47_19825 0.53 +0.9
192,702 + IAI47_19825 0.53 -2.4
192,702 + IAI47_19825 0.53 -0.5
192,703 - IAI47_19825 0.53 +1.5
192,703 - IAI47_19825 0.53 +1.3
192,703 - IAI47_19825 0.53 +0.5
192,703 - IAI47_19825 0.53 +0.5
192,705 + IAI47_19825 0.53 -1.5
192,706 - IAI47_19825 0.53 -0.4
192,706 - IAI47_19825 0.53 +0.1
192,706 - IAI47_19825 0.53 -0.6
192,706 - IAI47_19825 0.53 -0.8
192,715 - IAI47_19825 0.53 -0.8
192,743 - IAI47_19825 0.55 +0.1
192,743 - IAI47_19825 0.55 -0.5
192,812 - IAI47_19825 0.59 -1.6
192,946 + IAI47_19825 0.68 -0.4
192,946 + IAI47_19825 0.68 -0.5
193,155 - IAI47_19825 0.81 -1.4
193,392 - -2.5
193,442 - +0.5
193,565 + -0.5
193,569 + +2.0
193,582 - -0.4
193,584 + -0.4
193,626 - +1.8
193,628 + -0.8
193,701 - -0.2
193,746 - -0.5
193,757 - -1.7
193,778 + -0.6
193,779 - -0.8
193,820 - +1.0
193,840 + -1.5
193,840 + +2.1
193,841 - +2.3
193,853 + +0.3
193,854 - -0.9
193,855 + -0.4
193,856 - -0.1
193,856 - +0.4
193,885 + -1.1
193,886 - -0.1
193,912 - -2.1
193,922 + -0.9
193,939 + -0.6
194,001 + -0.1
194,001 + +0.7
194,001 + -1.1
194,002 - -0.1
194,002 - +0.5
194,067 + IAI47_19830 0.14 -0.4
194,068 - IAI47_19830 0.14 +0.2
194,068 - IAI47_19830 0.14 +1.7
194,072 + IAI47_19830 0.14 -1.6
194,073 - IAI47_19830 0.14 +0.7
194,073 - IAI47_19830 0.14 +0.9
194,078 + IAI47_19830 0.15 -1.7
194,115 + IAI47_19830 0.19 -0.9
194,115 + IAI47_19830 0.19 -0.7
194,135 + IAI47_19830 0.21 +2.7
194,159 + IAI47_19830 0.24 +1.6
194,159 + IAI47_19830 0.24 -1.4
194,189 + IAI47_19830 0.27 -1.2
194,189 + IAI47_19830 0.27 -0.2
194,189 + IAI47_19830 0.27 -1.2
194,190 - IAI47_19830 0.27 +0.7
194,192 + IAI47_19830 0.27 -0.7
194,192 + IAI47_19830 0.27 -1.1
194,192 + IAI47_19830 0.27 -0.5
194,193 - IAI47_19830 0.27 -2.2
194,193 - IAI47_19830 0.27 -0.4
194,193 - IAI47_19830 0.27 +0.4
194,241 + IAI47_19830 0.32 -1.5
194,241 + IAI47_19830 0.32 -0.3
194,241 + IAI47_19830 0.32 -1.0
194,241 + IAI47_19830 0.32 +0.9
194,241 + IAI47_19830 0.32 -0.8
194,242 - IAI47_19830 0.32 +0.5
194,242 - IAI47_19830 0.32 -1.4
194,242 - IAI47_19830 0.32 +0.7
194,259 + IAI47_19830 0.34 +1.2
194,259 + IAI47_19830 0.34 +0.8
194,260 - IAI47_19830 0.34 -0.7
194,263 - IAI47_19830 0.35 -0.4
194,279 + IAI47_19830 0.36 -0.2
194,280 - IAI47_19830 0.36 +1.8
194,302 + IAI47_19830 0.39 -0.3
194,302 + IAI47_19830 0.39 +0.9
194,303 - IAI47_19830 0.39 -1.9
194,303 - IAI47_19830 0.39 -2.4
194,303 - IAI47_19830 0.39 -0.5
194,303 - IAI47_19830 0.39 -0.0
194,303 - IAI47_19830 0.39 +0.7
194,316 + IAI47_19830 0.40 -1.0
194,317 - IAI47_19830 0.40 -3.1
194,387 + IAI47_19830 0.48 -0.5
194,388 - IAI47_19830 0.48 +0.6
194,388 - IAI47_19830 0.48 +3.0
194,390 + IAI47_19830 0.48 +3.0
194,391 - IAI47_19830 0.48 -2.8
194,436 + IAI47_19830 0.53 +1.5
194,437 - IAI47_19830 0.53 -0.7
194,462 + IAI47_19830 0.56 +0.5

Or see this region's nucleotide sequence