Strain Fitness in Pantoea sp. MT58 around IAI47_09390

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,983,568	+		IAI47_09385	0.37	-0.7
1,983,569	-		IAI47_09385	0.37	-1.4
1,983,582	-		IAI47_09385	0.38	+0.1
1,983,644	+		IAI47_09385	0.43	-2.2
1,983,687	+		IAI47_09385	0.47	+1.5
1,983,688	-		IAI47_09385	0.47	+0.6
1,983,705	+		IAI47_09385	0.48	+1.3
1,983,729	+		IAI47_09385	0.50	+1.2
1,983,729	+		IAI47_09385	0.50	+1.3
1,983,741	+		IAI47_09385	0.51	+2.9
1,983,744	+		IAI47_09385	0.51	-1.6
1,983,745	-		IAI47_09385	0.51	-1.0
1,983,745	-		IAI47_09385	0.51	-0.3
1,983,745	-		IAI47_09385	0.51	+0.5
1,983,825	+		IAI47_09385	0.58	-0.9
1,983,826	-				+0.3
1,983,836	+		IAI47_09385	0.59	-0.6
1,983,836	+		IAI47_09385	0.59	+1.0
1,983,836	+		IAI47_09385	0.59	-0.4
1,983,836	+		IAI47_09385	0.59	+0.7
1,983,844	+		IAI47_09385	0.59	-0.1
1,983,844	+		IAI47_09385	0.59	-1.9
1,983,844	+		IAI47_09385	0.59	+0.1
1,983,845	-		IAI47_09385	0.59	-2.4
1,983,920	+		IAI47_09385	0.65	+0.6
1,983,920	+		IAI47_09385	0.65	+0.7
1,983,920	+		IAI47_09385	0.65	+0.5
1,983,921	-		IAI47_09385	0.65	-1.5
1,983,981	+		IAI47_09385	0.70	+0.4
1,983,982	-		IAI47_09385	0.70	-0.2
1,984,019	+		IAI47_09385	0.73	+0.5
1,984,019	+		IAI47_09385	0.73	-0.3
1,984,020	-		IAI47_09385	0.73	-0.0
1,984,020	-		IAI47_09385	0.73	-0.1
1,984,020	-		IAI47_09385	0.73	+1.7
1,984,020	-		IAI47_09385	0.73	+1.0
1,984,079	+		IAI47_09385	0.78	-0.5
1,984,080	-		IAI47_09385	0.78	-1.4
1,984,094	+		IAI47_09385	0.79	-0.4
1,984,113	-		IAI47_09385	0.81	-0.0
1,984,113	-		IAI47_09385	0.81	+0.1
1,984,123	-		IAI47_09385	0.82	+1.4
1,984,123	-		IAI47_09385	0.82	+1.5
1,984,134	+		IAI47_09385	0.83	-0.2
1,984,156	+		IAI47_09385	0.84	+0.5
1,984,156	+		IAI47_09385	0.84	+0.3
1,984,156	+		IAI47_09385	0.84	-1.4
1,984,157	-		IAI47_09385	0.85	+2.5
1,984,157	-		IAI47_09385	0.85	-0.6
1,984,176	+		IAI47_09385	0.86	+3.0
1,984,176	+		IAI47_09385	0.86	+0.5
1,984,176	+		IAI47_09385	0.86	-0.7
1,984,177	-		IAI47_09385	0.86	+0.1
1,984,188	+		IAI47_09385	0.87	+1.4
1,984,225	+				+0.7
1,984,225	+				+1.9
1,984,225	+				-1.4
1,984,225	+				+0.5
1,984,225	+				-0.6
1,984,226	-				+2.5
1,984,338	+				+0.7
1,984,338	+				+1.3
1,984,339	-				+1.0
1,984,345	+				-0.4
1,984,345	+				+0.8
1,984,346	-				-1.3
1,984,346	-				+0.1
1,984,346	-				+3.4
1,984,367	+				+0.0
1,984,385	-				-0.5
1,984,420	+				-1.6
1,984,421	-				+1.0
1,984,427	+				+1.3
1,984,427	+				-0.5
1,984,427	+				+0.3
1,984,428	-				+0.4
1,984,428	-				+1.5
1,984,455	+				+0.1
1,984,455	+				+0.7
1,984,469	+				+0.2
1,984,470	-				+0.4
1,984,470	-				-0.6
1,984,470	-				+2.0
1,984,470	-				+0.7
1,984,506	+				-2.2
1,984,506	+				-2.2
1,984,506	+				-1.7
1,984,507	-				-1.0
1,984,507	-				-1.4
1,984,507	-				-0.3
1,984,507	-				-0.9
1,984,510	+				-1.2
1,984,510	+				-1.5
1,984,510	+				-1.6
1,984,511	-				-2.9
1,984,511	-				-1.2
1,984,511	-				-1.2
1,984,511	-				-2.9
1,984,517	+				-2.0
1,984,517	+				-1.4
1,984,517	+				-0.7
1,984,518	-				-1.6
1,984,518	-				-2.8
1,984,518	-				-3.1
1,984,518	-				-2.0
1,984,518	-				-0.0
1,984,543	+				+0.7
1,984,543	+				-0.9
1,984,545	+				+2.5
1,984,546	-				-1.4
1,984,546	-				-2.6
1,984,546	-				-1.9
1,984,546	-				-2.0
1,984,546	-				-2.2
1,984,637	-		IAI47_09390	0.18	-0.3
1,984,637	-		IAI47_09390	0.18	-2.0
1,984,702	+		IAI47_09390	0.25	-1.9
1,984,702	+		IAI47_09390	0.25	-2.2
1,984,703	-		IAI47_09390	0.25	+0.1
1,984,703	-		IAI47_09390	0.25	+0.2
1,984,703	-		IAI47_09390	0.25	-0.3
1,984,735	+		IAI47_09390	0.28	-2.4
1,984,735	+		IAI47_09390	0.28	-0.8
1,984,736	-		IAI47_09390	0.28	-0.5
1,984,736	-		IAI47_09390	0.28	-0.7
1,984,736	-		IAI47_09390	0.28	-1.2
1,984,736	-		IAI47_09390	0.28	+1.5
1,984,736	-		IAI47_09390	0.28	-2.1
1,984,743	+		IAI47_09390	0.29	-1.7
1,984,743	+		IAI47_09390	0.29	-0.9
1,984,768	+		IAI47_09390	0.31	-0.3
1,984,768	+		IAI47_09390	0.31	-2.7
1,984,768	+		IAI47_09390	0.31	-2.7
1,984,768	+		IAI47_09390	0.31	-1.6
1,984,768	+		IAI47_09390	0.31	-2.2
1,984,769	-		IAI47_09390	0.31	-0.0
1,984,769	-		IAI47_09390	0.31	-2.7
1,984,769	-		IAI47_09390	0.31	-2.4
1,984,769	-		IAI47_09390	0.31	-3.2
1,984,769	-		IAI47_09390	0.31	-1.9
1,984,769	-		IAI47_09390	0.31	+0.2
1,984,797	+		IAI47_09390	0.34	-1.7
1,984,798	-		IAI47_09390	0.34	-1.4
1,984,798	-		IAI47_09390	0.34	-2.3
1,984,798	-		IAI47_09390	0.34	-0.6
1,984,829	-		IAI47_09390	0.37	-0.9
1,984,845	-		IAI47_09390	0.39	-1.5
1,985,012	-		IAI47_09390	0.56	+0.2
1,985,079	+		IAI47_09390	0.62	-1.5
1,985,079	+		IAI47_09390	0.62	-1.9
1,985,080	-		IAI47_09390	0.62	-1.9
1,985,080	-		IAI47_09390	0.62	-2.9
1,985,087	+		IAI47_09390	0.63	-1.0
1,985,088	-		IAI47_09390	0.63	-0.3
1,985,276	-		IAI47_09390	0.82	-0.6
1,985,304	+		IAI47_09390	0.85	+0.2
1,985,305	-		IAI47_09390	0.85	-2.5
1,985,305	-		IAI47_09390	0.85	+0.5
1,985,430	-				-0.5
1,985,443	+				+0.2
1,985,567	+				-0.3
1,985,567	+				+0.3
1,985,568	-				+0.7
1,985,571	-				-1.6
1,985,593	+				+0.4
1,985,602	-				-0.3
1,985,650	+				-1.1
1,985,650	+				-0.8
1,985,650	+				-2.2
1,985,663	+				-0.0
1,985,663	+				+0.1
1,985,737	+		IAI47_09395	0.18	-0.9
1,985,737	+		IAI47_09395	0.18	-0.3
1,985,798	+		IAI47_09395	0.27	-2.3
1,985,969	+		IAI47_09395	0.53	-0.1
1,986,095	+		IAI47_09395	0.71	-1.0
1,986,095	+		IAI47_09395	0.71	+0.1
1,986,209	+		IAI47_09395	0.89	+0.4
1,986,210	-		IAI47_09395	0.89	-0.8
1,986,248	+				+0.4
1,986,248	+				+0.6
1,986,300	+				-1.3
1,986,300	+				-1.9
1,986,300	+				+1.2
1,986,300	+				+2.0
1,986,300	+				+1.3
1,986,301	-				+0.2
1,986,301	-				-1.0
1,986,342	+				-0.3
1,986,342	-				-2.6
1,986,343	-		IAI47_09400	0.10	-1.9
1,986,343	-		IAI47_09400	0.10	-2.2
1,986,395	+		IAI47_09400	0.33	-1.4
1,986,395	+		IAI47_09400	0.33	-0.4
1,986,395	+		IAI47_09400	0.33	+0.2
1,986,396	-		IAI47_09400	0.33	-0.8
1,986,396	-		IAI47_09400	0.33	-1.8
1,986,396	-		IAI47_09400	0.33	-0.6